BAC Information

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BAC

Clone NameB6Ng01-333D04
Chromosome14 (Build37)
Map Location 49,475,313 - 49,612,368
singlet/doubletdoublet
Overlap genenone
Upstream gene4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972
Downstream geneExoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333D04.bB6Ng01-333D04.g
ACCGA119078GA119079
length1,2281,186
definitionB6Ng01-333D04.b B6Ng01-333D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,475,313 - 49,476,565)(49,611,154 - 49,612,368)
sequence
gaattcagatccagatcaggaaccagaacaatgaacagtgccagtcttcc
accacagcaatgtgctcatcaggaaaacagagggctctcccaggccctgc
tctgtggactacgtcgtacatgattctgttattatttacaaatgagaatg
ctttatttaccctgtacgacacccaaatttattcttttatcacctggtat
taaatgcgaacaaaagtagaattctgtcctccggatttgggtttgagacc
gagtttgcatgaaaattaaaagattcaatgaacttctgcattttttttgt
aaagagagataggagctgggaactgggggtcagtcttagaaactggtgca
gcctatcgtctgaaggaagcaatcacattcaaagtaagatgcacgtttaa
tattcaaatattaaaattaatacaaactaatttctaagggtcaataaagt
ataacctgggtaaaatctctggtggattaaaaaggagagactgacaattg
tgaagtgcccttgtccttctaagatactgttgttgggaaaaataggaagg
cctggattgctgtgtgctccagtcactctctgtgatgtattctgtggagt
tatcttgttattcctgccctatagcatatctctcttcaaactccgctcac
agtggaaggttgtatgcagcaaacacttagagttgcagcacactatcaga
ttcagggacagatcccagtttgaggatatgatgggtatttccatatctgt
ttttagttcaaaatctttcaaaggcagagctatcattttatgttttcggg
cttatttctctttttctctgagataagtgtaaacatgccctttccagccg
catgtcagcttcatcgtgacttcctctggctgtgaaaacggattctgcat
acatcatgcttgacaaacggtaacggagctcccaggaagtaagggaagcc
gtttgttctccgggaaggagagatttagagtaggactttgtacacttgag
aggagtgtgagtcattgcaaggctgagataggtcagatctgactcagaca
gatgaggtgctgcaactgagacccaccagaagccagaaaacctacaggaa
accatggtgctctctaccactgcacctatgactctggatagcgaccaact
atttaggtagaagccagtgtacggattaataatatatccgttctctatag
tctagttcccctaaatcacacaagctct
gaattctggactgaaatggggtgagcacagagatctttatgatgctataa
cccttcagtgttctgctggagacactgtggcttgtggaaggtgttcagct
cagcaaggtcgttgatagacccaagaggaaagaaggcagggagaaatgac
tcaagactagatctgagactgtggctctatccactctgtatgaggagtcc
ttatccacaggggaaatacattgagtgtactgaattaccgtgcctgccta
aaccagccactttagtgggcctaatgtcatttgctcatataaatgttccc
taccaattcattcctttttcacagtggccgaggaaatgtacattcattgt
taaaacaaacaaagaacccttctgtgctgcctgacttgcaagtgatgctg
agaccctcccaggatacaggctcagcagagaatatccctgccctttattt
ggtttgtgggaagggagtgggaggctattgtttggatccaggactggcaa
tgtacactggaacattccttctccacctaagccctgagacaaccgcaatc
caggaaagagttaagtcagaaagaggaaaatatctcaccagcatagcttt
taaacaaaagacatgaaaatggaggctctccgtatatggaaaaattttcc
cttttcatccatattgatagccagagggggttattattgagaatatgggt
aaagttactgccagtttttgctgctactcgtgtttaaaaagaaactatgg
aaaccgagagaaggaatattaattaagttcaaatttggaatgtctttgcc
aggcgtggatgaatgaattcaatgaagcaaactgtgttgggttgaaactc
agtgttttgtttgcaattaaaagagtgctgaacttttcatagattaacac
tttttgcagtaatcttattaaaaggttatttcttcatgagatagtctgga
atgcatttttttttctatttaaagaaccagtaggatattttctctccacc
ccctcccccacaattgtaagtagctgcattactagtatgccccccaatgt
ttacaaatgtataaattacttgctaaataacacgaatgcacagactagcc
atcctcacacccagctggcatcttcctacttaactgagaacttgttacag
ctgttatcattaagatgaattgcaaactacttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_49475313_49476565
seq2: B6Ng01-333D04.b_50_1277

seq1  GAATTCAGATCCAGATCAGGAACCAGAACAATGAACAGTGCCAGTCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCAGATCAGGAACCAGAACAATGAACAGTGCCAGTCTTCC  50

seq1  ACCACAGCAATGTGCTCATCAGGAAAACAGAGGGCTCTCCCAGGCCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCAATGTGCTCATCAGGAAAACAGAGGGCTCTCCCAGGCCCTGC  100

seq1  TCTGTGGACTACGTCGTACATGATTCTGTTATTATTTACAAATGAGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGACTACGTCGTACATGATTCTGTTATTATTTACAAATGAGAATG  150

seq1  CTTTATTTACCCTGTACGACACCCAAATTTATTCTTTTATCACCTGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTACCCTGTACGACACCCAAATTTATTCTTTTATCACCTGGTAT  200

seq1  TAAATGCGAACAAAAGTAGAATTCTGTCCTCCGGATTTGGGTTTGAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCGAACAAAAGTAGAATTCTGTCCTCCGGATTTGGGTTTGAGACC  250

seq1  GAGTTTGCATGAAAATTAAAAGATTCAATGAACTTCTGCATTTTTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGCATGAAAATTAAAAGATTCAATGAACTTCTGCATTTTTTTTGT  300

seq1  AAAGAGAGATAGGAGCTGGGAACTGGGGGTCAGTCTTAGAAACTGGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGATAGGAGCTGGGAACTGGGGGTCAGTCTTAGAAACTGGTGCA  350

seq1  GCCTATCGTCTGAAGGAAGCAATCACATTCAAAGTAAGATGCACGTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCGTCTGAAGGAAGCAATCACATTCAAAGTAAGATGCACGTTTAA  400

seq1  TATTCAAATATTAAAATTAATACAAACTAATTTCTAAGGGTCAATAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAATATTAAAATTAATACAAACTAATTTCTAAGGGTCAATAAAGT  450

seq1  ATAACCTGGGTAAAATCTCTGGTGGATTAAAAAGGAGAGACTGACAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTGGGTAAAATCTCTGGTGGATTAAAAAGGAGAGACTGACAATTG  500

seq1  TGAAGTGCCCTTGTCCTTCTAAGATACTGTTGTTGGGAAAAATAGGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGCCCTTGTCCTTCTAAGATACTGTTGTTGGGAAAAATAGGAAGG  550

seq1  CCTGGATTGCTGTGTGCTCCAGTCACTCTCTGTGATGTATTCTGTGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATTGCTGTGTGCTCCAGTCACTCTCTGTGATGTATTCTGTGGAGT  600

seq1  TATCTTGTTATTCCTGCCCTATAGCATATCTCTCTTCAAACTCCGCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGTTATTCCTGCCCTATAGCATATCTCTCTTCAAACTCCGCTCAC  650

seq1  AGTGGAAGGTTGTATGCAGCAAACACTTAGAGTTGCAGCACACTATCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGGTTGTATGCAGCAAACACTTAGAGTTGCAGCACACTATCAGA  700

seq1  TTCAGGGACAGATCCCAGTTTGAGGATATGATGGGTATTTCCATATCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGACAGATCCCAGTTTGAGGATATGATGGGTATTTCCATATCTGT  750

seq1  TTTTAGTTCAAAATCTTTCAAAGGCAGAGCTATCATTTTATGTTTTCGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTCAAAATCTTTCAAAGGCAGAGCTATCATTTTATGTTTTCGGG  800

seq1  CTTATTTCTCTTTTTCTCTGAGATAAGTGTAAACATGCCCTTTCCAGCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCTCTTTTTCTCTGAGATAAGTGTAAACATGCCCTTTCCAGCCG  850

seq1  CATGTCAGCTTCATCGTGACTTCCTCTGGCTGTGAAAACGGATTCTGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGCTTCATCGTGACTTCCTCTGGCTGTGAAAACGGATTCTGCAT  900

seq1  ACATCATGCTTGACAAACGGTAACGGAGCTCCCAGGAAGTAAGGGGAAGC  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACATCATGCTTGACAAACGGTAACGGAGCTCCCAGGAAGTAA-GGGAAGC  949

seq1  CGTTTGTTCTCCGGGAAGGAGAGATTTAGAGTAGGACTTTGTACACTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGTTCTCCGGGAAGGAGAGATTTAGAGTAGGACTTTGTACACTTGA  999

seq1  GGAGGAGTGTGAGGTTCATTGCAAGGCTGAGATAGGTCCAGATCCTGACT  1050
       ||||||||||||  |||||||||||||||||||||| ||||| ||||||
seq2  -GAGGAGTGTGAG--TCATTGCAAGGCTGAGATAGGT-CAGAT-CTGACT  1044

seq1  CCAGACAAGATGAGGTGCCTGCACCTGAGACCCACCAAGAAGCCAGAAAA  1100
       ||||| |||||||||| ||||| |||||||||||| ||||||||| |||
seq2  -CAGAC-AGATGAGGTG-CTGCAACTGAGACCCACC-AGAAGCCAG-AAA  1089

seq1  ACCTACAGGAAACCAT-GTGCTCTCTACCCAACTGCACCTATGACTCCTG  1149
      |||||||||||||||| ||||||||||||  ||||||||||||||| |||
seq2  ACCTACAGGAAACCATGGTGCTCTCTACC--ACTGCACCTATGACT-CTG  1136

seq1  GTATAAGCGAACACAAACCTTATTAGGTTAGAGCCCAAGTTGTCACGGAT  1199
      | || ||||   || |||  ||||  | ||||  |||   ||| ||||||
seq2  G-AT-AGCG---ACCAAC--TATTTAGGTAGAAGCCA--GTGT-ACGGAT  1176

seq1  TAAAATAAATAATACCCGTTCTC-ATAGTCAAAGTTCACT-AATCACACA  1247
      |  |||||   ||| |||||||| |||||| |  | | || |||||||||
seq2  T--AATAA--TATATCCGTTCTCTATAGTCTAGTTCCCCTAAATCACACA  1222

seq1  AGCTCT  1253
      ||||||
seq2  AGCTCT  1228

seq1: chr14_49611154_49612368
seq2: B6Ng01-333D04.g_71_1256 (reverse)

seq1  AGAGAAGTTAGTTTTTGCAAATCAAATCTCTTAATGATCTACCAGACTGG  50
      ||||||| |||  ||||||| |||    |||||||||  || ||| || |
seq2  AGAGAAG-TAG--TTTGCAATTCA----TCTTAATGA--TAACAG-CT-G  39

seq1  TAACAAGTTTCTTCAGTTAGAGGTGGGGGAAGATGCCAAGGCTGGGGTGT  100
      |||||||||   |||||||     |  |||||||||||  |||||   ||
seq2  TAACAAGTT--CTCAGTTA----AGTAGGAAGATGCCA--GCTGG---GT  78

seq1  TTGAGGATTTGCTAGTCTGTGCCATTTGGTGTTATTTTTAGCAAGTAAAT  150
       |||||| | ||||||||||||   || ||||||  |||||||||| |||
seq2  GTGAGGA-TGGCTAGTCTGTGC--ATTCGTGTTA--TTTAGCAAGT-AAT  122

seq1  GTATTAACATTTGTAAACATTGGGGGGCATACTTAGTAATGCAGCTACTT  200
       |||  |||||||||||||||||||||||||| |||||||||||||||||
seq2  TTAT--ACATTTGTAAACATTGGGGGGCATAC-TAGTAATGCAGCTACTT  169

seq1  ACAATTGTGGGGGAGGGGGTGGAGAGAAAATAT-CTACTGGTTCTTTAAA  249
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACAATTGTGGGGGAGGGGGTGGAGAGAAAATATCCTACTGGTTCTTTAAA  219

seq1  TAG-AAAAAAAATGCATTCCAGAACTAATCTCATGAAGAAATAACCTTTT  298
      ||| |||||||||||||||||| ||| |||||||||||||||||||||||
seq2  TAGAAAAAAAAATGCATTCCAG-ACT-ATCTCATGAAGAAATAACCTTTT  267

seq1  AATAAGATTACTGCAAAAAGTGTTAATCTATGAAAAGTTCAGCACTCTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATTACTGCAAAAAGTGTTAATCTATGAAAAGTTCAGCACTCTTT  317

seq1  TAATTGCAAACAAAACACTGAGTTTCAACCCA--ACAGGTTGCTTCATTG  396
      ||||||||||||||||||||||||||||||||  |||| |||||||||||
seq2  TAATTGCAAACAAAACACTGAGTTTCAACCCAACACAGTTTGCTTCATTG  367

seq1  AATTCATTCATCCACGCCTGGCAAAGACATTCCAAATTTGAACTTAATTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTCATCCACGCCTGGCAAAGACATTCCAAATTTGAACTTAATTA  417

seq1  ATATTCCTTCTCTCGGTTTCCATAGTTTCTTTTTAAACACGAGTAGCAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTTCTCTCGGTTTCCATAGTTTCTTTTTAAACACGAGTAGCAGC  467

seq1  AAAAACTGGCAGTAACTTTACCCATATTCTCAATAATAACCCCCTCTGGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTGGCAGTAACTTTACCCATATTCTCAATAATAACCCCCTCTGGC  517

seq1  TATCAATATGGATGAAAAGGGAAAATTTTTCCATATACGGAGAGCCTCCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATATGGATGAAAAGGGAAAATTTTTCCATATACGGAGAGCCTCCA  567

seq1  TTTTCATGTCTTTTGTTTAAAAGCTATGCTGGTGAGATATTTTCCTCTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGTCTTTTGTTTAAAAGCTATGCTGGTGAGATATTTTCCTCTTT  617

seq1  CTGACTTAACTCTTTCCTGGATTGCGGTTGTCTCAGGGCTTAGGTGGAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTAACTCTTTCCTGGATTGCGGTTGTCTCAGGGCTTAGGTGGAGA  667

seq1  AGGAATGTTCCAGTGTACATTGCCAGTCCTGGATCCAAACAATAGCCTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTTCCAGTGTACATTGCCAGTCCTGGATCCAAACAATAGCCTCC  717

seq1  CACTCCCTTCCCACAAACCAAATAAAGGGCAGGGATATTCTCTGCTGAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTTCCCACAAACCAAATAAAGGGCAGGGATATTCTCTGCTGAGC  767

seq1  CTGTATCCTGGGAGGGTCTCAGCATCACTTGCAAGTCAGGCAGCACAGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCCTGGGAGGGTCTCAGCATCACTTGCAAGTCAGGCAGCACAGAA  817

seq1  GGGTTCTTTGTTTGTTTTAACAATGAATGTACATTTCCTCGGCCACTGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTTTGTTTGTTTTAACAATGAATGTACATTTCCTCGGCCACTGTG  867

seq1  AAAAAGGAATGAATTGGTAGGGAACATTTATATGAGCAAATGACATTAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAATGAATTGGTAGGGAACATTTATATGAGCAAATGACATTAGG  917

seq1  CCCACTAAAGTGGCTGGTTTAGGCAGGCACGGTAATTCAGTACACTCAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTAAAGTGGCTGGTTTAGGCAGGCACGGTAATTCAGTACACTCAAT  967

seq1  GTATTTCCCCTGTGGATAAGGACTCCTCATACAGAGTGGATAGAGCCACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCCCCTGTGGATAAGGACTCCTCATACAGAGTGGATAGAGCCACA  1017

seq1  GTCTCAGATCTAGTCTTGAGTCATTTCTCCCTGCCTTCTTTCCTCTTGGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGATCTAGTCTTGAGTCATTTCTCCCTGCCTTCTTTCCTCTTGGG  1067

seq1  TCTATCAACGACCTTGCTGAGCTGAACACCTTCCACAAGCCACAGTGTCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAACGACCTTGCTGAGCTGAACACCTTCCACAAGCCACAGTGTCT  1117

seq1  CCAGCAGAACACTGAAGGGTTATAGCATCATAAAGATCTCTGTGCTCACC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGAACACTGAAGGGTTATAGCATCATAAAGATCTCTGTGCTCACC  1167

seq1  CCATTTCAGTCCAGAATTC  1215
      |||||||||||||||||||
seq2  CCATTTCAGTCCAGAATTC  1186