BAC Information

Click to search

BAC

Clone NameB6Ng01-333M11
Chromosome14 (Build37)
Map Location 85,937,612 - 85,938,769
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629794, LOC668603
Downstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333M11.bB6Ng01-333M11.g
ACCGA119460GA119461
length5911,152
definitionB6Ng01-333M11.b B6Ng01-333M11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctgatctttccaaaacttatagaatgaagggatgctgaactttgtcaaat
gatttttcagcatctaatgaaatgatcatgtggtttgggggttttcttct
tttttttttttttttttttttttttgagcttgttcatgtagtgagttagg
atgatggatttccatatattgaaccattcctgcatccctgggatgaagcc
tacttaattgtggtgaatgatacttttaatgtgttctttgatttggttgg
caagaattttattgggtatttttgcatcaatgtccataagggaggttggt
ctgaagttctctgtctttatttggtctttgtgtggtttaggtataagcat
aattgtggtttcacagaatgaattgggtagtgttccttctgtttctgttt
tgtggaatagtttggagagtcttggtattaagtcatctttaaaggtctaa
aaattctccactaaacccatctggtcctgggctttttgggggttgttggg
agactattaataatggcttctattcctttaggggtattgggacggtttat
aggatttatctgatcctgttttaactttggcacttggtata

gaattctataaagtcattattaggaattaagaaaccatcaattcatttac
acagcattcctacatgaccatatcttcactttgattctggagggaatctg
ctcagtatggtgaattaatgccaggaatcatcagactatggaatagtggt
agaaaaggcatatgagcagcaagaagcaatcctaggataaagtctctaag
gaccttgcatctcagagctcacccatcataggccatgcaaaatggtggac
atatacttgatggcttttgacacataacatttgtgacactatcacacaag
tgtgtcttgcaggcagataattttgatgaggtatgatatattactgagaa
tgagcatggtagaagaaatagctcctcagaaaacttcagctgtagtcaga
ttaaaattacatgtagaacaaaacaaaaattccagtcatgaaacttatgc
ctatgcttctgtttatagaaatactgaattccccccccaccaccaccacc
aaaaaatgtttagatttcacacttagcttctttaggaagaaagacatgat
gaaggccatggttctcctgttatctctcattttttagtgctttgtgaatg
ttattatagtgtaccaacactatttctgatagccatttgaggccaaatta
tttggtcaacatcaactttaaataaaacatggggatataaaacaaataat
ggaaacatgttatgttatatagaataaaataagtattaagaaaaattatt
tgaagaacgatgaagaagttatttttgtgtttgcttagatttttgtgtga
cataataataatgacaatgaaaagtcacttgcctgtgtgaaagatacaca
tggtgggaatcatataagcaactactatcaaagcttctatatgtgtttgg
taatagcaacgtttaaagaatcaacttaaaatagtctagaattctttaag
cttttagctaaatcaaaaagtggtatagaatgtgaaatgttcttagaaaa
tagtaacctccatgagtcaaaggtggcaaaatttttgagtgagattttaa
aatgtactaaacttttctagaaaaatacagtagctgtaaagatcagcaga
gtcacctcttcagatctgagctgacatctagagacatcatgctaggacct
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85937612_85938769
seq2: B6Ng01-333M11.g_64_1215

seq1  GAATTCTATAAAGTCATTATTAGGAATTAAGAAACCATCAATTCATTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAAGTCATTATTAGGAATTAAGAAACCATCAATTCATTTAC  50

seq1  ACAGCATTCCTACATGACCATATCTTCACTTTGATTCTGGAGGGAATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATTCCTACATGACCATATCTTCACTTTGATTCTGGAGGGAATCTG  100

seq1  CTCAGTATGGTGAATTAATGCCAGGAATCATCAGACTATGGAATAGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATGGTGAATTAATGCCAGGAATCATCAGACTATGGAATAGTGGT  150

seq1  AGAAAAGGCATATGAGCAGCAAGAAGCAATCCTAGGATAAAGTCTCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGCATATGAGCAGCAAGAAGCAATCCTAGGATAAAGTCTCTAAG  200

seq1  GACCTTGCATCTCAGAGCTCACCCATCATAGGCCATGCAAAATGGTGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGCATCTCAGAGCTCACCCATCATAGGCCATGCAAAATGGTGGAC  250

seq1  ATATACTTGATGGCTTTTGACACATAACATTTGTGACACTATCACACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTGATGGCTTTTGACACATAACATTTGTGACACTATCACACAAG  300

seq1  TGTGTCTTGCAGGCAGATAATTTTGATGAGGTATGATATATTACTGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTGCAGGCAGATAATTTTGATGAGGTATGATATATTACTGAGAA  350

seq1  TGAGCATGGTAGAAGAAATAGCTCCTCAGAAAACTTCAGCTGTAGTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGGTAGAAGAAATAGCTCCTCAGAAAACTTCAGCTGTAGTCAGA  400

seq1  TTAAAATTACATGTAGAACAAAACAAAAATTCCAGTCATGAAACTTATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTACATGTAGAACAAAACAAAAATTCCAGTCATGAAACTTATGC  450

seq1  CTATGCTTCTGTTTATAGAAATACTGAATTCCCCCCCCACCACCACCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTTCTGTTTATAGAAATACTGAATTCCCCCCCCACCACCACCACC  500

seq1  AAAAAATGTTTAGATTTCACACTTAGCTTCTTTAGGAAGAAAGACATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTTTAGATTTCACACTTAGCTTCTTTAGGAAGAAAGACATGAT  550

seq1  GAAGGCCATGGTTCTCCTGTTATCTCTCATTTTTTAGTGCTTTGTGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCATGGTTCTCCTGTTATCTCTCATTTTTTAGTGCTTTGTGAATG  600

seq1  TTATTATAGTGTACCAACACTATTTCTGATAGCCATTTGAGGCCAAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATAGTGTACCAACACTATTTCTGATAGCCATTTGAGGCCAAATTA  650

seq1  TTTGGTCAACATCAACTTTAAATAAAACATGGGGATATAAAACAAATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCAACATCAACTTTAAATAAAACATGGGGATATAAAACAAATAAT  700

seq1  GGAAACATGTTATGTTATATAGAATAAAATAAGTATTAAGAAAAATTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATGTTATGTTATATAGAATAAAATAAGTATTAAGAAAAATTATT  750

seq1  TGAAGAACGATGAAGAAGGTTATTTTTGTGTTTGCTTAGATTTTTGTGTG  800
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGAAGAACGATGAAGAA-GTTATTTTTGTGTTTGCTTAGATTTTTGTGTG  799

seq1  ACATAATAATAATGACAATGAAAAGTCACTTGCCTGTGTGAAAGATACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATAATAATGACAATGAAAAGTCACTTGCCTGTGTGAAAGATACAC  849

seq1  ATGGTGGGAATCATATAAGCAACTACTATCAAAGCTTCTATATGTGTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGGAATCATATAAGCAACTACTATCAAAGCTTCTATATGTGTTTG  899

seq1  GTAATAGCAACGTTTAAAGAATCAACTTAAAATAGTCTAGAATTCTTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGCAACGTTTAAAGAATCAACTTAAAATAGTCTAGAATTCTTTAA  949

seq1  GCTTTTAGCTAAATCAAAAAGTGGTATAAGAATGTGAAATGTTCTTAG-A  999
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  GCTTTTAGCTAAATCAAAAAGTGGTAT-AGAATGTGAAATGTTCTTAGAA  998

seq1  AATAGTAA-CTCCATGAGTCAAAGGTGGCAAAAATTTTTGAGTGAGATTT  1048
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  AATAGTAACCTCCATGAGTCAAAGGTGGC-AAAATTTTTGAGTGAGATTT  1047

seq1  TAAAATGTACTTAAACTTTTTCTAG-AAAATACAGTAGCTGTAAAGGATC  1097
      |||||||||| ||||| |||||||| ||||||||||||||||||| ||||
seq2  TAAAATGTAC-TAAAC-TTTTCTAGAAAAATACAGTAGCTGTAAA-GATC  1094

seq1  CAAGCAGAGTCA-CTCTTCAGATCTGAGCCTGACCATCTAGAGACATCAT  1146
        |||||||||| ||||||||||||||| |||| ||||||||||||||||
seq2  --AGCAGAGTCACCTCTTCAGATCTGAG-CTGA-CATCTAGAGACATCAT  1140

seq1  GCTAGGAGCTAG  1158
      ||||||| ||||
seq2  GCTAGGACCTAG  1152


| Home | SequenceCutter | Blast | Download |