BAC Information

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BAC

Clone NameB6Ng01-334D06
Chromosome14 (Build37)
Map Location 84,847,540 - 84,966,119
singlet/doubletdoublet
Overlap genePcdh17, 9630013A20Rik
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
Downstream geneLOC629794, LOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334D06.bB6Ng01-334D06.g
ACCGA119766GA119767
length1,1331,152
definitionB6Ng01-334D06.b B6Ng01-334D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,847,540 - 84,848,701)(84,964,949 - 84,966,119)
sequence
gaattcaaagtactggctaaggactcaggggcgccagcgcacttggagag
caacgccacggtgagggtgacggttttagacgtgaacgacaacgctccag
tgattgtgcttcccacgctacagaatgacacagctgagctgcaggtcccg
cgcaatgctggcctggggtacctggtaagcaccgtgcgcgccctggacag
cgactttggagagagcgggcgcctcacctatgagatcgtggatggcaacg
atgaccacctgtttgagatcgatccgtccagcggcgagatccgcacgctg
caccccttctgggaggatgtgaccccagtggtggagcttgtggtgaaggt
gaccgatcatggcaagcccaccctttccgctgtggccaaacttatcatcc
gctcagtgagcggctccctgcctgaaggggtaccgcgagtgaatggcgag
cagcaccactgggacatgtccctgcctctcatagtgacactgagcacgat
ttctatcatcctcctagcggccatgatcaccatcgctgtcaagtgtaaac
gggaaaacaaggagattcgcacttacaactgccgcatcgccgagtacagc
caccctcagctaggcggggggaagggcaagaagaagaaaatcaacaaaaa
cgatatcatgctggtgcagagcgaggtggaggagaggaacgccatgaacg
tcatgaacgtggtgagcagtccctccctggccacctcccctatgtacttc
gactaccaaacccgcctgcccctcagctcgccccggtcagaggtgatgta
tcttaagccagcctccaacaacctgactgtcccgcaggggcacgcaggct
gccacaccagcttcaccggacaagggactaattcgagcgagacccctgcc
actcggatgtccataattcagtaggagacttttagagtaaaggggacttc
acataaagcttttgctgtgctgtcctgagacctttggataggaaagccag
atggccagcatcatgtgtgtgggtagcatagtactcaatgtcacatcttg
acctgtgtgataccatgctatcgatcctccgggtaaaatagctaaacatg
ccatactctgctgcattttttccaatttatttt
gaattcataagtgaaatgctgttgtcatgtggcttcacattgagcctagc
tcagatatttgcatagaaaccacagtattgcccaagttctattaaaattg
catgctaaattaattcaagtgttttctcttttcagagcctaggctatatt
aaaaatataatgcttatatatatatatatatatatatatatatatatatt
acatatacaatcataaatacagttgattattgtgtccctgaaatgtattc
actactacagagtgagattaaaaagttccaatttcagaaatttacaatgt
aagaaaataaaaatttaaatatttctttcacattagatgcatattatcca
ttgttttgtaagatatagaatgatttgtgaataatcattctatataaaga
aatgtagactacagtgagctttcaaaaatagagaatttcctcaggaagaa
aacaaactgataattccaggcatgcagaatactttttagatgaaatacat
aaaaaaattaggtgcacagttattccatagcatcccatttactaaagtag
aactgtgtgaaacattaaaatatattaattatcctgtattactgatcact
tctttctcttactaagagacagtctggaaagccagagccggaggtgtatt
tataattttttgagctgttggtttcacagaagtatttaatctataagaga
acatgggaaaaatcagacagaacatagtccaccaacctttatttgcttac
ctcttccttttctctgtgtagtggtttgaataggaactactccctcactc
cactcccacttcccaatgtagaatcatgtgttttaatacttgaccataaa
ggggtggccttgttggaggaaggatgtcactgtggagcaagctttgaggt
tatatatatgctcaagctatgaccagtggggcatatggtctccttctgtt
gcctgtggatagatgtaggattctcagctcccctgcacatgtcttctgaa
cactctctgcttcccacggtgatgatagagactaaatctctgaaacagta
cacagcccaatcatgtttctttgtaataaaccatttactgtcatgctatc
ccttacagaatgaacctagaacccttctgtatgtttactgcatcacacct
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84847540_84848701
seq2: B6Ng01-334D06.b_49_1181

seq1  GAATTCAAAGTACTGGCTAAGGACTCAGGGGCGCCAGCGCACTTGGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTACTGGCTAAGGACTCAGGGGCGCCAGCGCACTTGGAGAG  50

seq1  CAACGCCACGGTGAGGGTGACGGTTTTAGACGTGAACGACAACGCTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCCACGGTGAGGGTGACGGTTTTAGACGTGAACGACAACGCTCCAG  100

seq1  TGATTGTGCTTCCCACGCTACAGAATGACACAGCTGAGCTGCAGGTCCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTGCTTCCCACGCTACAGAATGACACAGCTGAGCTGCAGGTCCCG  150

seq1  CGCAATGCTGGCCTGGGGTACCTGGTAAGCACCGTGCGCGCCCTGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAATGCTGGCCTGGGGTACCTGGTAAGCACCGTGCGCGCCCTGGACAG  200

seq1  CGACTTTGGAGAGAGCGGGCGCCTCACCTATGAGATCGTGGATGGCAACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTTGGAGAGAGCGGGCGCCTCACCTATGAGATCGTGGATGGCAACG  250

seq1  ATGACCACCTGTTTGAGATCGATCCGTCCAGCGGCGAGATCCGCACGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCACCTGTTTGAGATCGATCCGTCCAGCGGCGAGATCCGCACGCTG  300

seq1  CACCCCTTCTGGGAGGATGTGACCCCAGTGGTGGAGCTTGTGGTGAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTTCTGGGAGGATGTGACCCCAGTGGTGGAGCTTGTGGTGAAGGT  350

seq1  GACCGATCATGGCAAGCCCACCCTTTCCGCTGTGGCCAAACTTATCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGATCATGGCAAGCCCACCCTTTCCGCTGTGGCCAAACTTATCATCC  400

seq1  GCTCAGTGAGCGGCTCCCTGCCTGAAGGGGTACCGCGAGTGAATGGCGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGAGCGGCTCCCTGCCTGAAGGGGTACCGCGAGTGAATGGCGAG  450

seq1  CAGCACCACTGGGACATGTCCCTGCCTCTCATAGTGACACTGAGCACGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCACTGGGACATGTCCCTGCCTCTCATAGTGACACTGAGCACGAT  500

seq1  TTCTATCATCCTCCTAGCGGCCATGATCACCATCGCTGTCAAGTGTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCATCCTCCTAGCGGCCATGATCACCATCGCTGTCAAGTGTAAAC  550

seq1  GGGAAAACAAGGAGATTCGCACTTACAACTGCCGCATCGCCGAGTACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACAAGGAGATTCGCACTTACAACTGCCGCATCGCCGAGTACAGC  600

seq1  CACCCTCAGCTAGGCGGGGGGAAGGGCAAGAAGAAGAAAATCAACAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCAGCTAGGCGGGGGGAAGGGCAAGAAGAAGAAAATCAACAAAAA  650

seq1  CGATATCATGCTGGTGCAGAGCGAGGTGGAGGAGAGGAACGCCATGAACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATATCATGCTGGTGCAGAGCGAGGTGGAGGAGAGGAACGCCATGAACG  700

seq1  TCATGAACGTGGTGAGCAGTCCCTCCCTGGCCACCTCCCCTATGTACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAACGTGGTGAGCAGTCCCTCCCTGGCCACCTCCCCTATGTACTTC  750

seq1  GACTACCAAACCCGCCTGCCCCTCAGCTCGCCCCGGTCAGAGGTGATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACCAAACCCGCCTGCCCCTCAGCTCGCCCCGGTCAGAGGTGATGTA  800

seq1  TCTTAAGCCAGCCTCCAACAACCTGACTGTCCCGCAGGGGCACGCAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGCCAGCCTCCAACAACCTGACTGTCCCGCAGGGGCACGCAGGCT  850

seq1  GCCACACCAGCTTCACCGGACAAGGGACTAATTCGAGCGAGACCCCTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCAGCTTCACCGGACAAGGGACTAATTCGAGCGAGACCCCTGCC  900

seq1  ACTCGGATGTCCATAATTCAGGTAGGAGACTTTTAGAGTAAAGGGGACTT  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTCGGATGTCCATAATTCA-GTAGGAGACTTTTAGAGTAAAGGGGACTT  949

seq1  CACATAAAAGCTTTTGCTGTGCTGTCCTGAGACCTTTGGATAAGGGAAAG  1000
      ||||| ||||||||||||||||||||||||||||||||||||  ||||||
seq2  CACAT-AAAGCTTTTGCTGTGCTGTCCTGAGACCTTTGGATA--GGAAAG  996

seq1  CCAGATGGCCAGCAATCATGTGTGTGGGGTAGGCAATAGTTAACTCAAAA  1050
      ||||||||||||| ||||||||||| ||||||   |||||  ||||  ||
seq2  CCAGATGGCCAGC-ATCATGTGTGT-GGGTAG--CATAGT--ACTC--AA  1038

seq1  TGGTTCACATCTTTGACCCTGTGTGAATACCATTGGCTATTCAGAATCCC  1100
      ||  ||||||| |||| |||||||| |||||||  |||||     |||| 
seq2  TG--TCACATC-TTGA-CCTGTGTG-ATACCAT--GCTAT---CGATCC-  1077

seq1  TCCCGGGTAAAAATAGCTAAAACACATGCCATACCTCTGCTGCATTTTTT  1150
        |||||| |||||||||||   |||||||||| ||||||||||||||||
seq2  -TCCGGGT-AAAATAGCTAA---ACATGCCATA-CTCTGCTGCATTTTTT  1121

seq1  CAAATTTATTTT  1162
      | ||||||||||
seq2  CCAATTTATTTT  1133

seq1: chr14_84964949_84966119
seq2: B6Ng01-334D06.g_68_1219 (reverse)

seq1  ATAGGTGTGATGCATGTATATCATACAG-AGTGTCTTAGGGTTTCATTCT  49
      |||||||||||||| ||| | ||||||| || ||  ||||  ||||||| 
seq2  ATAGGTGTGATGCA-GTA-AACATACAGAAGGGTTCTAGG--TTCATTC-  45

seq1  TGTAAAGGGATAGCATGACAGTAAATGGTTTATTACAAAGGAAACCATTG  99
      ||| ||||||||||||||||||||||||||||||||||| |||||   ||
seq2  TGT-AAGGGATAGCATGACAGTAAATGGTTTATTACAAA-GAAAC--ATG  91

seq1  AATTTGGGGCTTGTGTACTGTTTCAGAGATTTAGTCCTCTATCATCACCG  149
      |  |||||   |||||||||||||||||||||||| ||||||||||||||
seq2  A--TTGGG--CTGTGTACTGTTTCAGAGATTTAGT-CTCTATCATCACCG  136

seq1  TGGGAAGCAGGAGAGTGTTCAGGAAGACATGGTGCAGGGGGAGCTGAGAA  199
      ||||||||| ||||||||||| |||||||| ||||| |||||||||||||
seq2  TGGGAAGCA-GAGAGTGTTCA-GAAGACAT-GTGCA-GGGGAGCTGAGAA  182

seq1  TCCTACATCTTAATCCACAGGCAACAGAAGGAGACCATATGCCCCACTGG  249
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  TCCTACATCT--ATCCACAGGCAACAGAAGGAGACCATATGCCCCACTGG  230

seq1  TCATAGCTTGAGCATATATATAACCTCAAAGCTTGCTCCACAGTGACATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCTTGAGCATATATATAACCTCAAAGCTTGCTCCACAGTGACATC  280

seq1  CTTCCTCCAACAAGGCCACCCC-TTATGGTCAAGTATTAAAACACATGAT  348
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTCCTCCAACAAGGCCACCCCTTTATGGTCAAGTATTAAAACACATGAT  330

seq1  TCTACATTGGGAAGTGGGAGTGGAGTGAGGGAGTAGTTCCTATTCAAACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTGGGAAGTGGGAGTGGAGTGAGGGAGTAGTTCCTATTCAAACC  380

seq1  ACTACACAGAGAAAAGGAAGAGGTAAGCAAATAAAGGTTGGTGGACTATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACAGAGAAAAGGAAGAGGTAAGCAAATAAAGGTTGGTGGACTATG  430

seq1  TTCTGTCTGATTTTTCCCATGTTTCTCTTATAGATTAAATACTTCTGTGA  498
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCTGTCTGATTTTTCCCATG-TTCTCTTATAGATTAAATACTTCTGTGA  479

seq1  AACCAACAGCTCAAAAAATTATAAATACACCTCCGGCTCTGGCTTTCCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACAGCTCAAAAAATTATAAATACACCTCCGGCTCTGGCTTTCCAG  529

seq1  ACTGTCTCTTAGTAAGAGAAAGAAGTGATCAGTAATACAGGATAATTAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCTTAGTAAGAGAAAGAAGTGATCAGTAATACAGGATAATTAAT  579

seq1  ATATTTTAATGTTTCACACAGTTCTACTTTAGTAAATGGGATGCTATGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAATGTTTCACACAGTTCTACTTTAGTAAATGGGATGCTATGGA  629

seq1  ATAACTGTGCACCTAATTTTTTTATGTATTTCATCTAAAAAGTATTCTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGTGCACCTAATTTTTTTATGTATTTCATCTAAAAAGTATTCTGC  679

seq1  ATGCCTGGAATTATCAGTTTGTTTTCTTCCTGAGGAAATTCTCTATTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGAATTATCAGTTTGTTTTCTTCCTGAGGAAATTCTCTATTTTT  729

seq1  GAAAGCTCACTGTAGTCTACATTTCTTTATATAGAATGATTATTCACAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTCACTGTAGTCTACATTTCTTTATATAGAATGATTATTCACAAA  779

seq1  TCATTCTATATCTTACAAAACAATGGATAATATGCATCTAATGTGAAAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTATATCTTACAAAACAATGGATAATATGCATCTAATGTGAAAGA  829

seq1  AATATTTAAATTTTTATTTTCTTACATTGTAAATTTCTGAAATTGGAACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAAATTTTTATTTTCTTACATTGTAAATTTCTGAAATTGGAACT  879

seq1  TTTTAATCTCACTCTGTAGTAGTGAATACATTTCAGGGACACAATAATCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCTCACTCTGTAGTAGTGAATACATTTCAGGGACACAATAATCA  929

seq1  ACTGTATTTATGATTGTATATGTAATATATATATATATATATATATATAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTTATGATTGTATATGTAATATATATATATATATATATATATAT  979

seq1  ATATATATAAGCATTATATTTTTAATATAGCCTAGGCTCTGAAAAGAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAAGCATTATATTTTTAATATAGCCTAGGCTCTGAAAAGAGAA  1029

seq1  AACACTTGAATTAATTTAGCATGCAATTTTAATAGAACTTGGGCAATACT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGAATTAATTTAGCATGCAATTTTAATAGAACTTGGGCAATACT  1079

seq1  GTGGTTTCTATGCAAATATCTGAGCTAGGCTCAATGTGAAGCCACATGAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTCTATGCAAATATCTGAGCTAGGCTCAATGTGAAGCCACATGAC  1129

seq1  AACAGCATTTCACTTATGAATTC  1171
      |||||||||||||||||||||||
seq2  AACAGCATTTCACTTATGAATTC  1152