BAC Information

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BAC

Clone NameB6Ng01-334J23
Chromosome14 (Build37)
Map Location 43,008,308 - 43,162,656
singlet/doubletdoublet
Overlap geneEG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298
Upstream geneLOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771
Downstream geneLOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334J23.bB6Ng01-334J23.g
ACCGA120083GA120084
length3911,114
definitionB6Ng01-334J23.b B6Ng01-334J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,162,260 - 43,162,656)(43,008,308 - 43,009,429)
sequence
cccaggacatcagtgaggctttgtacaagtacaaggagttgattaaagaa
aatcaattctactggtgagtgactaacagggtcgtgatccaagcactagg
cacaggatatgtctgcccatccttgtctttgaaccaaagtaggggctcag
tttatatactgtttgcctctaaaccagaagcctggctccttcaaagcaag
gctctaggatttttaccacttaaagtcattttggccaagtgtgaagagtc
tgtgagcaactcaaatcattgtcctttccaacaaagtatatttgaatgta
gatacatagataaggtttccatgggacacctagaaagactgtatgttggt
tgggtctcctctcttctcctaaagaaggtctgccttctacc
gaattctaggagaagctgcagtgcagccagatttggaggagtcccaaaac
cctcctgggacaactagtcatggagtttgttcagcagccatctgtctgca
ggagtcagggtgttcttcagagtcacatctcttctctaaagctttgaaga
accacctgtctgagggccagaagctcttgtgggtatctgctgatgcagag
ttagaaacagctctactaagtactcagcctgatgcacagagtcctaaggg
gagacacagcaaatacagaggtctgaaggaaaggacaaagtacccaaaat
ctgagtatccaaggctgtatcctcagattagaaagagaacagaaaaaatg
gagagggaacccagtaagtgacaatggggagaagggaggccaggtgttcc
tggtggtcatgaactctgcatagagttcacagcaaatttcaatgtggatt
atgaaagtagaaaatgttcactttggtttattatattcaccttgtttggg
cagataatccatacaggaaggctgtgaaagggctaagaaagaaagttgat
ctcagagaaacaagaggactggggttctctagtgtagtgtactgtagtgt
ggcgtggtacagtgtgttgtggtgaagtacagtgtactctcctgtagtgt
ttgctgcttggtatgcatgaggccctgggctccctctccagtttagccca
cttagagaagctgaaattagaatatcagttgccagatcttaagacagatg
ttgggagggtgatggcggattgggagttgcaatctcggctaccaagggat
tacctcttctatataaattttgtgggttgcaatgggccaaatatctccaa
gtaactactaaagagtaataaatatgttctcaacacacagaatataatga
gatagatgcctgaatttgatggctgtgccagataccatcttcttcaggaa
tgtggtcttagcattgattccagaaaggaaagagagcaatggcatcagtc
tttaatgattggggaaagtgtatgagactcatgatgagcaacccaaaaca
ggataccaacttgccttaaataggttatttttttttaacctcgtttaatt
gcgttggattataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43162260_43162656
seq2: B6Ng01-334J23.b_49_445 (reverse)

seq1  GGTAGAAGGCAGACCTTCTCTAGGAGAAGAGAAGAGACCCAACCAACATA  50
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  GGTAGAAGGCAGACCTTCTTTAGGAGAAGAGAGGAGACCCAACCAACATA  50

seq1  CAGTCTTTCTAGGTGTCCCATGGAAACCTTATCTATGTATCTACATTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTCTAGGTGTCCCATGGAAACCTTATCTATGTATCTACATTCAA  100

seq1  ATATACTTTGTTGGAAAGGACAATGATTTGAGTTGCTCACAGACTCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTTGTTGGAAAGGACAATGATTTGAGTTGCTCACAGACTCTTCA  150

seq1  CACTTGGCCAAAATGACTTTAAGTGGTAAAAATCCTAGAGCCTTGCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGCCAAAATGACTTTAAGTGGTAAAAATCCTAGAGCCTTGCTTTG  200

seq1  AAGGAGCCAGGCTTCTGGTTTAGAGGCAAACAGTATATAAACTGAGCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCCAGGCTTCTGGTTTAGAGGCAAACAGTATATAAACTGAGCCCC  250

seq1  TACTTTGGTTCAAAGACAAGGATGGGCAGACATATCCTGTGCCTAGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGGTTCAAAGACAAGGATGGGCAGACATATCCTGTGCCTAGTGCT  300

seq1  TGGATCACGACCCTGTTAGTCACTCACCAGTAGAATTGATTTTCTTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCACGACCCTGTTAGTCACTCACCAGTAGAATTGATTTTCTTTAAT  350

seq1  CAACTCCTTGTACTTGTACAAAGCCTCACTGATGTCCTGGGGAATTC  397
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTTGTACTTGTACAAAGCCTCACTGATGTCCTGGGGAATTC  397

seq1: chr14_43008308_43009429
seq2: B6Ng01-334J23.g_66_1179

seq1  GAATTCTAGGAGAAGCTGCAGTGCAGCCAGATTTGGAGGAGTCCCAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAGAAGCTGCAGTGCAGCCAGATTTGGAGGAGTCCCAAAAC  50

seq1  CCTCCTGGGACAACTAGTCATGGAGTTTGTTCAGCAGCCATCTGTCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGGACAACTAGTCATGGAGTTTGTTCAGCAGCCATCTGTCTGCA  100

seq1  GGAGTCAGGGTGTTCTTCAGAGTCACATCTCTTCTCTAAAGCTTTGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAGGGTGTTCTTCAGAGTCACATCTCTTCTCTAAAGCTTTGAAGA  150

seq1  ACCACCTGTCTGAGGGCCAGAAGCTCTTGTGGGTATCTGCTGATGCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGTCTGAGGGCCAGAAGCTCTTGTGGGTATCTGCTGATGCAGAG  200

seq1  TTAGAAACAGCTCTACTAAGTACTCAGCCTGATGCACAGAGTCCTAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACAGCTCTACTAAGTACTCAGCCTGATGCACAGAGTCCTAAGGG  250

seq1  GAGACACAGCAAATACAGAGGTCTGAAGGAAAGGACAAAGTACCCAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACAGCAAATACAGAGGTCTGAAGGAAAGGACAAAGTACCCAAAAT  300

seq1  CTGAGTATCCAAGGCTGTATCCTCAGATTAGAAAGAGAACAGAAAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTATCCAAGGCTGTATCCTCAGATTAGAAAGAGAACAGAAAAAATG  350

seq1  GAGAGGGAACCCAGTAAGTGACAATGGGGAGAAGGGAGGCCAGGTGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAACCCAGTAAGTGACAATGGGGAGAAGGGAGGCCAGGTGTTCC  400

seq1  TGGTGGTCATGAACTCTGCATAGAGTTCACAGCAAATTTCAATGTGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTCATGAACTCTGCATAGAGTTCACAGCAAATTTCAATGTGGATT  450

seq1  ATGAAAGTAGAAAATGTTCACTTTGGTTTATTATATTCACCTTGTTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTAGAAAATGTTCACTTTGGTTTATTATATTCACCTTGTTTGGG  500

seq1  CAGATAATCCATACAGGAAGGCTGTGAAAGGGCTAAGAAAGAAAGTTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAATCCATACAGGAAGGCTGTGAAAGGGCTAAGAAAGAAAGTTGAT  550

seq1  CTCAGAGAAACAAGAGGACTGGGGTTCTCTAGTGTAGTGTACTGTAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAAACAAGAGGACTGGGGTTCTCTAGTGTAGTGTACTGTAGTGT  600

seq1  GGCGTGGTACAGTGTGTTGTGGTGAAGTACAGTGTACTCTCCTGTAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGTACAGTGTGTTGTGGTGAAGTACAGTGTACTCTCCTGTAGTGT  650

seq1  TTGCTGCTTGGTATGCATGAGGCCCTGGGCTCCCTCTCCAGTTTAGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTTGGTATGCATGAGGCCCTGGGCTCCCTCTCCAGTTTAGCCCA  700

seq1  CTTAGAGAAGCTGAAATTAGAATATCAGTTGCCAGATCTTAAGACAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGAAGCTGAAATTAGAATATCAGTTGCCAGATCTTAAGACAGATG  750

seq1  TTGGGAGGGTGATGGCGGATTGGGAGTTGCAATCTCGGCTACCAAGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGGTGATGGCGGATTGGGAGTTGCAATCTCGGCTACCAAGGGAT  800

seq1  TACCTCTTCTATATAAATTTTGTGGGTTGCAATGGGCCAAATATCTCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTTCTATATAAATTTTGTGGGTTGCAATGGGCCAAATATCTCCAA  850

seq1  GTAACTACTAAAGAGTAATAAATATGTTCTCAACACACAGAATATAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTACTAAAGAGTAATAAATATGTTCTCAACACACAGAATATAATGA  900

seq1  GATAGATGCCTGAA-TTGATGGCTGTGCCAGATACCATCTTCTTCAGGAA  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATAGATGCCTGAATTTGATGGCTGTGCCAGATACCATCTTCTTCAGGAA  950

seq1  TGTGGTCTTAGCATTGAATTCCAGAAAGGAAGGAAGAGCAATGGCATCAG  999
      |||||||||||||||| |||||||||||||| | ||||||||||||||||
seq2  TGTGGTCTTAGCATTG-ATTCCAGAAAGGAAAG-AGAGCAATGGCATCAG  998

seq1  TCTTTAATGATTGGGGAAAGTGTATGAGACTCAATGATGAGCAACCCAAA  1049
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTTTAATGATTGGGGAAAGTGTATGAGACTC-ATGATGAGCAACCCAAA  1047

seq1  ACAAGATAACCCAAACTTGGCCCTAATAGGGTATTTTTTTTAAACCTCCT  1099
      ||| ||||   | |||||| |   |||||| |||||||||| |||||| |
seq2  ACAGGATA---CCAACTTGCCTTAAATAGGTTATTTTTTTTTAACCTCGT  1094

seq1  TTATATGCGTTTGTGTATTATAA  1122
      |||  |||||   || |||||||
seq2  TTAATTGCGT---TGGATTATAA  1114