BAC Information

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BAC

Clone NameB6Ng01-336I14
Chromosome14 (Build37)
Map Location 43,170,181 - 43,235,973
singlet/doubletdoublet
Overlap geneLOC100042031
Upstream geneLOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298
Downstream geneEG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336I14.bB6Ng01-336I14.g
ACCGA121429GA121430
length1,1341,061
definitionB6Ng01-336I14.b B6Ng01-336I14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,234,827 - 43,235,973)(43,170,181 - 43,171,227)
sequence
gaattccttgtacttgtcaatggaatcagttattgactgcttcatttttt
ccatatccaacattgtcttctcatgttgtgatttaatgatggtgaattca
gtgttcatcctgtggtagagcatggcccaaagaataaatcatcctctgaa
ctaagcaaccaagtatcatgtgcaaaaaggctgtatctggaattcccaag
gaaattgtatgccacatccttgctccttccaactgggtcctattggtact
gattaaacttattatcttgggcagaggacagagagccaggggaccaaatg
gagatagctgacgctcaagaaatcttaggtgagcctgaaggaatacacta
gttctgtgaaatgtttctactagattgtcccacaggctttggtccttagt
tttaaggctttttttcccctcttagttttaaggcagggataatcctttgt
tcttattgctacatgaattctcagagggcataactagtatataacggaaa
aggctttataacacttcctactccaggagaatcctatgtgacaccaagga
aaacacagggaataaagaaccctgatgatcaatttgggcctctaagggct
caacactatcattccctacaaactgtgcatcacacacatcctaagacccc
atcaaaggtcccacaaccccagatcctgaacaaaacacacacaactaact
tcacacacagaaaaaaaattaaaatgccaaataaatccaggtaggctcca
tagtctcagagtacaatgaataaaacaagagtaaagcagtaatggcctgc
agacattggattcttacacagtaaggcagctattgtgaccaggtccttcc
agctgttgacaaaaccaatcagactccaagcacctcaaggccaagtacaa
aagaggatgaccatacacacacatcacttatctcatccaacaatttaaca
actgtcagacttctatatgatgtgagagatgacacactccattcatggga
gaaatgtgggtcaacagagagggcacaatacagtcacaagatactgggca
tattttacctgtagtcaaatcagtattcatgtcatgtcaagaatcaaaat
agtctcccgctcagcatttatcttcctgaataaa
gaattccacgggcctatgtttaggagtctggggacagggacccacaaaat
cctggacatccagacagtgctgagttgcagagagttcacagcaggtttga
cactgctggcctgcaaggataactgggcaaggggttctcagaatcttgga
catgcaggcactgctagaagtctcagaggagctgagcatggaggaggcca
gcaggctgagaactagccttgaaatcagggaatggggaatgctggattat
ctaagaggtgactagcccaggagtattgaggggccttctgttggagactt
agatggcaaggctctgtaggcaaaggctttttctacatgtaacccacagt
tggtttgatgagagagacagtccttggttgtaaactgtttattggttgtt
tttcatggaaatgaaagcataacatgtcttaaggttagactagaagttaa
gtaacttctgaggaaggaatgtccaggaagggaagcttattgactgaacc
ctaccatcttctaggtacctcattcgtagggagaaccctattctgttcta
aatgaccacaggccatgttcctatgtagagattttggttccatgaaagag
gcctggtaggaagcaggtgacacttttgccatctactgtgggtctgggac
ttccaacccactcaactttaccaaattctggacatggtagtctactgtcc
caggtgttagtctgagatttattgatgtgaggagacaccaggacatatgt
ttagtatgcgggtttcaatgcctaccctccacactgacacactgtttcta
acaaggccacaactcctaaaagtaccactcccatattcaagccaccacac
tcctctgcaatctcccaagacatttacctcactctgtcctactgttttcc
tttttctccttcacaaattatgtgttctattattttcttgaaatattcct
cctataacccaacactagtgcattaccttctatggatactgcagtttaaa
tgcacatctctagacattcaatgttaccatccacataagacacatgatgg
tggtatttgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43234827_43235973
seq2: B6Ng01-336I14.b_53_1186 (reverse)

seq1  TTTATATCAGGAAGATAAATGCTGAGCTGGAAGAACTTTTTCGAATCTTG  50
      ||||| ||||||||||||||||||||| |||   ||| ||| || |||| 
seq2  TTTAT-TCAGGAAGATAAATGCTGAGCGGGA--GACTATTTTGATTCTT-  46

seq1  GACATTGACATGAATACTGATTTGAACTACAGGTAAAATTATGCCCTGTA  100
      |||| ||||||||||||||||||| ||||||||||||| ||||||| |||
seq2  GACA-TGACATGAATACTGATTTG-ACTACAGGTAAAA-TATGCCCAGTA  93

seq1  TCCTGTTGACTGTATTGTGCCCTCTCTGTTGACCCACATTTTCTCCCATG  150
      || || |||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTTG-TGACTGTATTGTGCCCTCTCTGTTGACCCACA-TTTCTCCCATG  141

seq1  AATGGAGTGTGTCATCTCTCACAATCATTATAAGAAGTCTTGACAGTTGT  200
      |||||||||||||||||||||| |||| ||| ||||||| ||||||||||
seq2  AATGGAGTGTGTCATCTCTCAC-ATCA-TAT-AGAAGTC-TGACAGTTGT  187

seq1  TTAATTGTTGGATGAGATAAGTGCTGTGTGTTCTATGGTAATCCTCCTTT  250
      | ||||||||||||||||||||| |||||| | |||||| |||||| |||
seq2  TAAATTGTTGGATGAGATAAGTGATGTGTG-TGTATGGTCATCCTCTTTT  236

seq1  GTACTTGGCCTTGAGGTGCTTGGAGTCTGATTGGTTCTGTCAACAGCTGG  300
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTACTTGGCCTTGAGGTGCTTGGAGTCTGATTGGTTTTGTCAACAGCTGG  286

seq1  AAGGACCTGGTCACAATAGCTGCCTTACTGTGTAAGAATGCAATGTCTGC  350
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGGACCTGGTCACAATAGCTGCCTTACTGTGTAAGAATCCAATGTCTGC  336

seq1  AGGCCATTACTGCTTTACTCTTGTTTTATTCATTGTACTCTGAGACTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATTACTGCTTTACTCTTGTTTTATTCATTGTACTCTGAGACTATG  386

seq1  GAACCTACCTGGATTTATTTGGCATTTTAA-TTTTTTTCTGTGTGTGAAG  449
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGCCTACCTGGATTTATTTGGCATTTTAATTTTTTTTCTGTGTGTGAAG  436

seq1  TTAGTTGAGTGTGTATTGTTCAGGATCTGGGGTTGTGGGTCCTTCGATGG  499
      ||||||| |||||| |||||||||||||||||||||||| |||| |||||
seq2  TTAGTTGTGTGTGTTTTGTTCAGGATCTGGGGTTGTGGGACCTTTGATGG  486

seq1  GGTCTGAGGATTTGTGTGATGGACACTTTGTAGGGCATGATAGTGTTGAG  549
      ||||| ||||| ||||||||| ||| ||||||||| ||||||||||||||
seq2  GGTCTTAGGATGTGTGTGATGCACAGTTTGTAGGGAATGATAGTGTTGAG  536

seq1  CCCTTAGAGGCCCAAATTGATCATCAGGGTTCTTTATTCCCTGTGTTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGAGGCCCAAATTGATCATCAGGGTTCTTTATTCCCTGTGTTTTC  586

seq1  CTTGATGTCACATAGGATTCTCCTGGAGTAGGAAGTGTTATAAAGCCTTT  649
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGTCACATAGGATTCTCCTGGAGTAGGAAGTGTTATAAAGCCTTT  636

seq1  TCCGTTATATACTAGTTATGCCCTCTGAGAATTCATGTAGCAATAAGAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTATATACTAGTTATGCCCTCTGAGAATTCATGTAGCAATAAGAAC  686

seq1  AAAGGATTGTTCCTGCCTTAAAACTAAGAGGGGAAAAAAAGCCTTAAAAC  749
      |||||||| | |||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTATCCCTGCCTTAAAACTAAGAGGGGAAAAAAAGCCTTAAAAC  736

seq1  TAAGGACCAAAGCCTGTGGGACAGTCTAGTAGAAACATTTCACATAACTA  799
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  TAAGGACCAAAGCCTGTGGGACAATCTAGTAGAAACATTTCACAGAACTA  786

seq1  GTGTATTCCTTCAGGCTCACCTTCAGAGTTCTTGAGGGTCAGCTATCTCC  849
      ||||||||||||||||||||| | ||| |||||||| |||||||||||||
seq2  GTGTATTCCTTCAGGCTCACC-TAAGATTTCTTGAGCGTCAGCTATCTCC  835

seq1  ATTTTGTCCCCTGGCTCTCTGTCCTCTGCCCAAGATAATAAGTTTAATCA  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTCCCCTGGCTCTCTGTCCTCTGCCCAAGATAATAAGTTTAATCA  885

seq1  GTACCAAAAGGACCCAGTTGGAAGGAGCAAGGATGTGGCATACAATTTTC  949
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  GTACCAATAGGACCCAGTTGGAAGGAGCAAGGATGTGGCATACAATTTCC  935

seq1  TTGGGAATTCCAGATACAGCCTTTTTGCACATGATACTTGATTGCTTTGT  999
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  TTGGGAATTCCAGATACAGCCTTTTTGCACATGATACTTGGTTGCTTAGT  985

seq1  TCAGAGGAT-ATTTGCTCTTTGAGCCATGCTCTACCACAGGATGAACACT  1048
      ||||||||| ||||  |||||| |||||||||||||||||||||||||||
seq2  TCAGAGGATGATTTATTCTTTGGGCCATGCTCTACCACAGGATGAACACT  1035

seq1  GAATTCACCATCATTAAATCACAACATGAGAAGACAATGTTGGATATGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATCATTAAATCACAACATGAGAAGACAATGTTGGATATGGA  1085

seq1  AAAAATGAAGCAGTCAATAAGTGATTCCATTGACAAGTACAAGGAATTC  1147
      |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAATGAAGCAGTCAATAACTGATTCCATTGACAAGTACAAGGAATTC  1134

seq1: chr14_43170181_43171227
seq2: B6Ng01-336I14.g_69_1117

seq1  GAATTCCACGGGCCTATGTTTAGGAGTCTGGGGACAGGGACCCACAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGGCCTATGTTTAGGAGTCTGGGGACAGGGACCCACAAAAT  50

seq1  CCTGGACATCCAGACAGTGCTGGGTTGCAGAGAGTTCACAGCAGGTTTGA  100
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTGGACATCCAGACAGTGCTGAGTTGCAGAGAGTTCACAGCAGGTTTGA  100

seq1  CCCTGCTGGCCTGCAAGGATAACTGGGCAAGGGGTTCTCAGAATCTTGGA  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTGGCCTGCAAGGATAACTGGGCAAGGGGTTCTCAGAATCTTGGA  150

seq1  CATGCAGGCACTGCTAGAAGTCTCAGAGGAGCTGAGCATGGAGGAGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGCACTGCTAGAAGTCTCAGAGGAGCTGAGCATGGAGGAGGCCA  200

seq1  GCAGGCTAAGAACTAGCCCTGAAATCAGGGAATGGGGAATTCTGGATTAG  250
      ||||||| |||||||||| ||||||||||||||||||||| |||||||| 
seq2  GCAGGCTGAGAACTAGCCTTGAAATCAGGGAATGGGGAATGCTGGATTAT  250

seq1  CTCAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCTTCTGTTGGAGACTT  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCTTCTGTTGGAGACTT  300

seq1  AGATGGCAAGGCTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCCACAGT  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGATGGCAAGGCTCTGTAGGCAAAGGCTTTTTCTACATGTAACCCACAGT  350

seq1  TGGTTTGATGAGAGAGACAGTCCTTGGTTGTAAACTGTTTATTGATTGTT  400
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGTTTGATGAGAGAGACAGTCCTTGGTTGTAAACTGTTTATTGGTTGTT  400

seq1  TTTCATGGAAATGAAAGCATAACATGTCTTAAGGTTAGACTAGAAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGAAATGAAAGCATAACATGTCTTAAGGTTAGACTAGAAGTTAA  450

seq1  GTAACTTCTGAGGAAGGAATGTCCAGGAAGGGAAGCTTATTGACTGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTCTGAGGAAGGAATGTCCAGGAAGGGAAGCTTATTGACTGAACC  500

seq1  CTACCATCTTCTA-TTACCTCATTAGCAGGGAGAACCCTATTCTCTTCTA  549
      |||||||||||||  ||||||||| | ||||||||||||||||| |||||
seq2  CTACCATCTTCTAGGTACCTCATTCGTAGGGAGAACCCTATTCTGTTCTA  550

seq1  AATAACCACAGGCCATGTTCCTATATACAGATTTTGGTCCCATGAAAGAG  599
      ||| |||||||||||||||||||| || |||||||||| |||||||||||
seq2  AATGACCACAGGCCATGTTCCTATGTAGAGATTTTGGTTCCATGAAAGAG  600

seq1  GCCTGGTAGGAAGCAGGTAACACTTTTGCCATCTACTGTGGGTCTGGGAC  649
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCCTGGTAGGAAGCAGGTGACACTTTTGCCATCTACTGTGGGTCTGGGAC  650

seq1  TTCCAACCCACTCAACTTTACCAAATTCTGGACATGGTAGTCTACTGTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACCCACTCAACTTTACCAAATTCTGGACATGGTAGTCTACTGTCC  700

seq1  CAGGTGTTAGTCTGAGATTTATTGATGTGAGGAGACACCAGGACATATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTTAGTCTGAGATTTATTGATGTGAGGAGACACCAGGACATATGT  750

seq1  TTAGTATGCGGGTCTCAATGCCTACCCTCCACACTGACACACTGTTTCTA  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTAGTATGCGGGTTTCAATGCCTACCCTCCACACTGACACACTGTTTCTA  800

seq1  ACAAGGCCACAACTCCTAAAAGTACCACTCCCATATTCAAGCCACCACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCCACAACTCCTAAAAGTACCACTCCCATATTCAAGCCACCACAC  850

seq1  TCCTCTGCAATCTCTCAAGACATTTACCTCACTCTGTCCTACTGTTTTCC  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCAATCTCCCAAGACATTTACCTCACTCTGTCCTACTGTTTTCC  900

seq1  TTTTTCTCCTTCACAAATTATGTGTTCTATTATTTTCTTGAAATA-TCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTTCTCCTTCACAAATTATGTGTTCTATTATTTTCTTGAAATATTCCT  950

seq1  CCTATAACCCAACACTAGTGCATTACCTTCTATGGATACTGCAGTTTAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAACCCAACACTAGTGCATTACCTTCTATGGATACTGCAGTTTAAA  1000

seq1  TGCACATCTCTAGACATTCAATTTTACCATCCACATAAGACACATGATG  1047
      |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGCACATCTCTAGACATTCAATGTTACCATCCACATAAGACACATGATG  1049