BAC Information

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BAC

Clone NameB6Ng01-337K12
Chromosome14 (Build37)
Map Location 123,836,881 - 124,034,682
singlet/doubletdoublet
Overlap geneVgcnl1
Upstream geneEG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneItgbl1, LOC668700, Fgf14, GA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337K12.bB6Ng01-337K12.g
ACCGA122212GA122213
length757554
definitionB6Ng01-337K12.b B6Ng01-337K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,033,930 - 124,034,682)(123,836,881 - 123,837,140)
sequence
gaattcctttttctcaagcagatttgatacaactggttggcatacgtgag
gctgttcattgttttctagaaacaaacactggagttgagacctgtatcag
tcattgcttatgaaaaacatctcaggttttacagcattatatccttctgg
ggtcttaacaaagagcacatggcatttcctaaccatagttccagcttgtc
actatattgaccaatatcttcattgttttatcagctattttatttctagt
gttcttttttgtttccatgtgtatatgtggggaatgggtgtttttatgag
tttgtgcatggatatggaggcagacacataaacatatgtatctcaggggt
ccaaggttgatttggggagtatcctccttgatcaatttccacctttatat
attgaagcaagttcctccacttgaacccagagctagctgtctaactaggc
agctttctccaggaatcctcaatctcagcttcctgagaaatgggagtgca
tagattctgggaatccaaaccctagtcttcacatttgagtaacacgtgct
ttatcattcagccatataatcagcttctccaatatttctttattttttta
aaaaaggaggaagagagaaagaagcagatagactcttgaaaactaggttt
tcagagactcttgaggacaaggatcaggtcccatttcccatcagaactct
ctctgtgctaagttaatacatgctctaggggaaaaaaaataacaactctc
cttgttt
gaattctccatctcacttgagttgcaggggcaaggatgtcttcatggtga
gcttttcaagtaattttgggtccttttatgttttcatctaattattcatt
ttattgtttttaattctatgtaagtatgcacacatgcccttgcttgtagt
aaactctcattggtgatgtctctttacatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatgtatagagatatata
tatagagagagttatatatacgcgggggtgtgtgtgcatatatatataga
tatatacacatatatatatatatatatatatatatatatgggcacatata
tatatgtatagctctctatatagatatatatgtctatgtatctctataga
tatatagatatatgcgtatatatatatagagacatatatatatatacaga
gaggcgggcgcgggggcgaccctctagagatatcgatatgatcaaaacga
tatatatagagagagacacatatatatatatatatatatatatatatata
cata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_124033930_124034682
seq2: B6Ng01-337K12.b_48_804 (reverse)

seq1  AAACAAGGAGAGTTGTT-TTTTTTTTCCCCTAGAGCCTGTATTTACTTAG  49
      ||||||||||||||||| |||||||||||||||||| |||||| ||||||
seq2  AAACAAGGAGAGTTGTTATTTTTTTTCCCCTAGAGCATGTATTAACTTAG  50

seq1  CACAGAGAGAGTTCTGATGGGAAATGGGACCTGATCCTTGTCCTCAAGAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAGAGTTCTGATGGGAAATGGGACCTGATCCTTGTCCTCAAGAG  100

seq1  TCTCTG-AAACCTAGTTTTCAAGAGTCTATCTGCTTCTTTCTCTCTTCCT  148
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAAACCTAGTTTTCAAGAGTCTATCTGCTTCTTTCTCTCTTCCT  150

seq1  CCTTTTTT-AAAAAATAAAG-AATATTGGAGAAGCTGATTATATGGCTGA  196
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  CCTTTTTTAAAAAAATAAAGAAATATTGGAGAAGCTGATTATATGGCTGA  200

seq1  ATGATAAAGCACGTGTTACTCAAATGTGAAGACTAGGGTTTGGATTCCCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAAGCACGTGTTACTCAAATGTGAAGACTAGGGTTTGGATTCCCA  250

seq1  GAATCTATGCACTCCCATTTCTCAGGAAGCTGAGATTGAGGATTCCTGGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTATGCACTCCCATTTCTCAGGAAGCTGAGATTGAGGATTCCTGGA  300

seq1  GAAAGCTGCCTAGTTAGACAGCTAGCTCTGGGTTCAAGTGGAGGAACTTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGCCTAGTTAGACAGCTAGCTCTGGGTTCAAGTGGAGGAACTTG  350

seq1  CTTCAATATATAAAGGTGGAAATTGATCAAGGAGGATACTCCCCAAATCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATATATAAAGGTGGAAATTGATCAAGGAGGATACTCCCCAAATCA  400

seq1  ACCTTGGACCCCTGAGATACATATGTTTATGTGTCTGCCTCCATATCCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGACCCCTGAGATACATATGTTTATGTGTCTGCCTCCATATCCAT  450

seq1  GCACAAACTCATAAAAACACCCATTCCCCACATATACACATGGAAACAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAACTCATAAAAACACCCATTCCCCACATATACACATGGAAACAAA  500

seq1  AAAGAACACTAGAAATAAAATAGCTGATAAAACAATGAAGATATTGGTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACACTAGAAATAAAATAGCTGATAAAACAATGAAGATATTGGTCA  550

seq1  ATATAGTGACAAGCTGGAACTATGGTTAGGAAATGCCATGTGCTCTTTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTGACAAGCTGGAACTATGGTTAGGAAATGCCATGTGCTCTTTGT  600

seq1  TAAGACCCCAGAAGGATATAATGCTGTAAAACCTGAGATGTTTTTCATAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCCCAGAAGGATATAATGCTGTAAAACCTGAGATGTTTTTCATAA  650

seq1  GCAATGACTGATACAGGTCTCAACTCCAGTGTTTGTTTCTAGAAAACAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGACTGATACAGGTCTCAACTCCAGTGTTTGTTTCTAGAAAACAAT  700

seq1  GAACAGCCTCACGTATGCCAACCAGTTGTATCAAATCTGCTTGAGAAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCCTCACGTATGCCAACCAGTTGTATCAAATCTGCTTGAGAAAAA  750

seq1  GGAATTC  753
      |||||||
seq2  GGAATTC  757

seq1: chr14_123836881_123837140
seq2: B6Ng01-337K12.g_67_620

seq1  GAATTCTCCATCTCACTTGAGTTGCAGGGGCAAGGATGTCTTCATGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATCTCACTTGAGTTGCAGGGGCAAGGATGTCTTCATGGTGA  50

seq1  GCTTTTCAAGTAATTTTGGGTCCTTTTATGTTTTCATCTAATTATTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCAAGTAATTTTGGGTCCTTTTATGTTTTCATCTAATTATTCATT  100

seq1  TTATTGTTTTTAATTCTATGTAAGTATGCACACATGCCCTTGCTTGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTTTTAATTCTATGTAAGTATGCACACATGCCCTTGCTTGTAGT  150

seq1  AAACTCTCATTGGTGATGTCTCTTTACATATATATATATATATATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCATTGGTGATGTCTCTTTACATATATATATATATATATATATA  200

seq1  TATATATATATATATATATATATATATATGTGTATATATATATATATATA  250
      ||||||||||||||||||||||||||||  | ||||| |||| | |||||
seq2  TATATATATATATATATATATATATATA--TATATATGTATAGAGATATA  248

seq1  TATATACATA----------------------------------------  260
      |||||| | |                                        
seq2  TATATAGAGAGAGTTATATATACGCGGGGGTGTGTGTGCATATATATATA  298

seq1  --------------------------------------------------  260
                                                        
seq2  GATATATACACATATATATATATATATATATATATATATATGGGCACATA  348

seq1  --------------------------------------------------  260
                                                        
seq2  TATATATGTATAGCTCTCTATATAGATATATATGTCTATGTATCTCTATA  398

seq1  --------------------------------------------------  260
                                                        
seq2  GATATATAGATATATGCGTATATATATATAGAGACATATATATATATACA  448

seq1  --------------------------------------------------  260
                                                        
seq2  GAGAGGCGGGCGCGGGGGCGACCCTCTAGAGATATCGATATGATCAAAAC  498

seq1  --------------------------------------------------  260
                                                        
seq2  GATATATATAGAGAGAGACACATATATATATATATATATATATATATATA  548

seq1  ------  260
            
seq2  TACATA  554