BAC Information

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BAC

Clone NameB6Ng01-338H21
Chromosome14 (Build37)
Map Location 55,512,509 - 55,722,526
singlet/doubletdoublet
Overlap genePabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2
Upstream geneA630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2
Downstream geneJph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338H21.bB6Ng01-338H21.g
ACCGA122778GA122779
length1,129669
definitionB6Ng01-338H21.b B6Ng01-338H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,721,391 - 55,722,526)(55,512,509 - 55,513,173)
sequence
gaattccatgaaggacggctatagtctgtcatcgtgctgctgccctggtg
tgtaggcagtccttaacatctagtggggttcagggagctttgtgaggggc
tggaagataaacagagcacagtggtcaccttccagccaccactagagccc
tatacagatgaacctcttccccatccccacaggtcgccaccaacacagac
accagccgaaatgcaggcaacgctgtcctgttggaaacagtgcttaccat
catggccatccactctgctgctggcctccgggtagcattccgtgctcatg
tgctcttctgctggggccccacctcctcagctggtcctggtccctggcgt
ttccctaacccccatcatggaggagatcccactgaacaagtggcttcttc
cctgactgtctccatcttcttcttcccataggttctagctgttaacattc
ttggtcgtttcttgctcaacaatgacaagaatattaggtaacagccagga
tctggctagattgtaccactagacacctgggcattcctcccttctgaccc
acctacctcttaggtatactggggagggggcaacacagggtatcaaggca
gatgaccctgtgtgatatggcctctcttcccctgaccaggtatgtggctc
tgacatcattgctgcagctggtgcagtctgaccacagtgctgtacaacgt
caccggtccactgtggtggagtgtctacaggaaacggacgcctcccttag
caggtaggcagagggagaagggagaaggggacagggcagaggacacagtg
actggtggccgaaaactcaaaccagctcagagcatctggcataagaacta
gaggaaaagaagcctggaaacccgggagccatctgcagggatgcctctct
ctccccaggcgggccctggagctgagcctggctctggtgaacagctccaa
tgtacgagccatgatgcagagctgcaggcctttctggagtctgccccctg
atcttcggctgattgtgcctcagcattctgttgctgcgagaggtaagtga
caatggcttcagtcaaaggctgcggcctggggaggggcggtacagcactg
atgagccattgtctccttaagtttgctcc
gaattccctagttttaagccaggccatcctttcgagagcaaggttcacct
gtcgcacaacgggtgtctgcccgtcgaatcccataagccaatcggcatcc
aagaatgggccacttcggtgaggcgtttggaagattggtccttttcgcct
caccagtcagaggccaattgcggagcatcctccatgttgtgggcccgccc
atgggtggaggatgaacggaaggtcgtcacagtgcgggcgtattgttacc
taaggactcaacaggaggtggggtgtgttgattgacaggcatatttcacc
taccgggtttagagaatttggcacagtggcccgccttagaggtggggcct
cgtttgattgccaagtagaattccccaatagtattcgagctcggggtaac
gggcaggctgactgactaatgaatcctcggcgtggccggctcagttctcc
aatcgccgatcggcgggccccagtctgagcggcgatggcggcggcggcgg
cggcggcagcagcagcgggggctgcgggcggtcggggctccgggccgggg
cggcggcgccatcttgtgcccggggccggtggggaggccggggaggggga
cccggggggcgcaggggaactacgggaacggtctggagtctgaaggagct
ggagctggggaaatgctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55721391_55722526
seq2: B6Ng01-338H21.b_45_1173 (reverse)

seq1  GGAGCAAACCT-AGGGGAC-ATGGCTCATCAGTGCTGTCACTGCCCCTCC  48
      ||||||||| | ||| ||| |||||||||||||||||| || ||||||||
seq2  GGAGCAAACTTAAGGAGACAATGGCTCATCAGTGCTGT-ACCGCCCCTCC  49

seq1  CCAGGCCGCAGCCTCTGACTCGAAGCCATTTGTCACTTACCTCTCCGCAG  98
      |||||||||||||| ||||| ||||||| ||||||||||||||| |||||
seq2  CCAGGCCGCAGCCTTTGACT-GAAGCCA-TTGTCACTTACCTCT-CGCAG  96

seq1  CCAACAGAATGCCTGAGGCACAATCAGCCCGAAGATCAGGGGGGCAGGAC  148
       |||||||||| ||||||||||||||| |||||||||| ||||||| |||
seq2  -CAACAGAATG-CTGAGGCACAATCAG-CCGAAGATCA-GGGGGCA-GAC  141

seq1  TCCAGAAAGGCCTGCAGCTCCTGCATCATGGCTCGTACATTGGAGCTGTT  198
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCCAGAAAGGCCTGCAGCT-CTGCATCATGGCTCGTACATTGGAGCTGTT  190

seq1  CACCAGAGCCAGGCTCAGCTCCAGGGCCCGCCTGGGGAGAGAGAGGCATC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGCCAGGCTCAGCTCCAGGGCCCGCCTGGGGAGAGAGAGGCATC  240

seq1  CCTGCAGATGGCTCCCGGGTTTCCAGGCTTCTTTTCCTCTAGTTCTTATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGATGGCTCCCGGGTTTCCAGGCTTCTTTTCCTCTAGTTCTTATG  290

seq1  CCAGATGCTCTGAGCTGGTTTGAG-TTTCGGCCACCAGTCACTGTGTCCT  347
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCAGATGCTCTGAGCTGGTTTGAGTTTTCGGCCACCAGTCACTGTGTCCT  340

seq1  CTGCCCTGTCCCCTTCTCCCTTCTCCCTCTGCCTACCTGCTAAGGGAGGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGTCCCCTTCTCCCTTCTCCCTCTGCCTACCTGCTAAGGGAGGC  390

seq1  GTCCGTTTCCTGTAGACACTCCACCACAGTGGACCGGTGACGTTGTACAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTTTCCTGTAGACACTCCACCACAGTGGACCGGTGACGTTGTACAG  440

seq1  CACTGTGGTCAGACTGCACCAGCTGCAGCAATGATGTCAGAGCCACATAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGTCAGACTGCACCAGCTGCAGCAATGATGTCAGAGCCACATAC  490

seq1  CTGGTCAGGGGAAGAGAGGCCATATCACACAGGGTCATCTGCCTTGATAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAGGGGAAGAGAGGCCATATCACACAGGGTCATCTGCCTTGATAC  540

seq1  CCTGTGTTGCCCCCTCCCCAGTATACCTAAGAGGTAGGTGGGTCAGAAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTGCCCCCTCCCCAGTATACCTAAGAGGTAGGTGGGTCAGAAGG  590

seq1  GAGGAATGCCCAGGTGTCTAGTGGTACAATCTAGCCAGATCCTGGCTGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGCCCAGGTGTCTAGTGGTACAATCTAGCCAGATCCTGGCTGTT  640

seq1  ACCTAATATTCTTGTCATTGTTGAGCAAGAAACGACCAAGAATGTTAACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATATTCTTGTCATTGTTGAGCAAGAAACGACCAAGAATGTTAACA  690

seq1  GCTAGAACCTATGGGAAGAAGAAGATGGAGACAGTCAGGGAAGAAGCCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAACCTATGGGAAGAAGAAGATGGAGACAGTCAGGGAAGAAGCCAC  740

seq1  TTGTTCAGTGGGATCTCCTCCATGATGGGGGTTAGGGAAACGCCAGGGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGTGGGATCTCCTCCATGATGGGGGTTAGGGAAACGCCAGGGAC  790

seq1  CAGGACCAGCTGAGGAGGTGGGGCCCCAGCAGAAGAGCACATGAGCACGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCAGCTGAGGAGGTGGGGCCCCAGCAGAAGAGCACATGAGCACGG  840

seq1  AATGCTACCCGGAGGCCAGCAGCAGAGTGGATGGCCATGATGGTAAGCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTACCCGGAGGCCAGCAGCAGAGTGGATGGCCATGATGGTAAGCAC  890

seq1  TGTTTCCAACAGGACAGCGTTGCCTGCATTTCGGCTGGTGTCTGTGTTGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCAACAGGACAGCGTTGCCTGCATTTCGGCTGGTGTCTGTGTTGG  940

seq1  TGGCGACCTGTGGGGATGGGGAAGAGGTTCATCTGTATAGGGCTCTAGTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGACCTGTGGGGATGGGGAAGAGGTTCATCTGTATAGGGCTCTAGTG  990

seq1  GTGGCTGGAAGGTGACCACTGTGCTCTGTTTATCTTCCAGCCCCTCACAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGGAAGGTGACCACTGTGCTCTGTTTATCTTCCAGCCCCTCACAA  1040

seq1  AGCTCCCTGAACCCCACTAGATGTTAAGGACTGCCTACACACCAGGGCAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCTGAACCCCACTAGATGTTAAGGACTGCCTACACACCAGGGCAG  1090

seq1  CAGCACGATGACAGACTATAGCCGTCCTTCATGGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||
seq2  CAGCACGATGACAGACTATAGCCGTCCTTCATGGAATTC  1129

seq1: chr14_55512509_55513173
seq2: B6Ng01-338H21.g_65_733

seq1  GAATTCCCTAGTTTTAAGCCAGGCCATCCTTTCGAGAGCAAGGTTCACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGTTTTAAGCCAGGCCATCCTTTCGAGAGCAAGGTTCACCT  50

seq1  GTCGCACAACGGGTGTCTGCCCGTCGAATCCCATAAGCCAATCGGCATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCACAACGGGTGTCTGCCCGTCGAATCCCATAAGCCAATCGGCATCC  100

seq1  AAGAATGGGCCACTTCGGTGAGGCGTTTGGAAGATTGGTCCTTTTCGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGGCCACTTCGGTGAGGCGTTTGGAAGATTGGTCCTTTTCGCCT  150

seq1  CACCAGTCAGAGGCCAATTGCGGAGCATCCTCCATGTTGTGGGCCCGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTCAGAGGCCAATTGCGGAGCATCCTCCATGTTGTGGGCCCGCCC  200

seq1  ATGGGTGGAGGATGAACGGAAGGTCGTCACAGTGCGGGCGTATTGTTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGGAGGATGAACGGAAGGTCGTCACAGTGCGGGCGTATTGTTACC  250

seq1  TAAGGACTCAACAGGAGGTGGGGTGTGTTGATTGACAGGCATATTTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACTCAACAGGAGGTGGGGTGTGTTGATTGACAGGCATATTTCACC  300

seq1  TACCGGGTTTAGAGAATTTGGCACAGTGGCCCGCCTTAGAGGTGGGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGGGTTTAGAGAATTTGGCACAGTGGCCCGCCTTAGAGGTGGGGCCT  350

seq1  CGTTTGATTGCCAAGTAGAATTCCCCAATAGTATTCGAGCTCGGGGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGATTGCCAAGTAGAATTCCCCAATAGTATTCGAGCTCGGGGTAAC  400

seq1  GGGCAGGCTGACTGACTAATGAATCCTCGGCGTGGCCGGCTCAGTTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGCTGACTGACTAATGAATCCTCGGCGTGGCCGGCTCAGTTCTCC  450

seq1  AATCGCCGATCGGCGGGCCCCAGTCTGAGCGGCGATGGCGGCGGCGGCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCCGATCGGCGGGCCCCAGTCTGAGCGGCGATGGCGGCGGCGGCGG  500

seq1  CGGCGGCAGCAGCAGCGGGGGCTGCGGGCGGTCGGGGCTCCGGGCCGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGGCAGCAGCAGCGGGGGCTGCGGGCGGTCGGGGCTCCGGGCCGGGG  550

seq1  CGGCGGCGCCATCTTGTGCCCGGGGCCGGTGGGGAGGCCGGGGAGGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGGCGCCATCTTGTGCCCGGGGCCGGTGGGGAGGCCGGGGAGGGGGA  600

seq1  CCCGGGGGGCGCAGGGG-ACTACGGGAACGGCCTGGAGTCTG-AGGAGCT  648
      ||||||||||||||||| ||||||||||||| |||||||||| |||||||
seq2  CCCGGGGGGCGCAGGGGAACTACGGGAACGGTCTGGAGTCTGAAGGAGCT  650

seq1  GGAGCCTGGGGA---GCTGC  665
      |||| |||||||   |||||
seq2  GGAG-CTGGGGAAATGCTGC  669