BAC Information

Click to search

BAC

Clone NameB6Ng01-338O22
Chromosome14 (Build37)
Map Location 108,878,812 - 108,879,959
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneEG668761, Slitrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338O22.bB6Ng01-338O22.g
ACCGA123075GA123076
length4301,131
definitionB6Ng01-338O22.b B6Ng01-338O22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctatccccttcaaggccttcaatcctttccccaagtctttcagaaaagtc
ctcaagctctagccagtgcttgtctgtggttcttggcatctgtctgaatc
atctgttgggtagggcttctcagaggaaagccatgctaggctcccctctg
caagcataccagagtatcattagtagtatttagggattagtccttgccca
tgctatgggactctacttggacctatttcttggccattccataggtctgt
gtttcatctaccttccctgcatttcttataaacaggataaaatttggtgt
tgaaatttgtatttgtgtgtgtggggtgtgtgtatgtgtgtgaggggatt
tggtatccctatcactccactgcggatcctgcctaggtaaaacatgtgtc
ctcatcccgttccatttcttgtcagctgtt

gaattccacagagtccaagcattgacactgcaggttcagaaatacgaaat
ttctgtatctcacagttaattgaaatcagacacctgctaccatgcctctg
gaatgcatagcatttaagtgaacagctccccccccaaaaaaaaaaaacct
aggttttttttttattatttatttactgttggaaatatagttaagtagac
tgaatacttgtttgagtctgtacatgtgttgccactataagtcatgacat
taaggaaaatgattggaattaacctgatgaacaagtaaagcaaatggtac
tatttgaatatctaatcttagcaacttctcacaaacatccccgttctttg
cagtagcaggcatttgtgtcaagtatattaagtaccaagagtcagccatc
caaggctacattgaatgcatgggtttgcctgtcatgttgctcattgtagc
attctgtctttgttttttcttgataaccgttttactttgtgatgaatcca
acgttttgttacagagctttaaacaggttctttcagccttcctggacaaa
tcatctgcattacaatgacttcaatggtgtgttaaaaatttaggcctcag
gaggccatcacagactttgacagaatctttgattttagactaaagaaatt
atgattatatgaactatataaataatagtcctcccaaccaaaactggaat
gcataggctttttaaaaatagctacctaacattggatatttttaaatata
tatgttatttcaggtaccataacccaaaagatgatagaaaacatatgaaa
gctattataaatattgtatcaacttaataaagcaaatgttatataattat
ataattattatctagacatctaattattttaccaatattaataacatata
atgttcaactccattttattttaatttaagatgttgaaaaaattactata
gttagttcaatctgtattcataagaaaaacattagtaaaaaaattcaaaa
gaaaacctcagaatatatcattttattcttaatttaaagttcacctatgc
atattttagcaaaatataattaatcaaatagaatgaataccactgtaatt
atatagaagtgacttatttggatacatgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_108878812_108879959
seq2: B6Ng01-338O22.g_67_1197 (reverse)

seq1  GTACATGATACAAAATTAGTCACTTCTATATATATTTACAAGTGTATTCA  50
      |||||||   | |||| |||||||||  |||||| |||||   |||||||
seq2  GTACATGTATCCAAATAAGTCACTTC--TATATAATTACAGTGGTATTCA  48

seq1  TTTCCTATTTTGATTTATTTATATTTTTGCTTAAAATTATGCCATAGTGA  100
      ||  ||| ||||| ||| ||||| |||||||  ||| |||| |||||   
seq2  TT--CTA-TTTGA-TTAATTATA-TTTTGCT--AAAATATG-CATAGGTG  90

seq1  AACTTTAAAATTTAAGAATAAAATGATATATTCCTGAGGTTTTCTTTTGA  150
      |||||||||  ||||||||||||||||||||| |||||||||||||||||
seq2  AACTTTAAA--TTAAGAATAAAATGATATATT-CTGAGGTTTTCTTTTGA  137

seq1  ATTTTTTTTACTAATGTTTTTCTTATGAATACAGATTGAACTAACTATAG  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTTTTTACTAATGTTTTTCTTATGAATACAGATTGAACTAACTATAG  186

seq1  TTAATTTTTTTCAAACATCTTAAATTAAAATAAAATGGAGTTGAACATTA  250
       |||||||||   |||||||||||||||||||||||||||||||||||||
seq2  -TAATTTTTT--CAACATCTTAAATTAAAATAAAATGGAGTTGAACATTA  233

seq1  TATGTTATTAATATTGGTAAAATAATTAGATGTCTAGATAATAATTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATTAATATTGGTAAAATAATTAGATGTCTAGATAATAATTATAT  283

seq1  AATTATATAACATTTGCTTTATTAAGTTGATACAATATTTATAATAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATAACATTTGCTTTATTAAGTTGATACAATATTTATAATAGCTT  333

seq1  TCATATGTTTTCTATCATCTTTTGGGTTATGGTACCTGAAATAACATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGTTTTCTATCATCTTTTGGGTTATGGTACCTGAAATAACATATA  383

seq1  TATTTAAAAATATCCAATGTTAGGTAGCTATTTTTAAAAAGCCTATGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAAATATCCAATGTTAGGTAGCTATTTTTAAAAAGCCTATGCAT  433

seq1  TCCAGTTTTGGTTGGGAGGACTATTATTTATATAGTTCATATAATCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTTGGTTGGGAGGACTATTATTTATATAGTTCATATAATCATAA  483

seq1  TTTCTTTAGTCTAAAATCAAAGATTCTGTCAAAGTCTGTGATGGCCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAGTCTAAAATCAAAGATTCTGTCAAAGTCTGTGATGGCCTCCT  533

seq1  GAGGCCTAAATTTTTAACACACCATTGAAGTCATTGTAATGCAGATGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTAAATTTTTAACACACCATTGAAGTCATTGTAATGCAGATGATT  583

seq1  TGTCCAGGAAGGCTGAAAGAACCTGTTTAAAGCTCTGTAACAAAACGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGAAGGCTGAAAGAACCTGTTTAAAGCTCTGTAACAAAACGTTG  633

seq1  GATTCATCACAAAGTAAAACGGTTATCAAGAAAAAACAAAGACAGAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATCACAAAGTAAAACGGTTATCAAGAAAAAACAAAGACAGAATGC  683

seq1  TACAATGAGCAACATGACAGGCAAACCCATGCATTCAATGTAGCCTTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGAGCAACATGACAGGCAAACCCATGCATTCAATGTAGCCTTGGA  733

seq1  TGGCTGACTCTTGGTACTTAATATACTTGACACAAATGCCTGCTACTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGACTCTTGGTACTTAATATACTTGACACAAATGCCTGCTACTGCA  783

seq1  AAGAACGGGGATGTTTGTGAGAAGTTGCTAAGATTAGATATTCAAATAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACGGGGATGTTTGTGAGAAGTTGCTAAGATTAGATATTCAAATAGT  833

seq1  ACCATTTGCTTTACTTGTTCATCAGGTTAATTCCAATCATTTTCCTTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGCTTTACTTGTTCATCAGGTTAATTCCAATCATTTTCCTTAAT  883

seq1  GTCATGACTTATAGTGGCAACACATGTACAGACTCAAACAAGTATTCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGACTTATAGTGGCAACACATGTACAGACTCAAACAAGTATTCAGT  933

seq1  CTACTTAACTATATTTCCAACAGTAAATAAATAATAAAAAAAAAACCTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAACTATATTTCCAACAGTAAATAAATAATAAAAAAAAAACCTAG  983

seq1  GTTTTTTTTTTTTGGGGGGGGAGCTGTTCACTTAAATGCTATGCATTCCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTGGGGGGGGAGCTGTTCACTTAAATGCTATGCATTCCA  1033

seq1  GAGGCATGGTAGCAGGTGTCTGATTTCAATTAACTGTGAGATACAGAAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATGGTAGCAGGTGTCTGATTTCAATTAACTGTGAGATACAGAAAT  1083

seq1  TTCGTATTTCTGAACCTGCAGTGTCAATGCTTGGACTCTGTGGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTATTTCTGAACCTGCAGTGTCAATGCTTGGACTCTGTGGAATTC  1131


| Home | SequenceCutter | Blast | Download |