BAC Information

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BAC

Clone NameB6Ng01-339B21
Chromosome14 (Build37)5 (Build37)
Map Location 6,892,107 - 6,892,526129,911,392 - 129,912,416
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702, LOC100041363, LOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825, LOC100041421, LOC100041817, LOC100041431, LOC100041438, LOC100041442, LOC100041848, LOC100041456, LOC100041758, LOC100041470, LOC100041804, LOC100041487, LOC100041747, LOC100041507, LOC100041836
Downstream geneLOC100041728, LOC100041774, LOC100041530, LOC100041540, LOC100041840, EG666844, LOC666851, LOC100041569, LOC100041970, LOC100042000, EG666874, B930046C15Rik, LOC100041600, LOC100041958, LOC100041964, LOC546590, LOC666906, LOC100042024, LOC100041664, LOC100042077, LOC100041675, LOC666329, EG666833, LOC100042043, EG666918, LOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339B21.bB6Ng01-339B21.g
ACCGA123200GA123201
length9601,024
definitionB6Ng01-339B21.b B6Ng01-339B21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,892,107 - 6,892,526)(129,911,392 - 129,912,416)
sequence
gaattcacactgctgtgcacaaacccacacacagacacagacacccaagt
gaaaaagaaaagtcaaaaagtgtaacaacatgcttgaaaaacagcagttc
gcttctggtctgggatagctcagttggcctagaggcatgaagggctgggt
ttgagtgagccccagtgttcatctgtgatcccagtgctgaggtaaaggca
acatggtcagaatgatggagatctgtgagttatcatctggctgctaacta
aaagcaagggtggaacttgtagactgctcactcaccccacttaaccctca
ttcaaagtaaatgaaggacaggctacttaggcagcaggtaagaggccact
gaacaaagtatagtcacaaacaactgcagcgtcattggttagttttgggc
ccttcgatatggctcctcagaaaacacactgaagtttagttagtttaggc
agagaattcgtgcatgcacacacatacacctgaatgcatgtacaaacaac
acagctgcacatgtgcatgtacagatgtatcatacagttgtaaacataca
catgcacacacatgtacacacatacattctatagaggtacgtatggagat
ggtgggtatatacatgttatatacagatatgtcaccatcttatacatact
tatatacacacatgttgcattaaatctcaaatccaaatatgccccagtaa
tggaaacacaactcaattaatatgaatacaagctgtgcacctagattggg
cagatctaccactacactaccatctgccccatctatgagaccccttagag
cttgtggtttctccgggccacgtgcttctgctcagctgttcttccacctc
cttctccatcctcctctctctctcccacacctccttcttctctctcccca
ctatcagctccaccgtcccttcctctgcccaatcaccagttttagccttt
attttaccca
gaattcaggcctccggatgtagggatgctgagagttacatcgaagcagct
ttgtaccgcatggggacagcccaaggcaccgacagaaaaacccagtctgc
gagatggccagaaacactcgctgtacagtttcctgttatactggccagtg
gatctcggcttttgaacaatctgctttcgattgtgattctgccacttgag
actgaattaggaggaaataaatccatctgattcatgtggcacggtgtgag
gattttcaggggctttaagctggagcagagctcagtactacaaatgaagt
ctcagagcttgccacgctgactgctgccagagctccttaccactgaaaag
agatggctgtgtgtttacaaccagcccaggggaccctgagcaaaccacta
tgtcctgtaggtctcgtagacctaggtgcagagtggacctctaaatgcat
ggtacacatcactccacaactacactaacccagggagttactgtgtccac
aaggaaacatagcctctggcgcgcgcgcacgcacacacatgcacacgcac
acgcacacgcacgcacacgcatacgcgcacacacacgcacatgaaagcat
gctcagactttaaggcagatcccatcccgcatgagtctgactctgcaaac
acactgtctgctgagatatccaagtctcctcctcagggtctcgtctattt
tagtggcctcagcatattagctcctaccctctgtccactctgaggggaac
atagagagatagacagatccccaactcccacccactgaacctccctccaa
agggatggcacaggattgaagtcgtcctgaggagggggagctggcaaaag
caagcattaagaagagatggctgcttttgacactggtcctgaccagggat
gttcattttctggcacgtcagcctggccacctcagagtgcgggtaggaga
acaggaaggcagggtgctgccagctccaaaccctttgctcctccagctgt
cactctcagaagccttgaagtggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_6892107_6892526
seq2: B6Ng01-339B21.b_1_420

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAA  50
                                                     |||
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAA  50

seq1  TTCACACTGCTGTGCACAAACCCACACACAGACACAGACACCCAAGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACTGCTGTGCACAAACCCACACACAGACACAGACACCCAAGTGAA  100

seq1  AAAGAAAAGTCAAAAAATGTAACAACATGCTTGAAAAACAGCAGTTCGCT  150
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGTCAAAAAGTGTAACAACATGCTTGAAAAACAGCAGTTCGCT  150

seq1  TCTGGTCTGGGATAGCTCAGTTGGCCTAGAGGAATGAAGGGCTGGGTTTG  200
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTGGTCTGGGATAGCTCAGTTGGCCTAGAGGCATGAAGGGCTGGGTTTG  200

seq1  AGTGAGCCCCAGTGTTCATCTGTGATCCCAGTGCTGAGGTAAAGGCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTGAGCCCCAGTGTTCATCTGTGATCCCAGTGCTGAGGTAAAGGCAACA  250

seq1  TGGTCAGAATGATGGAGATCTGTGAGTTATCATCTGGCTGCTAACTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGAATGATGGAGATCTGTGAGTTATCATCTGGCTGCTAACTAAAA  300

seq1  GCAAGGGAGGAACTTGTAGACTGCTCACTCACCCCACTTAACCCTCATTC  350
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGTGGAACTTGTAGACTGCTCACTCACCCCACTTAACCCTCATTC  350

seq1  AAAGTAAATGAAGGACAGGCTACTTAGGCAGCAGGTAAGAGGCCACTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAATGAAGGACAGGCTACTTAGGCAGCAGGTAAGAGGCCACTGAA  400

seq1  CAAAGCATAGTCACAAACAA  420
      ||||| ||||||||||||||
seq2  CAAAGTATAGTCACAAACAA  420

seq1: chr5_129911392_129912416
seq2: B6Ng01-339B21.g_65_1088

seq1  GAATTCAGGCCTCCGGATGTAGGGATGCTGAGAGTTACATCGAAGCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCCTCCGGATGTAGGGATGCTGAGAGTTACATCGAAGCAGCT  50

seq1  TTGTACCGCATGGGGACAGCCCAAGGCACCGACAGAAAAACCCAGTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCGCATGGGGACAGCCCAAGGCACCGACAGAAAAACCCAGTCTGC  100

seq1  GAGATGGCCAGAAACACTCGCTGTACAGTTTCCTGTTATACTGGCCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCCAGAAACACTCGCTGTACAGTTTCCTGTTATACTGGCCAGTG  150

seq1  GATCTCGGCTTTTGAACAATCTGCTTTCGATTGTGATTCTGCCACTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCGGCTTTTGAACAATCTGCTTTCGATTGTGATTCTGCCACTTGAG  200

seq1  ACTGAATTAGGAGGAAATAAATCCATCTGATTCATGTGGCACGGTGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATTAGGAGGAAATAAATCCATCTGATTCATGTGGCACGGTGTGAG  250

seq1  GATTTTCAGGGGCTTTAAGCTGGAGCAGAGCTCAGTACTACAAATGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCAGGGGCTTTAAGCTGGAGCAGAGCTCAGTACTACAAATGAAGT  300

seq1  CTCAGAGCTTGCCACGCTGACTGCTGCCAGAGCTCCTTACCACTGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGCTTGCCACGCTGACTGCTGCCAGAGCTCCTTACCACTGAAAAG  350

seq1  AGATGGCTGTGTGTTTACAACCAGCCCAGGGGACCCTGAGCAAACCACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTGTGTGTTTACAACCAGCCCAGGGGACCCTGAGCAAACCACTA  400

seq1  TGTCCTGTAGGTCTCGTAGACCTAGGTGCAGAGTGGACCTCTAAATGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTAGGTCTCGTAGACCTAGGTGCAGAGTGGACCTCTAAATGCAT  450

seq1  GGTACACATCACTCCACAACTACACTAACCCAGGGAGTTACTGTGTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACATCACTCCACAACTACACTAACCCAGGGAGTTACTGTGTCCAC  500

seq1  AAGGAAACATAGCCTCTGGCGCGCGCGCACGCACACACATGCACACGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACATAGCCTCTGGCGCGCGCGCACGCACACACATGCACACGCAC  550

seq1  ACGCACACGCACGCACACGCATACGCGCACACACACGCACATGAAAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACACGCACGCACACGCATACGCGCACACACACGCACATGAAAGCAT  600

seq1  GCTCAGACTTTAAGGCAGATCCCATCCCGCATGAGTCTGACTCTGCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGACTTTAAGGCAGATCCCATCCCGCATGAGTCTGACTCTGCAAAC  650

seq1  ACACTGTCTGCTGAGATATCCAAGTCTCCTCCTCAGGGTCTCGTCTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCTGCTGAGATATCCAAGTCTCCTCCTCAGGGTCTCGTCTATTT  700

seq1  TAGTGGCCTCAGCATATTAGCTCCTACCCTCTGTCCACTCTGAGGGGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGCCTCAGCATATTAGCTCCTACCCTCTGTCCACTCTGAGGGGAAC  750

seq1  ATAGAGAGATAGACAGATCCCCAACTCCCACCCACTGAACCTCCCTCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGATAGACAGATCCCCAACTCCCACCCACTGAACCTCCCTCCAA  800

seq1  AGGGATGGCACAGGATTGAAGTCGTCCTGAGGAGGGGGAGCTGGCAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGCACAGGATTGAAGTCGTCCTGAGGAGGGGGAGCTGGCAAAAG  850

seq1  CAAGCATTAAGAAGAGATGGCTGCTTTTGACACTGGTCCTGACCAGGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTAAGAAGAGATGGCTGCTTTTGACACTGGTCCTGACCAGGGAT  900

seq1  GTTCATTTTCTGGCACGTCAGCCTGGCCA-CTCAGAGTGGCGGGTAGGAG  949
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  GTTCATTTTCTGGCACGTCAGCCTGGCCACCTCAGAGT-GCGGGTAGGAG  949

seq1  AACAGGAAGGCAGGGTTGCTGCCAGCTCCAAACCC-TTGCTCCTCCAAGC  998
      ||||||||||||||| ||||||||||||||||||| |||||||||| |||
seq2  AACAGGAAGGCAGGG-TGCTGCCAGCTCCAAACCCTTTGCTCCTCC-AGC  997

seq1  TGTCACTCTCAGAAGCCTTGAAGTGGC  1025
      |||||||||||||||||||||||||||
seq2  TGTCACTCTCAGAAGCCTTGAAGTGGC  1024