BAC Information

Click to search

BAC

Clone NameB6Ng01-339J14
Chromosome14 (Build37)
Map Location 3,931,157 - 4,066,321
singlet/doubletdoublet
Overlap geneLOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012
Upstream geneLOC100040452, LOC100040657, LOC100040671, LOC100040682, LOC100040697, LOC544990, D830030K20Rik, LOC236565, LOC100040740, LOC100040755, LOC100040767, LOC100040779, LOC100038846, EG666890, LOC100040544, LOC100040797, LOC100040555, LOC100040565, LOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935
Downstream geneLOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339J14.bB6Ng01-339J14.g
ACCGA123551GA123552
length1,1651,122
definitionB6Ng01-339J14.b B6Ng01-339J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,065,164 - 4,066,321)(3,931,157 - 3,932,277)
sequence
gaattctactgcttcattagatgtcatgtgcttttgagggggaacgttgg
ttaggactctgacatgcttaagagattttgttagcacccaaatctctagg
gactgtggatgtagtagatgtttcacaacagtaaatataccagctgtgtc
aattcatgtgacatacactccaatttcccagggttttcctgtctcacaga
ggcaaatatctttctcctataggtttaattgtacaaaacatggacaatat
tttctaacggtgtattccttgacagagggcattttttcatatatatatat
atatatatatatatacatgagtttcacaaaatctctggtttacaacccta
tcttttacaaagaaaactccctactcttttgaacatatggaatcatctac
agggcaaatataaatagttaacttgctgtcccttcttcaaaacattatcc
tgcacatgctcccattctcaaatacaaccagacaatttaagtgggcaaca
gagagtagtggtcatcctggactgtacattactgcattgtagcctcatag
caattacttctccaatatctgtcttccagaattgctaagttgagaaatga
gggtgttgcaggttgtaacgtcatactgaactcacagcaaatataatact
cagaaggtagggctgggagtgcaatgacctgaattgagatgaaacctcaa
ttttaatgtgtctataaggtcaggatgctgtccctttggcattatcatct
ctggcttttgtgttcttatgctggctttgctgaacctgtgccccctaacc
tcacagatttaagagtgaaaaatcatgtatatcttctttcagaaaacatc
tgaatttcactacccttcttgagcccacacaatatcaatatgcagagctc
aaaaatcagggggagataggtgatgggcttcaaagatgagggcttttttc
ttaccaattagggcgcatatttttttccaatgtgatttttccttttctct
ttcactaaggtggccttgtgtgtttgctggccctaaggttcctgtttcca
acaacatgggcttacctcctattagagctcaattttaccagaaaaagatt
gttgtagatcatgttcctgaacagcaagtagttccacctacactgcctta
gtccagcttgacctg
gaattcactgtctttatcttttctctccctccatcttcttcttgggactc
agaatggtctcccctgcccctgggccatcaagtatgcaaattcttttgtg
tttacctatctgcagggtctgctagaaatacttcaacccaaaattccaaa
atgactaagaagagatcaaaaataaatgaactagaagaactgaaattgga
tatgaggaagatcagcaatgacatggaggaaatgtgtggaatcctgaacc
tttacatgtatgaggatttgaactacaggtaggaattatgcccagtaccc
tgttgactgtattgtgccatctgttaacccaatttccttccatgaatgga
gtgcgtcatctcccatcattcaattaagtagccctgacaggtgtttaatt
gttggataaacaaggtgctgtgtgtttattatcatcttcttttgtacttg
accttggggtttttgcattctgattgttgctgtgaacagctagaatgtcc
tgctcacacttactgtctctcagtgtgtgaatgcaatgcctgcaggcttc
aaggctttactctgatattgttcattatattctgagagatggcacctgtc
tggatttatttggcattctaattgtgtctgtgtgtgtgaacatagttgcg
tgtgttttgttcaggactggggctctgggacctttgatggggtctgagga
tttgtgtgatgcacagtttgcaggtcctgttagtgttgagtccatagagg
tccaaagtgatcaccagggaaagtttgctcctggtgtttcccttgttgtc
acacaggaatctcctggaggaggagatgtgataaagcctttctcctgtaa
tactagttgtgttttctgggaattcacataacaacagaaaccaagaaatg
agaatccctgccttaaaaaataagaggaagtcattacagatatctacctg
gacccttgccctgtggcacagtgtagtgtaaaattgtcatagagtacttc
tattccttatatgccttgcccgggcagccttgaaggtcagctagcttcca
attggtctcttactctgctgtccctctgccagataggtaagttatagcac
cttaggaacctcagttgaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4065164_4066321
seq2: B6Ng01-339J14.b_47_1211 (reverse)

seq1  CAGGTC-AGCTGGACCTAAGACAGTGTA-GTTGAACTACTTGCTG-TCAC  47
      |||||| ||||||| ||||| ||||||| || ||||||||||||| ||| 
seq2  CAGGTCAAGCTGGA-CTAAGGCAGTGTAGGTGGAACTACTTGCTGTTCAG  49

seq1  G-ACATGATTCTACAACAATCCTTTTCTTGGTAAAATTGAGCCTCT-ATA  95
      | |||||| |||||||||||| ||||| ||||||||||||| |||| |||
seq2  GAACATGA-TCTACAACAATCTTTTTC-TGGTAAAATTGAG-CTCTAATA  96

seq1  G--AGTAAGCCCCATGTTGTTGGAACCAGGACCCTTTAGGCCAGCAAACA  143
      |   ||||| ||||||||||||||| ||||| ||||  ||||||||||||
seq2  GGAGGTAAG-CCCATGTTGTTGGAAACAGGAACCTTAGGGCCAGCAAACA  145

seq1  CACAAGCCACCCTTAGTGAAAGAGAAAAGGAAAAATCACATTGGAAAAAA  193
      |||||| |  ||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGCCACCTTAGTGAAAGAGAAAAGGAAAAATCACATTGGAAAAAA  195

seq1  ATATGCGCCCTAATT-GTAAG-AAAAAGCCCTCATCTTTGAAG-CCATCA  240
      ||||||||||||||| ||||| ||||||||||||||||||||| ||||||
seq2  ATATGCGCCCTAATTGGTAAGAAAAAAGCCCTCATCTTTGAAGCCCATCA  245

seq1  CCTATCTCCCCCTGATTTTTGAGCTCTGCATATTGATATTGTGT-GGCTC  289
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTATCTCCCCCTGATTTTTGAGCTCTGCATATTGATATTGTGTGGGCTC  295

seq1  AAGAA-GGTAGTGAAATTCAGATGTTTTCTGAAAGAAGATATACATGATT  338
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGTAGTGAAATTCAGATGTTTTCTGAAAGAAGATATACATGATT  345

seq1  TTTCACTCTTAAATCTGTGAGGTTAGGGGGCACAGGTTCAGCAAAGCCAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTCTTAAATCTGTGAGGTTAGGGGGCACAGGTTCAGCAAAGCCAG  395

seq1  CATAAGAACACAAAAGCCAGAGATGATAATGCCAAAGGGACAGCATCCTG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAACACAAAAGCCAGAGATGATAATGCCAAAGGGACAGCATCCTG  445

seq1  ACCTTATAGACACATTAAAATTGAGGTTTCATCTCAATTCAGGTCATTGC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATAGACACATTAAAATTGAGGTTTCATCTCAATTCAGGTCATTGC  495

seq1  ACTCCCAGCCCTACCTTCTGAGTATTATATTTGCTGTGAGTTCAGTATGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAGCCCTACCTTCTGAGTATTATATTTGCTGTGAGTTCAGTATGA  545

seq1  CGTTACAACCTGCAACACCCTCATTTCTCAACTTAGCAATTCTGGAAGAC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACAACCTGCAACACCCTCATTTCTCAACTTAGCAATTCTGGAAGAC  595

seq1  AGATATTGGAGAAGTAATTGCTATGAGGCTACAATGCAGTAATGTACAGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTGGAGAAGTAATTGCTATGAGGCTACAATGCAGTAATGTACAGT  645

seq1  CCAGGATGACCACTACTCTCTGTTGCCCACTTAAATTGTCTGGTTGTATT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGACCACTACTCTCTGTTGCCCACTTAAATTGTCTGGTTGTATT  695

seq1  TGAGAATGGGAGCATGTGCAGGATAATGTTTTGAAGAAGGGACAGCAAGT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGGGAGCATGTGCAGGATAATGTTTTGAAGAAGGGACAGCAAGT  745

seq1  TAACTATTTATATTTGCCCTGTAGATGATTCCATATGTTCAAAAGAGTAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATTTATATTTGCCCTGTAGATGATTCCATATGTTCAAAAGAGTAG  795

seq1  GGAGTTTTCTTTGTAAAAGATAGGGTTGTAAACCAGAGATTTTGTGAAAC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTTCTTTGTAAAAGATAGGGTTGTAAACCAGAGATTTTGTGAAAC  845

seq1  TCATGTATATATATATATATATATATATATATGAAAAAATGCCCTCTGTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTATATATATATATATATATATATATATGAAAAAATGCCCTCTGTC  895

seq1  AAGGAATACACCGTTAGAAAATATTGTCCATGTTTTGTACAATTAAACCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATACACCGTTAGAAAATATTGTCCATGTTTTGTACAATTAAACCT  945

seq1  ATAGGAGAAAGATATTTGCCTCTGTGAGACAGGAAAACCCTGGGAAATTG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGAAAGATATTTGCCTCTGTGAGACAGGAAAACCCTGGGAAATTG  995

seq1  GAGTGTATGTCACATGAATTGACACAGCTGGTATATTTACTGTTGTGAAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTATGTCACATGAATTGACACAGCTGGTATATTTACTGTTGTGAAA  1045

seq1  CATCTACTACATCCACAGTCCCTAGAGATTTGGGTGCTAACAAAATCTCT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACTACATCCACAGTCCCTAGAGATTTGGGTGCTAACAAAATCTCT  1095

seq1  TAAGCATGTCAGAGTCCTAACCAACGTTCCCCCTCAAAAGCACATGACAT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATGTCAGAGTCCTAACCAACGTTCCCCCTCAAAAGCACATGACAT  1145

seq1  CTAATGAAGCAGTAGAATTC  1158
      ||||||||||||||||||||
seq2  CTAATGAAGCAGTAGAATTC  1165

seq1: chr14_3931157_3932277
seq2: B6Ng01-339J14.g_66_1187

seq1  GAATTCACTGTCTTTATCTTTTCTCTCCCTCCATCTTCTTCTTGGGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCTTTATCTTTTCTCTCCCTCCATCTTCTTCTTGGGACTC  50

seq1  AGAATGGTCTCCCCTGCCCCTGGGCCATCAAGTATGCAAATTCTTTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTCTCCCCTGCCCCTGGGCCATCAAGTATGCAAATTCTTTTGTG  100

seq1  TTTACCTATCTGCAGGGTCTGCTAGAAATACTTCAACCCAAAATTCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTATCTGCAGGGTCTGCTAGAAATACTTCAACCCAAAATTCCAAA  150

seq1  ATGACTAAGAAGAGATCAAAAATAAATGAACTAGAAGAACTGAAATTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAAGAAGAGATCAAAAATAAATGAACTAGAAGAACTGAAATTGGA  200

seq1  TATGAGGAAGATCAGCAATGACATGGAGGAAATGTGTGGAATCCTGAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGAAGATCAGCAATGACATGGAGGAAATGTGTGGAATCCTGAACC  250

seq1  TTTACATGTATGAGGATTTGAACTACAGGTAGGAATTATGCCCAGTACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGTATGAGGATTTGAACTACAGGTAGGAATTATGCCCAGTACCC  300

seq1  TGTTGACTGTATTGTGCCATCTGTTAACCCAATTTCCTTCCATGAATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTGTATTGTGCCATCTGTTAACCCAATTTCCTTCCATGAATGGA  350

seq1  GTGCGTCATCTCCCATCATTCAATTAAGTAGCCCTGACAGGTGTTTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTCATCTCCCATCATTCAATTAAGTAGCCCTGACAGGTGTTTAATT  400

seq1  GTTGGATAAACAAGGTGCTGTGTGTTTATTATCATCTTCTTTTGTACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATAAACAAGGTGCTGTGTGTTTATTATCATCTTCTTTTGTACTTG  450

seq1  ACCTTGGGGTTTTTGCATTCTGATTGTTGCTGTGAACAGCTAGAATGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGGGTTTTTGCATTCTGATTGTTGCTGTGAACAGCTAGAATGTCC  500

seq1  TGCTCACACTTACTGTCTCTCAGTGTGTGAATGCAATGCCTGCAGGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACACTTACTGTCTCTCAGTGTGTGAATGCAATGCCTGCAGGCTTC  550

seq1  AAGGCTTTACTCTGATATTGTTCATTATATTCTGAGAGATGGCACCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTACTCTGATATTGTTCATTATATTCTGAGAGATGGCACCTGTC  600

seq1  TGGATTTATTTGGCATTCTAATTGTGTCTGTGTGTGTGAACATAGTTGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTATTTGGCATTCTAATTGTGTCTGTGTGTGTGAACATAGTTGCG  650

seq1  TGTGTTTTGTTCAGGACTGGGGCTCTGGGACCTTTGATGGGGTCTGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTGTTCAGGACTGGGGCTCTGGGACCTTTGATGGGGTCTGAGGA  700

seq1  TTTGTGTGATGCACAGTTTGCAGGTCCTGTTAGTGTTGAGTCCATAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGATGCACAGTTTGCAGGTCCTGTTAGTGTTGAGTCCATAGAGG  750

seq1  TCCAAAGTGATCACCAGGG-AAGTTTGCTCCTGGTGTTT-CCTTGTTGTC  798
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  TCCAAAGTGATCACCAGGGAAAGTTTGCTCCTGGTGTTTCCCTTGTTGTC  800

seq1  ACACAGGAATCTCCTGGAGGAGGAGATGTGATAAAGCCTTTCTCCTGTAA  848
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACACAGGAATCTCCTGGAGGAGGAGATGTGATAAAGCCTTTCTCCTGT-A  849

seq1  ATACTAGTTGTGTTTTCTGGGAATTCACATAACAACAGAAACCAAGAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGTTGTGTTTTCTGGGAATTCACATAACAACAGAAACCAAGAAAT  899

seq1  GAGAATCCCTGCCTT-AAAAATAAGAGGAAAGTCATTACAGATATCTA-C  946
      ||||||||||||||| |||||||||||| ||||||||||||||||||| |
seq2  GAGAATCCCTGCCTTAAAAAATAAGAGG-AAGTCATTACAGATATCTACC  948

seq1  TGGACCCTTG-CCTGTGGCACAGTGTAGTGTAAAATTGTCATAGAAGTAC  995
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  TGGACCCTTGCCCTGTGGCACAGTGTAGTGTAAAATTGTCATAG-AGTAC  997

seq1  -TCTATTCC-TATATG-CTTGCCCGGGAAGCCCTTGAAGGTCAGCTAGC-  1041
       |||||||| |||||| |||||||||| || |||||||||||||||||| 
seq2  TTCTATTCCTTATATGCCTTGCCCGGGCAG-CCTTGAAGGTCAGCTAGCT  1046

seq1  TCCATTTGGTCTCCTGGCTCTGCTGT-CCTCTGCCCAGGATA-GTAAGTT  1089
      |||| ||||||| ||  ||||||||| ||||||||   |||| |||||||
seq2  TCCAATTGGTCT-CTTACTCTGCTGTCCCTCTGCC--AGATAGGTAAGTT  1093

seq1  TAATTAGCACCTAGGGGACC-CAGTTTGAATGA  1121
          ||||||||  || ||| ||| ||||||||
seq2  ---ATAGCACCTTAGGAACCTCAG-TTGAATGA  1122