BAC Information

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BAC

Clone NameB6Ng01-339L04
Chromosome14 (Build37)
Map Location 113,683,671 - 113,684,708
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509
Downstream geneTpm3-rs7, LOC100043510, LOC382947, LOC668791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339L04.bB6Ng01-339L04.g
ACCGA123620GA123621
length1,1661,031
definitionB6Ng01-339L04.b B6Ng01-339L04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtatttatagctgagtaaattgtgtaaatacaccacatttt
ctgtatccatttctctgttgaaggacatctgggctctttccagcttctgg
atattataaatgaggctgctatgaacatagtgtagcatgtgtccttgtta
tatgttggggcatcttttgagtatatgcccaggagtgatataactggatc
ctcaggtaatactatgtccagttttctgaggagctgcctaatttatttcc
agagtggttttaccagcttaaaatccgaccaagactgaaggagtatttct
cttttccacatcctcaccaacatctgctgtcatctgagttatgatcttag
gcattctgacggtttaattttggttttgtaatggaaaatcttggtttctc
catctatgataattgtgaggtttgctgggtaacatctgtttcccttaggg
tctgtatggcatatgccaaaggtcttcagtcatttaaaatctctgttgag
aagtctaatgtaattctgaaaagtcttactttatatgttccttgaccttt
ttacatttctgttcttaatattcttcctttattctatatatttggtgttt
tgattattatgttataggatgaaattattttttggtccaatctatttggt
gttctataagattcttgtacatttattggcatttctttctttagtttagg
gaagttttcttctatgattttattgaagatatttacaggccctttaaatt
gggaatcttcactcccttctatacctagtatgtttaggtttgtttttctc
attgtgtcctgaatttcctgaatgttttgggcaatgagcttcttgtgctt
tgttttttgttttttgtttttttgtttttgtttttttttttttttttaac
tgatgctgcactatccttctaagggtatcttctaagtctgggattcttct
ctcctatttctggtattctgttgcctgataccttgccaaactttgactcc
ctgggtcctctttcctggggattccataccaggattgtctcctttgtgat
tcttaatgtactattacaattatagatctgggactgttgtcatttcctca
ccggtatggatttgggcattcctcagtcctaaaggtacttaagtgtgttc
cccctgagagggcatc

gaattcactggtatcaacatgaagtccatgactaataatttgttaaggct
ttgagtgaccttccttgctgctcatcatgatacacaacttagaactacac
agtaaaagtctgtaatggagagatatatttcatatatcaccttttagtgt
aatgtcttgaaaagggatttcactccaatttttgcatttgcacacacact
atatgtataaaaatatatacatatacattatatatgtatataacactata
cacattatataaatatattatacatattataaatgtatatttgggtattt
ttttgctacacacattttttaaattaatgaatgaataaattaatttcacc
ctccatattttgtctaccctcctactgctccacttcccatacctcctctc
caccccctgtctccacatagatgtccctacctcccatgccacatgacctc
taaactccctggggcctccagattcttgagtgctaggtgtttcatctttg
aatgaacacagacctagcagtcctctgctgtatgtgcacacattgattga
gtgaaggtaacttccttctcactgctagcggaaaatgtaaaaagaaagtt
ttgggaagcctactggtgctttatagattgagacaaaataaaattcttaa
aattgatgacatattaaagataatatggcaagtttgtttcatttaattat
ttttatcatggattcattttgttttattttactccatttagtaggagatg
aaacttagtactctctatatacttaacaatgaccacaacaacgatagtaa
tatggaaggaatgtagaaatattaataaaaagtgaaaatgagctataaaa
catcaagaaacaccattctaacacatgtttaagaaatcagtttattcaga
gcttatagacttctaagaattagtttcctcagctaatatgggtataaaaa
aacattatcagtgagattctttgtcagtctgagccccatttttttatggg
gttgttgattttctgaagtccacttctgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_113683671_113684708
seq2: B6Ng01-339L04.g_68_1098

seq1  GAATTCACTGGTATCAACATGAAGTCCATGACTAATAATTTGTTAAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGTATCAACATGAAGTCCATGACTAATAATTTGTTAAGGCT  50

seq1  TTGAGTGACCTTCCTTGCTGCTCATCATGATACACAACTTAGAACTACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGACCTTCCTTGCTGCTCATCATGATACACAACTTAGAACTACAC  100

seq1  AGTAAAAGTCTGTAATGGAGAGATATATTTCATATATCACCTTTTAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGTCTGTAATGGAGAGATATATTTCATATATCACCTTTTAGTGT  150

seq1  AATGTCTTGAAAAGGGATTTCACTCCAATTTTTGCATTTGCACACACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTGAAAAGGGATTTCACTCCAATTTTTGCATTTGCACACACACT  200

seq1  ATATGTATAAAAATATATACATATACATTATATATGTATATAACACTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATAAAAATATATACATATACATTATATATGTATATAACACTATA  250

seq1  CACATTATATAAATATATTATACATATTATAAATGTATATTTGGGTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTATATAAATATATTATACATATTATAAATGTATATTTGGGTATTT  300

seq1  TTTTGCTACACACATTTTTTAAATTAATGAATGAATAAATTAATTTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTACACACATTTTTTAAATTAATGAATGAATAAATTAATTTCACC  350

seq1  CTCCATATTTTGTCTACCCTCCTACTGCTCCACTTCCCATACCTCCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATATTTTGTCTACCCTCCTACTGCTCCACTTCCCATACCTCCTCTC  400

seq1  CACCCCCTGTCTCCACATAGATGTCCCTACCTCCCATGCCACATGACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCTGTCTCCACATAGATGTCCCTACCTCCCATGCCACATGACCTC  450

seq1  TAAACTCCCTGGGGCCTCCAGATTCTTGAGTGCTAGGTGTTTCATCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCCCTGGGGCCTCCAGATTCTTGAGTGCTAGGTGTTTCATCTTTG  500

seq1  AATGAACACAGACCTAGCAGTCCTCTGCTGTATGTGCACACATTGATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACACAGACCTAGCAGTCCTCTGCTGTATGTGCACACATTGATTGA  550

seq1  GTGAAGGTAACTTCCTTCTCACTGCTAGCGGAAAATGTAAAAAGAAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGTAACTTCCTTCTCACTGCTAGCGGAAAATGTAAAAAGAAAGTT  600

seq1  TTGGGAAGCCTACTGGTGCTTTATAGATTGAGACAAAATAAAATTCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGCCTACTGGTGCTTTATAGATTGAGACAAAATAAAATTCTTAA  650

seq1  AATTGATGACATATTAAAGATAATATGGCAAGTTTGTTTCATTTAATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGACATATTAAAGATAATATGGCAAGTTTGTTTCATTTAATTAT  700

seq1  TTTTATCATGGATTCATTTTGTTTTATTTTACTCCATTTAGTAGGAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCATGGATTCATTTTGTTTTATTTTACTCCATTTAGTAGGAGATG  750

seq1  AAACTTAGTACTCTCTATATACTTAACAATGACCACAACAACGATAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGTACTCTCTATATACTTAACAATGACCACAACAACGATAGTAA  800

seq1  TATGGAAGGAATGTAGAAATATTAATAAAAAGTGAAAATGAGCTATAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGGAATGTAGAAATATTAATAAAAAGTGAAAATGAGCTATAAAA  850

seq1  CATCAAGAAACACCATTCTAACACATGTTTAAGAAATCAGTTTATTCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGAAACACCATTCTAACACATGTTTAAGAAATCAGTTTATTCAGA  900

seq1  GCTTATAGACTTCTAAGAATTAGGTTTCCTCAGCTAATATGGGTAT-AAA  949
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  GCTTATAGACTTCTAAGAATTA-GTTTCCTCAGCTAATATGGGTATAAAA  949

seq1  AAACATTATCAGGTGAGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTA  999
      ||||||||||| ||||| |||||||| |||| ||||||||||||||||| 
seq2  AAACATTATCA-GTGAG-ATTCTTTG-TCAG-TCTGAGCCCCATTTTTTT  995

seq1  ATGGGGTTGTTTGATTTTCTGAAGTCCACCTTCTTGAGT  1038
      ||||||||| |||||||||||||||||| |||| |||||
seq2  ATGGGGTTG-TTGATTTTCTGAAGTCCA-CTTC-TGAGT  1031


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