BAC Information

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BAC

Clone NameB6Ng01-340J04
Chromosome14 (Build37)
Map Location 12,875,912 - 12,946,446
singlet/doubletdoublet
Overlap genePtprg
Upstream geneFhit, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, LOC100042441
Downstream gene3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340J04.bB6Ng01-340J04.g
ACCGA124231GA124232
length1,139976
definitionB6Ng01-340J04.b B6Ng01-340J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,945,309 - 12,946,446)(12,875,912 - 12,876,889)
sequence
gaattcctaaccactcagcttttccaaattggcccttgtgcccctgaaat
cagtgctctctgctagcttcagaaagaacactggaatctgaagttttgaa
gcattaatacatagatggacacttttctcctggggtgtggtgtctgtgtg
tggcggggtgtgtgtgtgatgcaactgcggcctctgtacgatggctagca
aggagccagtgaagccacagaaacaggaacctgtcccttccctgggaata
aacagcaatgtagggtgcagggtctgataaaagtgcagccctctgcaggc
agcttgtaatgaattagaaagcaagtcggggttctttttctctgtttggt
cccttccagggaaggcaaacacctgcattcttctccttgtgtccttgctc
tagagcgctgacaagcacaaaggcatgacaaagcactttctaaaagctcc
agtttccaaatgtcaaaatgcttggaatccacaaacacttctgcagacat
ccactcctcgaaagtgtgtgttttattggagtctattagatagctgtagc
tgccaaaacaacacagtatgttgatggccttcaaatccctgagctcgcca
acgtccacccctcactacaagaagaagaagaaaaaaaaaagtgggcaaat
cttaatttcaatagctcaagcatttaaatatttgaagacagaagcattta
tcttaagtaaaaaaaaagaacccttttgaaaatcaactacactttttcct
caaccctacagaaataaatatttggactaattttctttaaaaacaaaaca
atgttggctttcgccattaggaagaaaattcgtctctatttcatttctcc
tcacagctggcagatcctgttcaggaaccaaattgctagccctacctttt
ctgtcagagtgtgaattaaaaagaaaaacatgctcaaaggaaaatgacct
gctctcagcagaaaaattcagaaatagcctggcaccatgccacctagctt
tgcccagaggataaagggctgccctgcctgtctccttctacagttcctgc
tccatgtacccgagaatgtcaacactggatgtcctttgggcactactcac
atctcctctgatttgtttaaaggattgccatgtgacaca
gaattcagaatcctaaaggaatatttattaccaaggctgaatgagatcta
tgtatctgtgcctgagaattgttttgcaatgcttcctaccaaagtgcttt
tatgtttgtcaacaatagatgaagaatatgtgagtcccgttgctgatggg
cgatctcttgggcttgtcttgctgtctcttcattatctgctcctgaaggt
cttgctgtgatccttgatggctggcttctgtttccatgcatctggaattt
ccttggttttccctgcagttatttgtgtctgtttttctccttcagattcg
cttcaggttttttctccctttttcattcattcacttgctgtcttgttcac
tccacagtgtttatcagacaatttccctgtgccaggctccatgaaaatgt
cgaagggaacctaacattgtgtcctcctctcagtggaatcaggagcaata
atatcacaggtgaccatatgtcattctgtccttagaatgaaggaaagata
aaacaggtcaggtagattatactatcaagagaaaaatacattattttgtg
taatttcacagtgatgaatatttcatttcaaaagcatgcagtttccagtt
gtggattttgggattggccccctgtttttcttttgttccactctttttta
aaccaccagtaccaaagcataaatcaggcttttgttcatggtgacctaaa
taggtatttttgaaaaatatattcccaaggaattttctctgcctttttta
ttgacaataaattatttatcacagttgtagatagctctgatttcatcctc
accagttctgcaaagtaggaggcaagggtatgaatcagtaattgtattca
actgccaaaattttccccaccattatttgtctgtctgtctggtgtgtata
tttggtgtgtgtgcatgtgtatgtatgtgtgtatatgtatgactcatgct
gtgcacaagtttatgatgggtattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12945309_12946446
seq2: B6Ng01-340J04.b_42_1180 (reverse)

seq1  TGTGTCACATGCCCATCC-TTAAACAAATCAGAGGAGATGCTGAGTAGTG  49
      ||||||||||| | |||| ||||||||||||||||||||| |||||||||
seq2  TGTGTCACATGGCAATCCTTTAAACAAATCAGAGGAGATG-TGAGTAGTG  49

seq1  CCCAAA-GACATCCAGTGTTGACCTTTCTCGGGTTACATGGAGCAGGAAC  98
      |||||| ||||||||||||||| | |||||||| ||||||||||||||||
seq2  CCCAAAGGACATCCAGTGTTGA-CATTCTCGGG-TACATGGAGCAGGAAC  97

seq1  TGTAGAAGGAGACCAGGCAGGGCAGCCCTTTATCCTCTGGGCAAAGCTAG  148
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGGAGA-CAGGCAGGGCAGCCCTTTATCCTCTGGGCAAAGCTAG  146

seq1  GTGGCATGGTGCCAGGCTA-TTCTGAATTTTTCTGCTGAGAGCA-GTCAT  196
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  GTGGCATGGTGCCAGGCTATTTCTGAATTTTTCTGCTGAGAGCAGGTCAT  196

seq1  TTTCCTTTGAGCATGTTTTTCTTTTTAATTCACACTCTGACAGAAAAGGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGAGCATGTTTTTCTTTTTAATTCACACTCTGACAGAAAAGGT  246

seq1  AGGGCTAGCAATTTGGTTCCTGAACAGGATCTGCCAGCTGTGAGGAGAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGGCTAGCAATTTGGTTCCTGAACAGGATCTGCCAGCTGTGAGGAG-AA  295

seq1  ATGAAATAGAGACGAATTTTCTTCCTAATGGCG-AAGCCAACATTGTTTT  345
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGAAATAGAGACGAATTTTCTTCCTAATGGCGAAAGCCAACATTGTTTT  345

seq1  GTTTTTAAAG-AAATTAGTCCAAATATTTATTTCTGTAGGGTTGAGGAAA  394
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAAAGAAAATTAGTCCAAATATTTATTTCTGTAGGGTTGAGGAAA  395

seq1  AAGTGTAGTTGATTTTCAAAAGGGTTCTTTTTTTTTACTTAAGATAAATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGTTGATTTTCAAAAGGGTTCTTTTTTTTTACTTAAGATAAATG  445

seq1  CTTCTGTCTTCAAATATTTAAATGCTTGAGCTATTGAAATTAAGATTTGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCTTCAAATATTTAAATGCTTGAGCTATTGAAATTAAGATTTGC  495

seq1  CCACTTTTTTTTTTCTTCTTCTTCTTGTAGTGAGGGGTGGACGTTGGCGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTTTTTTTTCTTCTTCTTCTTGTAGTGAGGGGTGGACGTTGGCGA  545

seq1  GCTCAGGGATTTGAAGGCCATCAACATACTGTGTTGTTTTGGCAGCTACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGGATTTGAAGGCCATCAACATACTGTGTTGTTTTGGCAGCTACA  595

seq1  GCTATCTAATAGACTCCAATAAAACACACACTTTCGAGGAGTGGATGTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTAATAGACTCCAATAAAACACACACTTTCGAGGAGTGGATGTCT  645

seq1  GCAGAAGTGTTTGTGGATTCCAAGCATTTTGACATTTGGAAACTGGAGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGTGTTTGTGGATTCCAAGCATTTTGACATTTGGAAACTGGAGCT  695

seq1  TTTAGAAAGTGCTTTGTCATGCCTTTGTGCTTGTCAGCGCTCTAGAGCAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAGTGCTTTGTCATGCCTTTGTGCTTGTCAGCGCTCTAGAGCAA  745

seq1  GGACACAAGGAGAAGAATGCAGGTGTTTGCCTTCCCTGGAAGGGACCAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAAGGAGAAGAATGCAGGTGTTTGCCTTCCCTGGAAGGGACCAAA  795

seq1  CAGAGAAAAAGAACCCCGACTTGCTTTCTAATTCATTACAAGCTGCCTGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAAAGAACCCCGACTTGCTTTCTAATTCATTACAAGCTGCCTGC  845

seq1  AGAGGGCTGCACTTTTATCAGACCCTGCACCCTACATTGCTGTTTATTCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTGCACTTTTATCAGACCCTGCACCCTACATTGCTGTTTATTCC  895

seq1  CAGGGAAGGGACAGGTTCCTGTTTCTGTGGCTTCACTGGCTCCTTGCTAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGGGACAGGTTCCTGTTTCTGTGGCTTCACTGGCTCCTTGCTAG  945

seq1  CCATCGTACAGAGGCCGCAGTTGCATCACACACACACCCCGCCACACACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGTACAGAGGCCGCAGTTGCATCACACACACACCCCGCCACACACA  995

seq1  GACACCACACCCCAGGAGAAAAGTGTCCATCTATGTATTAATGCTTCAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCACACCCCAGGAGAAAAGTGTCCATCTATGTATTAATGCTTCAAA  1045

seq1  ACTTCAGATTCCAGTGTTCTTTCTGAAGCTAGCAGAGAGCACTGATTTCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGATTCCAGTGTTCTTTCTGAAGCTAGCAGAGAGCACTGATTTCA  1095

seq1  GGGGCACAAGGGCCAATTTGGAAAAGCTGAGTGGTTAGGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACAAGGGCCAATTTGGAAAAGCTGAGTGGTTAGGAATTC  1139

seq1: chr14_12875912_12876889
seq2: B6Ng01-340J04.g_65_1040

seq1  GAATTCAGAATCCTAAAGGAATATTTATTACCAAGGCTGAATGAGATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATCCTAAAGGAATATTTATTACCAAGGCTGAATGAGATCTA  50

seq1  TGTATCTGTGCCTGAGAATTGTTTTGCAATGCTTCCTACCAAAGTGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGTGCCTGAGAATTGTTTTGCAATGCTTCCTACCAAAGTGCTTT  100

seq1  TATGTTTGTCAACAATAGATGAAGAATATGTGAGTCCCGTTGCTGATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTGTCAACAATAGATGAAGAATATGTGAGTCCCGTTGCTGATGGG  150

seq1  CGATCTCTTGGGCTTGTCTTGCTGTCTCTTCATTATCTGCTCCTGAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTCTTGGGCTTGTCTTGCTGTCTCTTCATTATCTGCTCCTGAAGGT  200

seq1  CTTGCTGTGATCCTTGATGGCTGGCTTCTGTTTCCATGCATCTGGAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTGATCCTTGATGGCTGGCTTCTGTTTCCATGCATCTGGAATTT  250

seq1  CCTTGGTTTTCCCTGCAGTTATTTGTGTCTGTTTTTCTCCTTCAGATTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTTTTCCCTGCAGTTATTTGTGTCTGTTTTTCTCCTTCAGATTCG  300

seq1  CTTCAGGTTTTTTCTCCCTTTTTCATTCATTCACTTGCTGTCTTGTTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGTTTTTTCTCCCTTTTTCATTCATTCACTTGCTGTCTTGTTCAC  350

seq1  TCCACAGTGTTTATCAGACAATTTCCCTGTGCCAGGCTCCATGAAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGTGTTTATCAGACAATTTCCCTGTGCCAGGCTCCATGAAAATGT  400

seq1  CGAAGGGAACCTAACATTGTGTCCTCCTCTCAGTGGAATCAGGAGCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGGAACCTAACATTGTGTCCTCCTCTCAGTGGAATCAGGAGCAATA  450

seq1  ATATCACAGGTGACCATATGTCATTCTGTCCTTAGAATGAAGGAAAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACAGGTGACCATATGTCATTCTGTCCTTAGAATGAAGGAAAGATA  500

seq1  AAACAGGTCAGGTAGATTATACTATCAAGAGAAAAATACATTATTTTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTCAGGTAGATTATACTATCAAGAGAAAAATACATTATTTTGTG  550

seq1  TAATTTCACAGTGATGAATATTTCATTTCAAAAGCATGCAGTTTCCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCACAGTGATGAATATTTCATTTCAAAAGCATGCAGTTTCCAGTT  600

seq1  GTGGATTTTGGGATTGGCCCCCTGTTTTTCTTTTGTTCCACTCTTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTTGGGATTGGCCCCCTGTTTTTCTTTTGTTCCACTCTTTTTTA  650

seq1  AACCACCAGTACCAAAGCATAAATCAGGCTTTTGTTCATGGTGACCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCAGTACCAAAGCATAAATCAGGCTTTTGTTCATGGTGACCTAAA  700

seq1  TAGGTATTTTTGAAAAATATATTCCCAAGGAATTTTCTCTGCCTTTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTTTGAAAAATATATTCCCAAGGAATTTTCTCTGCCTTTTTTA  750

seq1  TTGACAATAAATTATTTATCACAGTTGTAGATAGCTCTGATTTCATCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAATAAATTATTTATCACAGTTGTAGATAGCTCTGATTTCATCCTC  800

seq1  ACCAGTTCTGCAAAGTAGGAGGCAAGGGTATGAATCAGTAATTGTATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTCTGCAAAGTAGGAGGCAAGGGTATGAATCAGTAATTGTATTCA  850

seq1  ACTGCCAAAATTTTCCCCACCATTATTTGTCTGTCTGTCTGGTGTGTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAAAATTTTCCCCACCATTATTTGTCTGTCTGTCTGGTGTGTATA  900

seq1  TTTGGTGTGTGTGCATGTGTATGTATGTGTGTATATGTATGTACACATGC  950
      ||||||||||||||||||||||||||||||||||||||||| || |||| 
seq2  TTTGGTGTGTGTGCATGTGTATGTATGTGTGTATATGTATG-ACTCATG-  948

seq1  CTGTGCACAAGTCTATGATGGGTATTGA  978
      |||||||||||| |||||||||||||||
seq2  CTGTGCACAAGTTTATGATGGGTATTGA  976