BAC Information

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BAC

Clone NameB6Ng01-341E17
Chromosome14 (Build37)
Map Location 12,171,251 - 12,324,049
singlet/doubletdoublet
Overlap geneLOC667059
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427
Downstream geneLOC100041996, Ptprg, LOC100042441, 3830406C13Rik, EG667072, Fezf2, Cadps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341E17.bB6Ng01-341E17.g
ACCGA124716GA124717
length1,0921,149
definitionB6Ng01-341E17.b B6Ng01-341E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,322,951 - 12,324,049)(12,171,251 - 12,172,403)
sequence
gaattcctactttgtggccacatggtgtcagatgaatatgaacagctttc
tcctgaagcactggaggctgcccaaatttgtgccaacaaatacatggtaa
agagttgtggcaaggatggctttccgatccgactgaggctctaccctttc
catatcatccaaaacaacaaaatgtcctgagctggggttaacaggttttc
gtggtgtctttgtgaagccccagggcacagtgtccagggttcacattggc
tagctaactcatcatgcccatccgcaccggggtgcagagtaaggaatatg
tgattgaagttctgcagagagcacaagttcaagttcccgggcctatggaa
gatccacatttcaaagaagtggggctccatgaaatttaaggcagatgagt
ttgaagacagttgctgagaagcagatcattcctgatggctttggggtcaa
atacacgcccagtccccaaataacatctcctggacaagtggagagccgcg
tattcccgagggcttccacactgctctcctataccatatcaaatcatgtt
cagcaataaatctcacatccagctgcttaaaaaataataaataaaccttt
aaaaaagataatacaaaaagagaaaaccagaaagtagcatattttgtaaa
tttagataaaaaaaaaatactcagtaaaccattaacaaaccaaattcagc
aatgcacaaaaaattattcaccattccagtgagatttattacaggtatgc
aagacttagttaatatctaaaaatcaattcggttagccttcctctcaaca
aaccaggaaagaaaaatcttaacatatatttataatatatgtatgtgtgc
tataaaaacataatttaatatacatgacaaatagattttatatggaagtc
acaagcgagaaaatagttaaaattctagttacataatttctaccaaacat
gaaatacttaaaatttaccactatttatattaaaaatatttctgagattt
taagatgaccaatagagagacatactctgtttgttaacatttttaaaatt
atgtcagatgaggcattgattccctggaacaggaatctgtga
gaattctttgtggagttttcacaaacacatcaatgcaatcttataataat
aggaggcagttagatttgaaatgactcacactgctttcatctggggactg
atttcttacccaagtagtattcagagacaaatatatagagcccacatttt
catttcatttctagtttcatgcttttggttgtatttataaaaagctgcat
gttgttcaaaaatgaaaactattcaaatatgtattattacattatttcta
caatcttcagtgtacaaatggtctgctgtctgatatctgagaaattacaa
gctaagataaaaaactaatgttgcctcagaagaaagactaataagataca
ttggaactgggaagtctagaattgtgaaagccttcatttcagagaggaaa
aaagggagtagataccaacaaattattccacaagtgtggaaacaagtgtt
gtcatatctcaccaagctgtggactaaagatgtgtcttccagccatgtcc
ctttactagtgctgtttagatttgttcaaacattaaatgccctcagagag
tgtgctatgtgcttatcttaaactcaccctggaagataaatgcaaaactt
aaattcatactaaaatataagtaaagggaagttgtgagagaaccaaactc
actccatttcagaacaggcagccatgttaggccttaagcttcaattttcc
aaaaggacagcccaggcttctcagaaaacccacagaaaaataggcaatca
gcaactgccccaacatccagccaggggcttaaaacacgtaaggaaaaagt
ccctataaggtaaccctctctcccttgaagtatgaaccaataagaagtgt
acaaatatcccataccataaactcaaccaaccctgatggaagtgatcaga
tgcaactggaaaacccctaactggattttaaagtgggtctgtgagcttcc
catgtggtagtcgccattttagatggtgtcccctgcgtgctgctgtttct
tgcagaattagcactctttgctttgcatacttgggatctctttcattgac
tctcagatctttaagtgtatggtcttgaagagggtaaatagggattttat
gcctctcccaggtatgtggtgtgataaacattgaacattgtgtgaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12322951_12324049
seq2: B6Ng01-341E17.b_47_1138 (reverse)

seq1  TCACAGATTCCTGTTCCAGGGAATCAATGCCCTCATCTGACATAAATTTT  50
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  TCACAGATTCCTGTTCCAGGGAATCAATG-CCTCATCTGACAT-AATTTT  48

seq1  AAAAATGTTAACAAACAGAGTATGTCTCTCTATTTGGTCATCTTTAAAAA  100
      |||||||||||||||||||||||||||||||| |||||||||||  ||||
seq2  AAAAATGTTAACAAACAGAGTATGTCTCTCTA-TTGGTCATCTT--AAAA  95

seq1  TCTCAGAAATATTTTTAATATAAATAGTTGGTAAATTTTTAAGTATTTCA  150
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  TCTCAGAAATATTTTTAATATAAATAG-TGGTAAA-TTTTAAGTATTTCA  143

seq1  TGTTTGGTAGAAATTATGTAACTAGAATTTTAACTATTTTCTCGCTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTAGAAATTATGTAACTAGAATTTTAACTATTTTCTCGCTTGTG  193

seq1  ACTTCCATATAAAATCTATTTGTCATGTATATTAAATTATGTTTTTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATATAAAATCTATTTGTCATGTATATTAAATTATGTTTTTATAG  243

seq1  CACACATACATATATTATAAATATATGTTAAGATTTTTCTTTCCTGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACATATATTATAAATATATGTTAAGATTTTTCTTTCCTGGTTT  293

seq1  GTTGAGAGGAAGGCTAACCGAATTGATTTTTAGATATTAACTAAGTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAGGAAGGCTAACCGAATTGATTTTTAGATATTAACTAAGTCTTG  343

seq1  CATACCTGTAATAAATCTCACTGGAATGGTGAATAATTTTTTGTGCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTGTAATAAATCTCACTGGAATGGTGAATAATTTTTTGTGCATTG  393

seq1  CTGAATTTGGTTTGTTAATGGTTTACTGAGTATTTTTTTTTTATCTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTGGTTTGTTAATGGTTTACTGAGTATTTTTTTTTTATCTAAAT  443

seq1  TTACAAAATATGCTACTTTCTGGTTTTCTCTTTTTGTATTATCTTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAATATGCTACTTTCTGGTTTTCTCTTTTTGTATTATCTTTTTTA  493

seq1  AAGGTTTATTTATTATTTTTTAAGCAGCTGGATGTGAGATTTATTGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTATTTATTATTTTTTAAGCAGCTGGATGTGAGATTTATTGCTGA  543

seq1  ACATGATTTGATATGGTATAGGAGAGCAGTGTGGAAGCCCTCGGGAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTTGATATGGTATAGGAGAGCAGTGTGGAAGCCCTCGGGAATAC  593

seq1  GCGGCTCTCCACTTGTCCAGGAGATGTTATTTGGGGACTGGGCGTGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTCTCCACTTGTCCAGGAGATGTTATTTGGGGACTGGGCGTGTATT  643

seq1  TGACCCCAAAGCCATCAGGAATGATCTGCTTCTCAGCAACTGTCTTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCAAAGCCATCAGGAATGATCTGCTTCTCAGCAACTGTCTTCAAA  693

seq1  CTCATCTGCTTTAAATTTCATGGAGCCCCACTTCTTTGAAATGTGGATCT  750
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGCCTTAAATTTCATGGAGCCCCACTTCTTTGAAATGTGGATCT  743

seq1  TCCATAGGCCCGGGAACTTGAACTTGTGCTCTCTGCAGAACTTCAATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGGCCCGGGAACTTGAACTTGTGCTCTCTGCAGAACTTCAATCAC  793

seq1  ATATTCCTTACTCTGCACCCCGGTGCGGATGGGCATGATGAGTTAGCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTTACTCTGCACCCCGGTGCGGATGGGCATGATGAGTTAGCTAG  843

seq1  CCAATGTGAACCCTGGACACTGTGCCCTGGGGCTTCACAAAGACACCACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTGAACCCTGGACACTGTGCCCTGGGGCTTCACAAAGACACCACG  893

seq1  AAAACCTGTTAACCCCAGCTCAGGACATTTTGTTGTTTTGGATGATATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGTTAACCCCAGCTCAGGACATTTTGTTGTTTTGGATGATATGG  943

seq1  AAAGGGTAGAGCCTCAGTCGGATCGGAAAGCCATCCTTGCCACAACTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTAGAGCCTCAGTCGGATCGGAAAGCCATCCTTGCCACAACTCTT  993

seq1  TACCATGTATTTGTTGGCACAAATTTGGGCAGCCTCCAGTGCTTCAGGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTATTTGTTGGCACAAATTTGGGCAGCCTCCAGTGCTTCAGGAG  1043

seq1  AAAGCTGTTCATATTCATCTGACACCATGTGGCCACAAAGTAGGAATTC  1099
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTTCATATTCATCTGACACCATGTGGCCACAAAGTAGGAATTC  1092

seq1: chr14_12171251_12172403
seq2: B6Ng01-341E17.g_67_1215

seq1  GAATTCTTTGTGGAGTTTTCACAAACACATCAATGCAATCTTATAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGGAGTTTTCACAAACACATCAATGCAATCTTATAATAAT  50

seq1  AGGAGGCAGTTAGATTTGAAATGACTCACACTGCTTTCATCTGGGGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAGTTAGATTTGAAATGACTCACACTGCTTTCATCTGGGGACTG  100

seq1  ATTTCTTACCCAAGTAGTATTCAGAGACAAATATATAGAGCCCACATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTACCCAAGTAGTATTCAGAGACAAATATATAGAGCCCACATTTT  150

seq1  CATTTCATTTCTAGTTTCATGCTTTTGGTTGTATTTATAAAAAGCTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATTTCTAGTTTCATGCTTTTGGTTGTATTTATAAAAAGCTGCAT  200

seq1  GTTGTTCAAAAATGAAAACTATTCAAATATGTATTATTACATTATTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCAAAAATGAAAACTATTCAAATATGTATTATTACATTATTTCTA  250

seq1  CAATCTTCAGTGTACAAATGGTCTGCTGTCTGATATCTGAGAAATTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTCAGTGTACAAATGGTCTGCTGTCTGATATCTGAGAAATTACAA  300

seq1  GCTAAGATAAAAAACTAATGTTGCCTCAGAAGAAAGACTAATAAGATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGATAAAAAACTAATGTTGCCTCAGAAGAAAGACTAATAAGATACA  350

seq1  TTGGAACTGGGAAGTCTAGAATTGTGAAAGCCTTCATTTCAGAGAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTGGGAAGTCTAGAATTGTGAAAGCCTTCATTTCAGAGAGGAAA  400

seq1  AAAGGGAGTAGATACCAACAAATTATTCCACAAGTGTGGAAACAAGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGTAGATACCAACAAATTATTCCACAAGTGTGGAAACAAGTGTT  450

seq1  GTCATATCTCACCAAGCTGTGGACTAAAGATGTGTCTTCCAGCCATGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATCTCACCAAGCTGTGGACTAAAGATGTGTCTTCCAGCCATGTCC  500

seq1  CTTTACTAGTGCTGTTTAGATTTGTTCAAACATTAAATGCCCTCAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTAGTGCTGTTTAGATTTGTTCAAACATTAAATGCCCTCAGAGAG  550

seq1  TGTGCTATGTGCTTATCTTAAACTCACCCTGGAAGATAAATGCAAAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTATGTGCTTATCTTAAACTCACCCTGGAAGATAAATGCAAAACTT  600

seq1  AAATTCATACTAAAATATAAGTAAAGGGAAGTTGTGAGAGAACCAAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATACTAAAATATAAGTAAAGGGAAGTTGTGAGAGAACCAAACTC  650

seq1  ACTCCATTTCAGAACAGGCAGCCATGTTAGGCCTTAAGCTTCAATTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTTCAGAACAGGCAGCCATGTTAGGCCTTAAGCTTCAATTTTCC  700

seq1  AAAAGGACAGCCCAGGCTTCTCAGAAAACCCACAGAAAAATAGGCAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGACAGCCCAGGCTTCTCAGAAAACCCACAGAAAAATAGGCAATCA  750

seq1  GCAACTGCCCCAACATCCAGCCAGGGGCTTAAAACACGTAAGGAAAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGCCCCAACATCCAGCCAGGGGCTTAAAACACGTAAGGAAAAAGT  800

seq1  CCCTATAAGGTAACCCTCTCTCCCTTGAAGTATGAACCAATAAGAAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAAGGTAACCCTCTCTCCCTTGAAGTATGAACCAATAAGAAGTGT  850

seq1  ACAAATATCCCATACCATAAACTCAACCAACCCTGATGGAAGTGATCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACAAATATCCCATACCATAAACTCAACCAACCCTGATGGAAGTGATC-AG  899

seq1  ATGCAACTGGAAAACCCCTAACTGGA-TTTAAAGTGGGTCTGTGAGCTTC  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGCAACTGGAAAACCCCTAACTGGATTTTAAAGTGGGTCTGTGAGCTTC  949

seq1  CCATGTGGTAGTCGCCATTTTAGATGGTTGTCCCCTGCGTGCTGGCTGTT  999
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  CCATGTGGTAGTCGCCATTTTAGATGG-TGTCCCCTGCGTGCT-GCTGTT  997

seq1  TC-TGCAGAATAAGCACTCTTTGCTTTTGCATAC-TGGGATCTTCTTTCA  1047
      || |||||||| |||||||||||| ||||||||| ||||||| |||||||
seq2  TCTTGCAGAATTAGCACTCTTTGC-TTTGCATACTTGGGATC-TCTTTCA  1045

seq1  ATGACTCTCAGATCCTTACAGTTGTATGTTCTTGAAGAGGGTAAATAGGA  1097
       ||||||||||||| ||| || |||||| |||||||||||||||||||| 
seq2  TTGACTCTCAGATCTTTA-AG-TGTATGGTCTTGAAGAGGGTAAATAGGG  1093

seq1  ATTGTATGGCTTCCTTCCCAAGTATGT-GTGTGATAAACAATGAACAT--  1144
      ||| |||| ||    ||||| |||||| |||||||||||| |||||||  
seq2  ATTTTATGCCT---CTCCCAGGTATGTGGTGTGATAAACATTGAACATTG  1140

seq1  TGTGAAAAG  1153
      |||||||||
seq2  TGTGAAAAG  1149