BAC Information

Click to search

BAC

Clone NameB6Ng01-341F18
Chromosome14 (Build37)
Map Location 79,092,348 - 79,262,469
singlet/doubletdoublet
Overlap geneDgkh, LOC673649, 1300010F03Rik
Upstream geneD230005D02Rik, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11, LOC219180, Akap11
Downstream geneLOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341F18.bB6Ng01-341F18.g
ACCGA124765GA124766
length1,1271,099
definitionB6Ng01-341F18.b B6Ng01-341F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,092,348 - 79,093,476)(79,261,367 - 79,262,469)
sequence
gaattcattaatctttaaaattcacatgatctgagcagtttttgtttgta
cggagccctgaagtaccacatatgttcctgaaactactactgttgctgta
gctgaggtagaaatttctagaactcatttcctaaaactgaaatagaacaa
ggctttcagcagtaagagcccctggcataaacgattttagctctccatat
tcccaaagctcgagaactggctgactattcatgcccacacttttgctcac
aagattcaggaagtcctgtgccgggccctggggatgctttaaagcaaatg
aggacagtgtggaggctttagtgcgaaagcaaatgtaaactgtaaggata
aagagtctgggaatttggtgacactcccctgagaagcccatatccacact
tgggtatgtcttagtctttcttttagcacctcttcaaggtttatgctgaa
atttccttttaataaatttatatatagagagagagacgtagagagagaga
tgtagagagagagaatagagacttgaattgctgtccttaataatgggcat
caaatattggctgccttctctgaacgaagtagagtggtccacctagataa
aaatgattatttgaaattattaagagccatgtgtggtggcatacactaga
gcttcggattaaaggctatatagtaagaccctagcccaaatttacaaaat
atcaattgacgctttggatgctaacattattttgcagacattaattttgc
tctaagacaagcaatgggagccaatcatgtacagtctcagacacaggcaa
gtttagtttactgtgaagtttaaaaaagcctctgcttcagaaacacagta
actctctctcaagagaagagagctggtggggctggagagatggctcagtg
gttagagttttgtagcgaacctgggattagttcctagcacccacaggctc
acatagtctgtaactctggtttcaggaagatcccacacatcttctggctc
ctcggacgaaccaataaaaaactaacctggggagaagcctgctctaactt
acacctgcagacccagcttctctttcacccttgaaatgctgctctcagta
accttgtaagaatgtcgctctccacgg

gaattcaagaaaaataaggggaatgcagtactctgaaactaacaataaca
gaaagtcctggccacccagaggcccaaggggctttggagaaagcaagcat
agcaggtacctaaatgattcactctcctaacagctaagtcctcttgtgaa
agaacacagcaaacccttgggagtaacctgacaaggagagaaatggagaa
taactattttaaaaaaaataataatctcaacacaactgggagtagaaata
agataaacttgaaatatgcccagataatttaatatgttcatcaccataag
ttagggagaacctaggaagatgcttcctggtgcttttgccaagccaaggg
gagagctgaggacagagacactctaaacccacccagactgtttaacctaa
atgcaaacaagggcatgatccgtatttttagtgcatcggtaacattaacc
aaaatatgttacaggctgggcataaagtaagcctcagtaagcttcaaagg
actaaagccctgaagtatgtttcttgaccataatagaattaaagtagaaa
tcaatgacaaaacaagtaaatggaagatccctaacatttaaccatcaagc
tagaggctttttaaaaacacagaggaagaaaccacaatggaaactgtttt
cattgagaaatggggcaatgatcaattaaccacgtctccagcagacaaag
aggaggcggcatgacatcgagatgaaccaggcatttaatcatttctgcct
tagaaatcatgagcttgtccatctttggttacagtgctagacctgggagc
catctaagccataccaatagctctgtctttacacagttcccaaatgtctg
gtttgggctcactactctcccctgcactgcacagctgtcagtggactacc
gcacagttaccctcggtctagagacagcttttcttcacctgagaaaaaaa
cagaactcttctctctgtccgccaactatctccagcagctccaccctgca
attctgcttcagtgactgactgaacttcagcgtctatacatctcacactt
ccttcactcagctgctcctcagagagctcatctcctcaactgaaatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_79092348_79093476
seq2: B6Ng01-341F18.b_49_1175

seq1  GAATTCATTAATCTTTAAAATTCACATGATCTGAGCAGTTTTTGTTTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATCTTTAAAATTCACATGATCTGAGCAGTTTTTGTTTGTA  50

seq1  CGGAGCCCTGAAGTACCACATATGTTCCTGAAACTACTACTGTTGCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCCCTGAAGTACCACATATGTTCCTGAAACTACTACTGTTGCTGTA  100

seq1  GCTGAGGTAGAAATTTCTAGAACTCATTTCCTAAAACTGAAATAGAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGTAGAAATTTCTAGAACTCATTTCCTAAAACTGAAATAGAACAA  150

seq1  GGCTTTCAGCAGTAAGAGCCCCTGGCATAAACGATTTTAGCTCTCCATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCAGCAGTAAGAGCCCCTGGCATAAACGATTTTAGCTCTCCATAT  200

seq1  TCCCAAAGCTCGAGAACTGGCTGACTATTCATGCCCACACTTTTGCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGCTCGAGAACTGGCTGACTATTCATGCCCACACTTTTGCTCAC  250

seq1  AAGATTCAGGAAGTCCTGTGCCGGGCCCTGGGGATGCTTTAAAGCAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCAGGAAGTCCTGTGCCGGGCCCTGGGGATGCTTTAAAGCAAATG  300

seq1  AGGACAGTGTGGAGGCTTTAGTGCGAAAGCAAATGTAAACTGTAAGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGTGTGGAGGCTTTAGTGCGAAAGCAAATGTAAACTGTAAGGATA  350

seq1  AAGAGTCTGGGAATTTGGTGACACTCCCCTGAGAAGCCCATATCCACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCTGGGAATTTGGTGACACTCCCCTGAGAAGCCCATATCCACACT  400

seq1  TGGGTATGTCTTAGTCTTTCTTTTAGCACCTCTTCAAGGTTTATGCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATGTCTTAGTCTTTCTTTTAGCACCTCTTCAAGGTTTATGCTGAA  450

seq1  ATTTCCTTTTAATAAATTTATATATAGAGAGAGAGACGTAGAGAGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTTAATAAATTTATATATAGAGAGAGAGACGTAGAGAGAGAGA  500

seq1  TGTAGAGAGAGAGAATAGAGACTTGAATTGCTGTCCTTAATAATGGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGAGAGAGAATAGAGACTTGAATTGCTGTCCTTAATAATGGGCAT  550

seq1  CAAATATTGGCTGCCTTCTCTGAACGAAGTAGAGTGGTCCACCTAGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTGGCTGCCTTCTCTGAACGAAGTAGAGTGGTCCACCTAGATAA  600

seq1  AAATGATTATTTGAAATTATTAAGAGCCATGTGTGGTGGCATACACTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTATTTGAAATTATTAAGAGCCATGTGTGGTGGCATACACTAGA  650

seq1  GCTTCGGATTAAAGGCTATATAGTAAGACCCTAGCCCAAATTTACAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCGGATTAAAGGCTATATAGTAAGACCCTAGCCCAAATTTACAAAAT  700

seq1  ATCAATTGACGCTTTGGATGCTAACATTATTTTGCAGACATTAATTTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTGACGCTTTGGATGCTAACATTATTTTGCAGACATTAATTTTGC  750

seq1  TCTAAGACAAGCAATGGGAGCCAATCATGTACAGTCTCAGACACAGGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGACAAGCAATGGGAGCCAATCATGTACAGTCTCAGACACAGGCAA  800

seq1  GTTTAGTTTACTGTGAAGTTTAAAAAAGCCTCTGCTTCAGAAACACAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTTTACTGTGAAGTTTAAAAAAGCCTCTGCTTCAGAAACACAGTA  850

seq1  ACTCTCTCTCAAGAGAAGAGAGCTGGTGGGGCTGGAGAGATGGCTCAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCTCAAGAGAAGAGAGCTGGTGGGGCTGGAGAGATGGCTCAGTG  900

seq1  GTTAGAGTTTTTGTAGCGAACCTGGGATTAGTTCCTAGCACCCACAAGGC  950
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTAGAG-TTTTGTAGCGAACCTGGGATTAGTTCCTAGCACCCAC-AGGC  948

seq1  TCACAATAGTCTGTAACTCTGGTTCCAGG-AGATCCAACACCATCTTCTG  999
      |||| ||||||||||||||||||| |||| |||||| ||| |||||||||
seq2  TCAC-ATAGTCTGTAACTCTGGTTTCAGGAAGATCCCACA-CATCTTCTG  996

seq1  GCTTCCTCGGACGAACAAATAAAAAAACTAA-CTGGGGAAGAGCCTGCTC  1048
      || ||||||||||||| ||| |||||||||| |||||||  |||||||||
seq2  GC-TCCTCGGACGAACCAAT-AAAAAACTAACCTGGGGAGAAGCCTGCTC  1044

seq1  TAACTAACA-CTGCAGACCCGGCTTCTCCTTCACCC-TGAAGTGCTTGCC  1096
      ||||| ||| |||||||||| ||||||| ||||||| |||| ||| ||| 
seq2  TAACTTACACCTGCAGACCCAGCTTCTCTTTCACCCTTGAAATGC-TGCT  1093

seq1  CTCAGTAA-CTTGTAGAGAATGTCGCTCT-CACGG  1129
      |||||||| |||||| ||||||||||||| |||||
seq2  CTCAGTAACCTTGTA-AGAATGTCGCTCTCCACGG  1127


seq1: chr14_79261367_79262469
seq2: B6Ng01-341F18.g_68_1166 (reverse)

seq1  AAGA-TTCAGTGGAGGAGATGAAGCTCTCTGAGGAGCAGCTGAGTGAAAG  49
      |||| |||||| ||||||||| |||||||||||||||||||||||||| |
seq2  AAGATTTCAGTTGAGGAGATG-AGCTCTCTGAGGAGCAGCTGAGTGAAGG  49

seq1  AAGTGTGAGATGTATAGACGGCTGAAGGTTCAGTCAGTCACTGAAGCAAG  99
      ||||||||||||||||||| |||||| |||||||||||||||||||| ||
seq2  AAGTGTGAGATGTATAGAC-GCTGAA-GTTCAGTCAGTCACTGAAGC-AG  96

seq1  AATGCAAGGGTGGAGCTGGCTGGAGATAGTTGGGCGGACAGAGAGAAGAG  149
      |||   ||||||||||| ||||||||||||| ||||||||||||||||||
seq2  AATTGCAGGGTGGAGCT-GCTGGAGATAGTT-GGCGGACAGAGAGAAGAG  144

seq1  TTCTG-TTTTTTCTCAGGTTGAAG-AAAGCTGTCTCTAGACCGAGGGTAA  197
      ||||| |||||||||||| ||||| |||||||||||||||||||||||||
seq2  TTCTGTTTTTTTCTCAGG-TGAAGAAAAGCTGTCTCTAGACCGAGGGTAA  193

seq1  CTGTGCGGTAGTCCACTGACAGCTGTGCAGTGCAGGGGAGAGTAGTGAGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCGGTAGTCCACTGACAGCTGTGCAGTGCAGGGGAGAGTAGTGAGC  243

seq1  CCAAACCAGACATTTGGGAACTGTGTAAAGACAGAGCTATTGGTATGGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAGACATTTGGGAACTGTGTAAAGACAGAGCTATTGGTATGGCT  293

seq1  TAGATGGCTCCCAGGTCTAGCACTGTAACCAAAGATGGACAAGCTCATGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGCTCCCAGGTCTAGCACTGTAACCAAAGATGGACAAGCTCATGA  343

seq1  TTTCTAAGGCAGAAATGATTAAATGCCTGGTTCATCTCGATGTCATGCCG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGGCAGAAATGATTAAATGCCTGGTTCATCTCGATGTCATGCCG  393

seq1  CCTCCTCTTTGTCTGCTGGAGACGTGGTTAATTGATCATTGCCCCATTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTTTGTCTGCTGGAGACGTGGTTAATTGATCATTGCCCCATTTC  443

seq1  TCAATGAAAACAGTTTCCATTGTGGTTTCTTCCTCTGTGTTTTTAAAAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAAAACAGTTTCCATTGTGGTTTCTTCCTCTGTGTTTTTAAAAAG  493

seq1  CCTCTAGCTTGATGGTTAAATGTTAGGGATCTTCCATTTACTTGTTTTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGCTTGATGGTTAAATGTTAGGGATCTTCCATTTACTTGTTTTGT  543

seq1  CATTGATTTCTACTTTAATTCTATTATGGTCAAGAAACATACTTCAGGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTTCTACTTTAATTCTATTATGGTCAAGAAACATACTTCAGGGC  593

seq1  TTTAGTCCTTTGAAGCTTACTGAGGCTTACTTTATGCCCAGCCTGTAACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCCTTTGAAGCTTACTGAGGCTTACTTTATGCCCAGCCTGTAACA  643

seq1  TATTTTGGTTAATGTTACCGATGCACTAAAAATACGGATCATGCCCTTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGTTAATGTTACCGATGCACTAAAAATACGGATCATGCCCTTGT  693

seq1  TTGCATTTAGGTTAAACAGTCTGGGTGGGTTTAGAGTGTCTCTGTCCTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTAGGTTAAACAGTCTGGGTGGGTTTAGAGTGTCTCTGTCCTCA  743

seq1  GCTCTCCCCTTGGCTTGGCAAAAGCACCAGGAAGCATCTTCCTAGGTTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCCTTGGCTTGGCAAAAGCACCAGGAAGCATCTTCCTAGGTTCT  793

seq1  CCCTAACTTATGGTGATGAACATATTAAATTATCTGGGCATATTTCAAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAACTTATGGTGATGAACATATTAAATTATCTGGGCATATTTCAAGT  843

seq1  TTATCTTATTTCTACTCCCAGTTGTGTTGAGATTATTATTTTTTTTAAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTATTTCTACTCCCAGTTGTGTTGAGATTATTATTTTTTTTAAAA  893

seq1  TAGTTATTCTCCATTTCTCTCCTTGTCAGGTTACTCCCAAGGGTTTGCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTCTCCATTTCTCTCCTTGTCAGGTTACTCCCAAGGGTTTGCTG  943

seq1  TGTTCTTTCACAAGAGGACTTAGCTGTTAGGAGAGTGAATCATTTAGGTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTCACAAGAGGACTTAGCTGTTAGGAGAGTGAATCATTTAGGTA  993

seq1  CCTGCTATGCTTGCTTTCTCCAAAGCCCCTTGGGCCTCTGGGTGGCCAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTATGCTTGCTTTCTCCAAAGCCCCTTGGGCCTCTGGGTGGCCAGG  1043

seq1  ACTTTCTGTTATTGTTAGTTTCAGAGTACTGCATTCCCCTTATTTTTCTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGTTATTGTTAGTTTCAGAGTACTGCATTCCCCTTATTTTTCTT  1093

seq1  GAATTC  1103
      ||||||
seq2  GAATTC  1099


| Home | SequenceCutter | Blast | Download |