BAC Information

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BAC

Clone NameB6Ng01-342D05
Chromosome14 (Build37)
Map Location 7,373,280 - 7,575,115
singlet/doubletdoublet
Overlap geneLOC100042024, LOC100041664, LOC100042077, LOC100041675, LOC666329, EG666833, LOC100042043
Upstream geneLOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825, LOC100041421, LOC100041817, LOC100041431, LOC100041438, LOC100041442, LOC100041848, LOC100041456, LOC100041758, LOC100041470, LOC100041804, LOC100041487, LOC100041747, LOC100041507, LOC100041836, LOC100041728, LOC100041774, LOC100041530, LOC100041540, LOC100041840, EG666844, LOC666851, LOC100041569, LOC100041970, LOC100042000, EG666874, B930046C15Rik, LOC100041600, LOC100041958, LOC100041964, LOC546590, LOC666906
Downstream geneEG666918, LOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342D05.bB6Ng01-342D05.g
ACCGA125353GA125354
length1,1571,135
definitionB6Ng01-342D05.b B6Ng01-342D05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,573,963 - 7,575,115)(7,373,280 - 7,374,451)
sequence
gaattctccagctttggaaggagaagttgccaaaggggatcccacgggtc
caagagaggctccaggagaggctccccagaaaaggaccaagctgggcaga
actagttaacaggtaggtcatggcagttgctagtgacatcatcagtaatg
ccttccttggagaatctcttgtatctaggatagaactagaatcttctgtg
ttgtcacctgtgttgtggtgacagcaactgcctgtggttcatcccttctg
tttgctctgggttcaccagcaggaatgttttcctggctgctcaggctatt
tcagaaagagaatggcgatgaaggagagaccagaccaacagagaaggaag
agggaatcctttctcatgaaaaaggaagaaggaaatggttatggagaagg
cacagtgagtcctgggcagagttggggaacttcctggtagaggtaggctt
gagctgggccttccaggagtaggtcttacaagctgaagccttggactttg
tcaatgtcagaaaaagagtcaagaatttctgatgattagtttgacagagc
caggaattgacaaacctgcagctactttgctgggagctatttaatttcat
tttgagtggcaaaaaatgtcaggagtgggcactatgagaataacagtgtg
tcctttcatggaagggagttgaagcacttcatcttccagattactgtagg
taacttgagtctctgatgaaaagaacagagaaggatgctcccctggtcat
gtcatgtggtgaggactcagacacattggatttgaagacactcgattaat
tagtgcttgatagtgctaagcactatgaacttcaggatttccctgcgtcc
catctgatatgacctgacaatgttccccatatctttatgtctgaggcagc
ttatacatttcaaggcaaccggggcctgtaacagggagtgtggcatatgt
ctgacaatggtggttaggaagaggacatagcttagcaaaccagctgggag
atagctttctgctctttaggaattccactgtctttatcttttctctcctc
atcttcttctgggaactcaaggatggtctccctgcccctgggccatcagg
ttatgcaaattcttttgtgagtttacttattctgcagggtcctgctctag
aaatact
gaattctttatatattttgtatattagccgtgcattggatggggagttgg
taaacattatttccgaatatgtagcttgccaatttgtcctattggctatg
ccctttgtcttacagaagcttttcagtttcttgtggcccatttataaatt
ttgatgttagaacctgagctattggagttcgtttatgatatttatctcca
ttcccatgagtttgaggctctttcctgctttctcttccattagattcagt
ggggatttggctgcactgatgaatctgcctttagttttagcttcaatagc
tgcttggctggactttttggtcctggagttcataagccttctgctttagt
gtggaaattctggagttgcttgagaccattctgatcatcacccctaaaag
agagagaagccttgcatattatcaggtttattctggccaaaatgcagaag
agtatatttctcttgtcctattttgaaaggacagctgactatctctctga
tgcttattttctggatggaaagacttcctatgcaataggtctgcagtgtc
aaagacatataggttaaaatactcatagatgttttttgtttcaccaggca
accaaggcatactatgctttctcttctctcttctgtcttctctctcctct
cttctttctcctctctcctccctcctcccttctcccttcttcccttctcc
cttcccttattctcattctctctctctctctctctctctctttctctctc
tctctctttctttctttcttcctctatctccctctctccctctctcctga
tggagcctaaactttgatggcctgatttctcctattcagagagaaaaaca
aaagattccttggagattcatgtggagaaaagggattttctgggacttct
gccattctctctgtgagggagtgaaattaagttaatcagatacattggat
acatattagctttatttagcgttattctggctagtcttgagctaaagaga
tacttgctagcagagtaggtttctgttttctttctgctagcttggaatat
agtcagtgtagtgaatatagcataatttcatttagcaaaaggtattggat
ggggtgtggtgctgcaactgtattccaaccactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_7573963_7575115
seq2: B6Ng01-342D05.b_45_1201 (reverse)

seq1  AGTATTTCT--AGCA-GACCCTGCAG-ATAGGTAAA--CACAAAAGAATT  44
      |||||||||  |||| |||||||||| ||| |||||  ||||||||||||
seq2  AGTATTTCTAGAGCAGGACCCTGCAGAATAAGTAAACTCACAAAAGAATT  50

seq1  TGCAT-ACTTGATGGCCCAGGGGCAGGGGAGACCATTC-TGAGTCCCAAG  92
      ||||| || |||||||||||||||| |||||||||| | ||||| || ||
seq2  TGCATAACCTGATGGCCCAGGGGCA-GGGAGACCATCCTTGAGTTCCCAG  99

seq1  AAGAAGATGGAGGGAGAGAAAAGATAAAGACAGT-GAATTCCTAAAAGAG  141
      |||||||||   |||||||||||||||||||||| |||||||| ||||||
seq2  AAGAAGATG--AGGAGAGAAAAGATAAAGACAGTGGAATTCCT-AAAGAG  146

seq1  CAGAAAAGCTATCTTCCAGCTGGTTTGCTAAGCTATGTTCCTCTTCCTAA  191
      ||| |||||||||| |||||||||||||||||||||| ||||||||||||
seq2  CAG-AAAGCTATCTCCCAGCTGGTTTGCTAAGCTATG-TCCTCTTCCTAA  194

seq1  CCACCATTGTCAGACATATGCCACACTCCCTGTTACAGG-CCCGGTTGCC  240
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCACCATTGTCAGACATATGCCACACTCCCTGTTACAGGCCCCGGTTGCC  244

seq1  TTGAAATGTATAAGCTGCCTCAGACATAAAGATATGGGGAACATTGTCAG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGTATAAGCTGCCTCAGACATAAAGATATGGGGAACATTGTCAG  294

seq1  GTCATATCAGATGGGACGCAGGGAAATCCTGAAGTTCATAGTGCTTAGCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATCAGATGGGACGCAGGGAAATCCTGAAGTTCATAGTGCTTAGCA  344

seq1  CTATCAAGCACTAATTAATCGTGTGTCTTCAAATCCAAAGTGTCTGAGTC  390
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  CTATCAAGCACTAATTAATCGAGTGTCTTCAAATCCAATGTGTCTGAGTC  394

seq1  CTCACCACATGACATGACCAGGGGAGCATCCTTCTCTGTTCTTTTCATCA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCACATGACATGACCAGGGGAGCATCCTTCTCTGTTCTTTTCATCA  444

seq1  GAGACTCAAGTTACCTACAGTAATCTGGAAGATGAAGTGCTTCAACTCCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCAAGTTACCTACAGTAATCTGGAAGATGAAGTGCTTCAACTCCC  494

seq1  TTCCATGAAAGGACACACTGTTATTCTCATAGTGCCCACTCCTGACATTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGAAAGGACACACTGTTATTCTCATAGTGCCCACTCCTGACATTT  544

seq1  TTTGCCACTCAAAATGAAATTAAATAGCTCCCAGAAAAGTAGCTGCAGGT  590
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTGCCACTCAAAATGAAATTAAATAGCTCCCAGCAAAGTAGCTGCAGGT  594

seq1  TTGTCAATTCCTGGCTCTGTCAAACTAATCATCAGAAATTCTTGACTCTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAATTCCTGGCTCTGTCAAACTAATCATCAGAAATTCTTGACTCTT  644

seq1  TTTCTGACATTGACAAAGTCCAAGGCTTCAGCTTGTAAGACCTACTCCTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACATTGACAAAGTCCAAGGCTTCAGCTTGTAAGACCTACTCCTG  694

seq1  GAAGGCCCAGCTCAAGCCTACCTCTACCAGAAAGTTCCCCAACTCTGCCC  740
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAAGGCCCAGCTCAAGCCTACCTCTACCAGGAAGTTCCCCAACTCTGCCC  744

seq1  AGGACTCACTGTGCCTTCTCCATAACCATTTCCTTCTTCCTTTTTCATGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCACTGTGCCTTCTCCATAACCATTTCCTTCTTCCTTTTTCATGA  794

seq1  GAAAGGATTCCCTCTTCCTTCTCTGTTGGTCTGGTCTCTCCTTCATCGCC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATTCCCTCTTCCTTCTCTGTTGGTCTGGTCTCTCCTTCATCGCC  844

seq1  ATTCTCTTTCTGAAATAGCCTGAGCAGCCAGGAAAACATTCCTGCTGGTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTCTGAAATAGCCTGAGCAGCCAGGAAAACATTCCTGCTGGTG  894

seq1  AACCCAGAGCAAACAGAAGGGATGAACCACAGGCAGTTGCTGTCACCACA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGAGCAAACAGAAGGGATGAACCACAGGCAGTTGCTGTCACCACA  944

seq1  ACACAGGTGACAACACAGAAGATTCTAGTTCTATCCTAGATACAAGAGAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTGACAACACAGAAGATTCTAGTTCTATCCTAGATACAAGAGAT  994

seq1  TCTCCAAGGAAGGCATTACTGATGATGTCACTAGCAACTGCCATGACCTA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGGAAGGCATTACTGATGATGTCACTAGCAACTGCCATGACCTA  1044

seq1  CCTGTTAACTAGTTCTGCCCAGCTTGGTCCTTTTCTGGGGTGCCTCTCCT  1090
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTGTTAACTAGTTCTGCCCAGCTTGGTCCTTTTCTGGGGAGCCTCTCCT  1094

seq1  GGAGCCTCTCATGGACCCGTGGGATCCCCTTTGGCAACCTCTCCTTCCAA  1140
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  GGAGCCTCTCTTGGACCCGTGGGATCCCCTTTGGCAACTTCTCCTTCCAA  1144

seq1  AGCTGGAGAATTC  1153
      |||||||||||||
seq2  AGCTGGAGAATTC  1157

seq1: chr14_7373280_7374451
seq2: B6Ng01-342D05.g_66_1200

seq1  GAATTCTTTATATATTTTGTATATTAGCCGTGCATTGGATGGGGAGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATATATTTTGTATATTAGCCGTGCATTGGATGGGGAGTTGG  50

seq1  TAAACATTATTTCCGAATATGTAGCTTGCCTTTTTGTCCTATTGGCTATG  100
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  TAAACATTATTTCCGAATATGTAGCTTGCCAATTTGTCCTATTGGCTATG  100

seq1  CCCTTTGTCTTACAGAAGCTTTTCAGTTTCTTGTGGCCCATTTATAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGTCTTACAGAAGCTTTTCAGTTTCTTGTGGCCCATTTATAAATT  150

seq1  TTGATGTTAGAACCTGAGCTATTGGAGTTCGTTTATGATATTTATCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTTAGAACCTGAGCTATTGGAGTTCGTTTATGATATTTATCTCCA  200

seq1  TTCCCATGAGTTTGAGGCTCTTTCCTGCTTTCTCTTCCATTAGATTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATGAGTTTGAGGCTCTTTCCTGCTTTCTCTTCCATTAGATTCAGT  250

seq1  GGGGATTTGGCTGCACTGATGAATCTGCCTTTAGTTTTAGCTTCAATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTTGGCTGCACTGATGAATCTGCCTTTAGTTTTAGCTTCAATAGC  300

seq1  TGCTTGGCTGGACTTTTTGGTCCTGGAGTTCATAAGCCTTCTGCTTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCTGGACTTTTTGGTCCTGGAGTTCATAAGCCTTCTGCTTTAGT  350

seq1  GTGGAAATTCTGGAGTTGCTTGAGACCATTCTGATCATCACCCCTAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATTCTGGAGTTGCTTGAGACCATTCTGATCATCACCCCTAAAAG  400

seq1  AGAGAGAAGCCTTGCATATTATCAGGTTTATTCTGGCCAAAATGCAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGCCTTGCATATTATCAGGTTTATTCTGGCCAAAATGCAGAAG  450

seq1  AGTATATTTCTCTTGTCCTATTTTGAAAGGACAGCTGACTATCTCTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTTCTCTTGTCCTATTTTGAAAGGACAGCTGACTATCTCTCTGA  500

seq1  TGCTTATTTTCTGGATGGAAAGACTTCCTATGCAATAGGTCTGCAGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTTTCTGGATGGAAAGACTTCCTATGCAATAGGTCTGCAGTGTC  550

seq1  AAAGACATATAGGTTAAAATACTCATAGATGTTTTTTGTTTCACCAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATATAGGTTAAAATACTCATAGATGTTTTTTGTTTCACCAGGCA  600

seq1  ACCAAGGCATACTATGCTTTCTCTTCTCTCTTCTGTCTTCTCTCTCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGCATACTATGCTTTCTCTTCTCTCTTCTGTCTTCTCTCTCCTCT  650

seq1  CTTCTTTCTCCTCTCTCCTCCCTCCTCCCTTCTCCCTTCTCCCCTTCTCC  700
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTCTTTCTCCTCTCTCCTCCCTCCTCCCTTCTCCCTTCTTCCCTTCTCC  700

seq1  CTTCCCTTATTCTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  750
      ||||||||||||||||              ||||||||||||||||||||
seq2  CTTCCCTTATTCTCAT--------------TCTCTCTCTCTCTCTCTCTC  736

seq1  TCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTCCTCTATCTCCCTCTC  800
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTCTCTCTCTCTCTTTCTTTCTTTCTTCCTCTATCTCCCTCTC  786

seq1  TCCCTCTCTCCTGATGGAGCCTAAACTTTGATGGCCTGATTTCTCCTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCTCCTGATGGAGCCTAAACTTTGATGGCCTGATTTCTCCTATT  836

seq1  CAGAGAGAAAAACAAAAGATTCCTTGGAGATTCATGTGGAGAAAAGGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAAAAACAAAAGATTCCTTGGAGATTCATGTGGAGAAAAGGGAT  886

seq1  TTTCTGGGACTTCCTGCCATTCTCTCTGTGAGGGAGTGAAATTAAGTTAA  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGACTT-CTGCCATTCTCTCTGTGAGGGAGTGAAATTAAGTTAA  935

seq1  TCAGATACATTTGGATACATATTAGCTTTATTTAGCGTTATTCTGGCTAA  1000
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  TCAGATACA-TTGGATACATATTAGCTTTATTTAGCGTTATTCTGGCT-A  983

seq1  GTCTTGAGCCTAAAGGAGATACTTGCTAGCAGAGTAAGTTTCTTGGTTTT  1050
      |||||||| ||||| ||||||||||||||||||||| ||||||  |||||
seq2  GTCTTGAG-CTAAA-GAGATACTTGCTAGCAGAGTAGGTTTCT--GTTTT  1029

seq1  CTTTCTTGCTAGCTTTGGAATATAGTCCAGTGTTAGTGAATATAGGCATA  1100
      ||||| ||||||| |||||||||||| ||||| ||||||||||| |||||
seq2  CTTTC-TGCTAGC-TTGGAATATAGT-CAGTG-TAGTGAATATA-GCATA  1074

seq1  ATTTAAATTTTAGCCCAAAAAGTATTTGGGGAATTGGGTGTGGTGCTGCA  1150
      |||| |  |||||  ||||| |||||    | || |||||||||||||  
seq2  ATTTCA--TTTAG--CAAAAGGTATT----GGATGGGGTGTGGTGCTG--  1114

seq1  CACCTGTATTCACAACAACTAG  1172
      || |||||||| |||| |||||
seq2  CAACTGTATTC-CAACCACTAG  1135