BAC Information

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BAC

Clone NameB6Ng01-342F09
Chromosome14 (Build37)
Map Location 12,667,214 - 12,794,635
singlet/doubletdoublet
Overlap genePtprg
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream geneLOC100042441, 3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342F09.bB6Ng01-342F09.g
ACCGA125452GA125453
length1,2001,114
definitionB6Ng01-342F09.b B6Ng01-342F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,667,214 - 12,668,415)(12,793,526 - 12,794,635)
sequence
gaattctgcatcttgatcccaaggcagccaagaggaaactctcttccaaa
ggccactaggaggagggtctagaccacactggcccaggagtggtatatga
ggtatatgggacctcaaagcccaccttcagagtgacaaacttcctctaac
aaggctacacctcctccagtacagcagtacctcctaatagcacagcttcc
catggaccagttccattcagaccaccacactccccacttagatgttgggc
aaagtttgaagatcaactagattggtagaatttgggtcctttagggagca
caatttatatgtaagggacggtgacaagaatgcaatatcatcctctctgt
gtacagcacaggcacctattcctcaatgcagggagcaacctactggattc
tagcattctaaattcttttatgaatttaggatttttagttcaataaatat
ttatggggtggatgctagagcagccaagccgtttatgccctaaacagaga
atattgtgccccatttctaccacccacagcaagaacaagccaaacccctt
tctgtgcaggatccagggcagtttgcatcacacacggatccttttctctg
ctcagctttgctatctcagacccagctgtaggcccctgattgacagaagg
acttagtagtttttaccctagtattttacctgatatagttggttttactt
taacaataagataaaagaatgatctggtctaatccaaagtgttcatgtgc
tgaagtaagatgcctagtcaaaggctaacattagagtaacaggctagaac
acctcactgaagttctgagatgagactacatcccattggtagcctctcat
tgtggaatattctgggcatcaacaatttccttttctgtggacttgtacaa
caaagcaggttaggatagaggtgaaacgaatcgttctaaggacttacctt
atagggttctccttcgggttcagtaacagctacttttaaaagtgcctgtt
ccctccttccctatcttctcccgtctataattgtgggaaagagatgctcc
agagataaagggcctcaggaatctggagctttgatgtgcttcctttctgg
tgtctcttttcagtgcgtagaattatgtgtcaattccaggagctgttaag
aactgatgtagccacgtccgtagtttggttctggttccatagcccgctct

gaattcaagagtaacggaagtgggaattacagctgtgcacagttgtgaaa
agtcaccatgtagacacgtggaggttgctcacaatccttcaagtaaccaa
tcccccatgctttgtaaagaagcctaataaatgccccaattccccaattt
ggcctctggtaggattgattttggtttgtcacttgtgtccttgaaggagg
gagacagaaatttggttacatctccctattgtggcaaagagtcaccacaa
taattttaagactgagacatcccatttaatatataggagaaaatggagat
atttccagaaagcaagatacttctgaaacactggttcttgaagctgcccc
aggattcaagaaatcagatgagaaacatacaataagccacatgtgacagg
catgtctctttgactaaaacaaaacaaaataaaaacaaacaacaaactac
aagacaataacaacaaaaccttaggcaactgagcaccaaaaaggttttgg
agtcttgttctctattgaggcatcaacagtggccagccagccagagctgt
ggacggccatcttcatcagtacttcccatgcccagcagtgcagcgcacaa
cctcatcaatggtaattcacgaaaatattggcccataattccatttcctc
tcctgctttctttaactccatgcataagaaaattatgctcagttcatgac
aacccatcaaaacatccacaacataaagacatgaaccaattcaaaaccca
aatactaaaaaagtagctctcttcctcaaacccaagatgaggaattcaag
aatcatttggatttccattcccataaagctttagtttttgcaagggaatg
tgattatctaaatttcatacaaaagtttctctttaaactgctccagggct
cactctccttttttgttccctctaaagttgattcatttcattcatttaca
aattctattgggctgctaaatacacgggaagctgccaatcgataacactg
attggcttaggaccaaaggcaggcctgttgttggagaaggaggcactcgg
ttctcattgtccttcctcttcttaaaagtcccaggtcacaggcggtgcag
agaatcctggcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12667214_12668415
seq2: B6Ng01-342F09.b_49_1248

seq1  GAATTCTGCATCTTGATCCCAAGGCAGCCAAGAGGAAACTCTCTTCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATCTTGATCCCAAGGCAGCCAAGAGGAAACTCTCTTCCAAA  50

seq1  GGCCACTAGGAGGAGGGTCTAGACCACACTGGCCCAGGAGTGGTATATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTAGGAGGAGGGTCTAGACCACACTGGCCCAGGAGTGGTATATGA  100

seq1  GGTATATGGGACCTCAAAGCCCACCTTCAGAGTGACAAACTTCCTCTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATGGGACCTCAAAGCCCACCTTCAGAGTGACAAACTTCCTCTAAC  150

seq1  AAGGCTACACCTCCTCCAGTACAGCAGTACCTCCTAATAGCACAGCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTACACCTCCTCCAGTACAGCAGTACCTCCTAATAGCACAGCTTCC  200

seq1  CATGGACCAGTTCCATTCAGACCACCACACTCCCCACTTAGATGTTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACCAGTTCCATTCAGACCACCACACTCCCCACTTAGATGTTGGGC  250

seq1  AAAGTTTGAAGATCAACTAGATTGGTAGAATTTGGGTCCTTTAGGGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGAAGATCAACTAGATTGGTAGAATTTGGGTCCTTTAGGGAGCA  300

seq1  CAATTTATATGTAAGGGACGGTGACAAGAATGCAATATCATCCTCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATATGTAAGGGACGGTGACAAGAATGCAATATCATCCTCTCTGT  350

seq1  GTACAGCACAGGCACCTATTCCTCAATGCAGGGAGCAACCTACTGGATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCACAGGCACCTATTCCTCAATGCAGGGAGCAACCTACTGGATTC  400

seq1  TAGCATTCTAAATTCTTTTATGAATTTAGGATTTTTAGTTCAATAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCTAAATTCTTTTATGAATTTAGGATTTTTAGTTCAATAAATAT  450

seq1  TTATGGGGTGGATGCTAGAGCAGCCAAGCCGTTTATGCCCTAAACAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGGTGGATGCTAGAGCAGCCAAGCCGTTTATGCCCTAAACAGAGA  500

seq1  ATATTGTGCCCCATTTCTACCACCCACAGCAAGAACAAGCCAAACCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGCCCCATTTCTACCACCCACAGCAAGAACAAGCCAAACCCCTT  550

seq1  TCTGTGCAGGATCCAGGGCAGTTTGCATCACACACGGATCCTTTTCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCAGGATCCAGGGCAGTTTGCATCACACACGGATCCTTTTCTCTG  600

seq1  CTCAGCTTTGCTATCTCAGACCCAGCTGTAGGCCCCTGATTGACAGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTTGCTATCTCAGACCCAGCTGTAGGCCCCTGATTGACAGAAGG  650

seq1  ACTTAGTAGTTTTTACCCTAGTATTTTACCTGATATAGTTGGTTTTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTAGTTTTTACCCTAGTATTTTACCTGATATAGTTGGTTTTACTT  700

seq1  TAACAATAAGAT-AAAGAATGATCTGGTCTAATCCAAAGTGTTCATGTGC  749
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAACAATAAGATAAAAGAATGATCTGGTCTAATCCAAAGTGTTCATGTGC  750

seq1  TGAAGTAAGATGCCTAGTCAAAGGCTAACATTAGAGTAACAGGCTAGAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAAGATGCCTAGTCAAAGGCTAACATTAGAGTAACAGGCTAGAAC  800

seq1  ACCTCACTGAAGTTCTGAGATGAGACTACATCCCATTGGTAGCCTCTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACTGAAGTTCTGAGATGAGACTACATCCCATTGGTAGCCTCTCAT  850

seq1  TGTGGAATATTCTGGGCATCAAACAATTCCTTTTCTGTGGACTTGTACAA  899
      ||||||||||||||||||||||  | ||||||||||||||||||||||||
seq2  TGTGGAATATTCTGGGCATCAACAATTTCCTTTTCTGTGGACTTGTACAA  900

seq1  CAAAGCAGGTTAGGATAGA-GTGAAACGAATCGT--CAAAGACTTACCTT  946
      ||||||||||||||||||| ||||||||||||||   || ||||||||||
seq2  CAAAGCAGGTTAGGATAGAGGTGAAACGAATCGTTCTAAGGACTTACCTT  950

seq1  ATAGGGTCCTCCTTC-GGTTCAGTAACCAGCTACTTTTAAAAGTGCCTGT  995
      ||||||| ||||||| |||||||||| |||||||||||||||||||||||
seq2  ATAGGGTTCTCCTTCGGGTTCAGTAA-CAGCTACTTTTAAAAGTGCCTGT  999

seq1  TCCCTCCTTCCCCTATCTTCTCCCCGTCTATAATTGTTGGAAAGAGATGC  1045
      ||||||||| ||||||||||| ||||||||||||||| ||||||||||||
seq2  TCCCTCCTT-CCCTATCTTCT-CCCGTCTATAATTGTGGGAAAGAGATGC  1047

seq1  TCCAGAGATAAAGGG-CTCAGGAATCTGGAGCTTTGATGTTGCCTTCCCT  1094
      ||||||||||||||| ||||||||||||||||||||||| |||  | |||
seq2  TCCAGAGATAAAGGGCCTCAGGAATCTGGAGCTTTGATG-TGC--TTCCT  1094

seq1  TTCTGGTGTCTCTTTTCAGTGCGTAGAAATGATGTGTCAATCACA-GAGG  1143
      |||||||||||||||||||||||||| ||| ||||||||||  || ||| 
seq2  TTCTGGTGTCTCTTTTCAGTGCGTAG-AATTATGTGTCAATTCCAGGAGC  1143

seq1  TGTTAAG-ACTGAGTGTAGCCACAGCCTGTAGTTTGTGTTCTGGCTCCAT  1192
      ||||||| ||||| ||||||||| | | |||||||| ||||||| |||||
seq2  TGTTAAGAACTGA-TGTAGCCAC-GTCCGTAGTTTG-GTTCTGGTTCCAT  1190

seq1  AGCCGGCTCT  1202
      |||| |||||
seq2  AGCCCGCTCT  1200

seq1: chr14_12793526_12794635
seq2: B6Ng01-342F09.g_69_1182 (reverse)

seq1  CATG-CAGGATTCCTCTGCA-CGGCTGTGA-CTGGGACCTTTTTAGGAAG  47
      |||| ||||||| ||||||| || |||||| |||||||  ||||| ||||
seq2  CATGCCAGGATT-CTCTGCACCGCCTGTGACCTGGGAC--TTTTAAGAAG  47

seq1  AGGA--GACAATGAGAACCCGAGTGCTTCCCTTCTCCAAC-ACAGGCTTG  94
      ||||  ||||||||||| |||||||| | ||||||||||| |||||| ||
seq2  AGGAAGGACAATGAGAA-CCGAGTGCCT-CCTTCTCCAACAACAGGCCTG  95

seq1  CCTTTGGTCCTAAGCCAATCAGTG-TATCGATTGGCAGCTT-CCGTGTAT  142
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  CCTTTGGTCCTAAGCCAATCAGTGTTATCGATTGGCAGCTTCCCGTGTAT  145

seq1  TTAGCAGCCAATAAGAATTTGTTAAATGAATG-AATGAATCAACTTTAGA  191
      ||||||||| |  |||||||| |||||||||| |||||||||||||||||
seq2  TTAGCAGCCCAATAGAATTTG-TAAATGAATGAAATGAATCAACTTTAGA  194

seq1  GGGAAC-AAAAAGGAGAGTGAG-CCTGGAGCAGTTTAAAAGAGAAACTTT  239
      |||||| ||||||||||||||| ||||||||||||| |||||||||||||
seq2  GGGAACAAAAAAGGAGAGTGAGCCCTGGAGCAGTTT-AAAGAGAAACTTT  243

seq1  TGTATG-AATTTAGATAATCACATTCCCCTTGCAAAAACTAAAGCTTTAT  288
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTATGAAATTTAGATAATCACATT-CCCTTGCAAAAACTAAAGCTTTAT  292

seq1  TGGAATGGAAATCCAAATGATTCTTGAATTCCTCATCTTGGGTTTGAGGA  338
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGGAAATCCAAATGATTCTTGAATTCCTCATCTTGGGTTTGAGGA  342

seq1  AGAGAGCTACTTTTTTAGTATTTGGGTTTTGAATTGGTTCATGTCTTTAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTACTTTTTTAGTATTTGGGTTTTGAATTGGTTCATGTCTTTAT  392

seq1  GTTGTGGATGTTTTGATGGGTTGTCATGAACTGAGCATAATTTTCTTATG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGATGTTTTGATGGGTTGTCATGAACTGAGCATAATTTTCTTATG  442

seq1  CATGGAGTTAAAGAAAGCAGGAGAGGAAATGGAATTATGGGCCAATATTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGTTAAAGAAAGCAGGAGAGGAAATGGAATTATGGGCCAATATTT  492

seq1  TCGTGAATTACCATTGATGAGGTTGTGCGCTGCACTGCTGGGCATGGGAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAATTACCATTGATGAGGTTGTGCGCTGCACTGCTGGGCATGGGAA  542

seq1  GTACTGATGAAGATGGCCGTCCACAGCTCTGGCTGGCTGGCCACTGTTGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGATGAAGATGGCCGTCCACAGCTCTGGCTGGCTGGCCACTGTTGA  592

seq1  TGCCTCAATAGAGAACAAGACTCCAAAACCTTTTTGGTGCTCAGTTGCCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAATAGAGAACAAGACTCCAAAACCTTTTTGGTGCTCAGTTGCCT  642

seq1  AAGGTTTTGTTGTTATTGTCTTGTAGTTTGTTGTTTGTTTTTATTTTGTT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTGTTGTTATTGTCTTGTAGTTTGTTGTTTGTTTTTATTTTGTT  692

seq1  TTGTTTTAGTCAAAGAGACATGCCTGTCACATGTGGCTTATTGTATGTTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAGTCAAAGAGACATGCCTGTCACATGTGGCTTATTGTATGTTT  742

seq1  CTCATCTGATTTCTTGAATCCTGGGGCAGCTTCAAGAACCAGTGTTTCAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGATTTCTTGAATCCTGGGGCAGCTTCAAGAACCAGTGTTTCAG  792

seq1  AAGTATCTTGCTTTCTGGAAATATCTCCATTTTCTCCTATATATTAAATG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTTGCTTTCTGGAAATATCTCCATTTTCTCCTATATATTAAATG  842

seq1  GGATGTCTCAGTCTTAAAATTATTGTGGTGACTCTTTGCCACAATAGGGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCTCAGTCTTAAAATTATTGTGGTGACTCTTTGCCACAATAGGGA  892

seq1  GATGTAACCAAATTTCTGTCTCCCTCCTTCAAGGACACAAGTGACAAACC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAACCAAATTTCTGTCTCCCTCCTTCAAGGACACAAGTGACAAACC  942

seq1  AAAATCAATCCTACCAGAGGCCAAATTGGGGAATTGGGGCATTTATTAGG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAATCCTACCAGAGGCCAAATTGGGGAATTGGGGCATTTATTAGG  992

seq1  CTTCTTTACAAAGCATGGGGGATTGGTTACTTGAAGGATTGTGAGCAACC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTACAAAGCATGGGGGATTGGTTACTTGAAGGATTGTGAGCAACC  1042

seq1  TCCACGTGTCTACATGGTGACTTTTCACAACTGTGCACAGCTGTAATTCC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGTGTCTACATGGTGACTTTTCACAACTGTGCACAGCTGTAATTCC  1092

seq1  CACTTCCGTTACTCTTGAATTC  1110
      ||||||||||||||||||||||
seq2  CACTTCCGTTACTCTTGAATTC  1114