BAC Information

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BAC

Clone NameB6Ng01-343A11
Chromosome14 (Build37)17 (Build37)
Map Location 75,665,975 - 75,666,91547,260,398 - 47,261,545
singlet/doubletsingletsinglet
Overlap geneCpb2
Upstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1
Downstream geneZc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343A11.bB6Ng01-343A11.g
ACCGA125923GA125924
length1,0711,155
definitionB6Ng01-343A11.b B6Ng01-343A11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,665,975 - 75,666,915)(47,260,398 - 47,261,545)
sequence
gaattctcttcttgccacccacagtaagctagaaattggcacagatcgga
aaaggggaagggaaagaggggtgggctgggagaggaagaaaaaagagaaa
gaagtggaaaagaggagggggaagaggattatgaatccaaacaaatatgc
cgagtcactgaaacaagaagaaaacggagcaaatattatcatctacacca
ttctcggaaggtttcgtttcccaacctgcagttagcaatatctaaataag
aggggaagaaaaaatgaccaatgatgatcgttatctaatataatgatttg
gttatctaatcaaatagatatggatgactccatctggtcagtgtcaggaa
agtccttacttgtccaggttagttgtcttacttgatcattcattcattca
ttcattcatatctatgtacttcagtgttagggataaactgcccactgctt
ccaacactaacaacactgtgggtctgcagagcctcacactgcttgcacac
cctcaggtaagtgagagtaaaccttgatgcaaccaccaggatgcatgagt
tttctcatgtagtcattcagcttccagacatccagttttgagatgtacac
aaaacaagaaagcatcacaggtgggcatcccatgacagttcccaagacac
taatctgattaactaactcggtcgctagaggaacccagtgctcctcatct
ctgccttgagtcttgcactgaaagttcttgtccagggcagattgaacctg
agttcccaagtccacatgttacctttgagtgactgaaagtgcttaccgat
ttgcagatatgagataccaatcctataccgctacagcaaacgtattttcc
tacgagttacatttctccagagcttctctttatttttaagggagagagca
tgggagaaaacagaactacgaattggcaagtgtaaaagaaatgtgatcat
ggtcatgatggctacagcttctccaggatcacactcacttcaaggcacga
tttattcaaaaattgccatccatccaaggcatctggtccttctctcttta
ttttgatattgttaatctacc
gaattctttgagagcaaatatacaatcagcaagcgctgcagagggaaagg
gtgacggttctgggtggccttggaaagccctcattggctcaccctcaggt
ggatgacaaaccagcttgggatcttgtgagcctgggcaaaggtgtgtgtg
tgtgtgtgtgcgcgcgcgcacgcgtgcagaaactataaactccaaccatg
cacagactgtgcacagcaggtgttctgagagctctgttgacaaaggcatg
tgaaggatgaacggaacagttgacagtactcatacagaaacctcgcttgg
gcccaccgtgtgcgtattcagcacaatcagggttcacacctctcatagac
ggtggccggaagactgaaacagaaaccaaaggcttcgggcaagtcaagga
tggtggggtcataggtcattctccgtgtggcatgagtttggcactgcatc
ggcaactggagagtgtactgaagactagtcaaggcagatcattctgcacg
ggacacacccatccgccgtgttctctgttcttactcctcggatttcaggg
ttcgcagcggaatagcagtcttctagctcctccgtccaaaaccacgcttt
ccttgaagagtaattcttttacattagggctgttaggatttttctctgtt
tgttttccttttttttttagacctggaaacttccattttgtgggcaagat
agtacaggaggatttgactttctttgttaaatgactaaaccaacacaaat
atatgaggggccagcaaaatggcatacagcgcttgctgctaagtctacat
gcagagttcaaatcccaggacccacgtggaagaaggaaaggactgacacc
cactgctgccctctgacctttgcacatgtgccatggcatgcatagatgca
cacccatacaccaagtcaataagggagtaaataaatatgtgtagtgaagg
gctgcacagatggctccacacttaaaagcactgtctgttctttcaaagtc
ctgagttcagttcccagcaaccacatgatggctctcatcatccagaactg
ggattctggatgccctcttcttggcatgccagcgtacacgcttgaataga
acggcctcagtataccttaaaataataacgaatctttttttttaaaaata
cacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_75665975_75666915
seq2: B6Ng01-343A11.b_171_1113 (reverse)

seq1  GTAG-TTAACAATATCCAAATAAAGGAGAG-AGGAACAG-TGCCTTGGAT  47
      |||| ||||||||||| ||||||| ||||| |||| ||| ||||||||||
seq2  GTAGATTAACAATATCAAAATAAA-GAGAGAAGGACCAGATGCCTTGGAT  49

seq1  GGGTGGC-ATTTTTGAATAAATCGTG-CTTG-AGTGAGTGTGAATCCTGG  94
      || |||| |||||||||||||||||| |||| |||||||||| |||||||
seq2  GGATGGCAATTTTTGAATAAATCGTGCCTTGAAGTGAGTGTG-ATCCTGG  98

seq1  AGAAGCTGTAGGCATCATGACCATGATCACATTTCCTTTTACACTTGCCA  144
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  AGAAGCTGTAGCCATCATGACCATGATCACATTT-CTTTTACACTTGCCA  147

seq1  ATTCCGTAGTTCTGTTTTCTCCCATGCTCTCTCCCTTAAAAATTAAAGAG  194
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATT-CGTAGTTCTGTTTTCTCCCATGCTCTCTCCCTTAAAAA-TAAAGAG  195

seq1  AAGCTCTGGAGAAATGTAACTCGTAGGAAAATACGTTTGCTGTAGCGGTA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGGAGAAATGTAACTCGTAGGAAAATACGTTTGCTGTAGCGGTA  245

seq1  TAGGATTGGTATCTCATATCTGCAAATCGGTAAGCACTTTCAGTCACTCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTGGTATCTCATATCTGCAAATCGGTAAGCACTTTCAGTCACTCA  295

seq1  AAGGTAACATGTGGACTTGGGAACTCAGGTTCAATCTGCCCTGGACAAGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAACATGTGGACTTGGGAACTCAGGTTCAATCTGCCCTGGACAAGA  345

seq1  ACTTTCAGTGC-AGACTCAAGGCAGAGATGAGGAGCACTGGGTTCCTCTA  393
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGTGCAAGACTCAAGGCAGAGATGAGGAGCACTGGGTTCCTCTA  395

seq1  GCGACCGAGTTAGTTAATCAGATTAGTGTCTTGGGAACTGTCATGGGATG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACCGAGTTAGTTAATCAGATTAGTGTCTTGGGAACTGTCATGGGATG  445

seq1  CCCACCTGTGATGCTTTCTTGTTTTGTGTACATCTCAAAACTGGATGTCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTGTGATGCTTTCTTGTTTTGTGTACATCTCAAAACTGGATGTCT  495

seq1  GGAAGCTGAATGACTACATGAGAAAACTCATGCATCCTGGTGGTTGCATC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGAATGACTACATGAGAAAACTCATGCATCCTGGTGGTTGCATC  545

seq1  AAGGTTTACTCTCACTTACCTGAGGGTGTGCAAGCAGTGTGAGGCTCTGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTACTCTCACTTACCTGAGGGTGTGCAAGCAGTGTGAGGCTCTGC  595

seq1  AGACCCACAGTGTTGTTAGTGTTGGAAGCAGTGGGCAGTTTATCCCTAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCACAGTGTTGTTAGTGTTGGAAGCAGTGGGCAGTTTATCCCTAAC  645

seq1  ACTGAAGTACATAGATATGAATGAATGAATGAATGAATGATCAAGTAAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTACATAGATATGAATGAATGAATGAATGAATGATCAAGTAAGA  695

seq1  CAACTAACCTGGACAAGTAAGGACTTTCCTGACACTGACCAGATGGAGTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAACCTGGACAAGTAAGGACTTTCCTGACACTGACCAGATGGAGTC  745

seq1  ATCCATATCTATTTGATTAGATAACCAAATCATTATATTAGATAACGATC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATATCTATTTGATTAGATAACCAAATCATTATATTAGATAACGATC  795

seq1  ATCATTGGTCATTTTTTCTTCCCCTCTTATTTAGATATTGCTAACTGCAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGGTCATTTTTTCTTCCCCTCTTATTTAGATATTGCTAACTGCAG  845

seq1  GTTGGGAAACGAAACCTTCCGAGAATGGTGTAGATGATAATATTTGCTCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGAAACGAAACCTTCCGAGAATGGTGTAGATGATAATATTTGCTCC  895

seq1  GTTTTCTTCTTGTTTCAGTGACTCGGCATATTTGTTTGGATTTATAAT  941
      |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTTTTCTTCTTGTTTCAGTGACTCGGCATATTTGTTTGGATTCATAAT  943

seq1: chr17_47260398_47261545
seq2: B6Ng01-343A11.g_67_1221

seq1  GAATTCTTTGAGAGCAAATATACAATCAGCAAGCGCTGCAGAGGGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGAGCAAATATACAATCAGCAAGCGCTGCAGAGGGAAAGG  50

seq1  GTGACGGTTCTGGGTGGCCTTGGAAAGCCCTCATTGGCTCACCCTCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGGTTCTGGGTGGCCTTGGAAAGCCCTCATTGGCTCACCCTCAGGT  100

seq1  GGATGACAAACCAGCTTGGGATCTTGTGAGCCTGGGCAAAGGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACAAACCAGCTTGGGATCTTGTGAGCCTGGGCAAAGGTGTGTGTG  150

seq1  TGTGTGTGTGCGCGCGCGCACGCGTGCAGAAACTATAAACTCCAACCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGCGCGCGCGCACGCGTGCAGAAACTATAAACTCCAACCATG  200

seq1  CACAGACTGTGCACAGCAGGTGTTCTGAGAGCTCTGTTGACAAAGGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTGTGCACAGCAGGTGTTCTGAGAGCTCTGTTGACAAAGGCATG  250

seq1  TGAAGGATGAACGGAACAGTTGACAGTACTCATACAGAAACCTCGCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATGAACGGAACAGTTGACAGTACTCATACAGAAACCTCGCTTGG  300

seq1  GCCCACCGTGTGCGTATTCAGCACAATCAGGGTTCACACCTCTCATAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCGTGTGCGTATTCAGCACAATCAGGGTTCACACCTCTCATAGAC  350

seq1  GGTGGCCGGAAGACTGAAACAGAAACCAAAGGCTTCGGGCAAGTCAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCGGAAGACTGAAACAGAAACCAAAGGCTTCGGGCAAGTCAAGGA  400

seq1  TGGTGGGGTCATAGGTCATTCTCCGTGTGGCATGAGTTTGGCACTGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGGTCATAGGTCATTCTCCGTGTGGCATGAGTTTGGCACTGCATC  450

seq1  GGCAACTGGAGAGTGTACTGAAGACTAGTCAAGGCAGATCATTCTGCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTGGAGAGTGTACTGAAGACTAGTCAAGGCAGATCATTCTGCACG  500

seq1  GGACACACCCATCCGCCGTGTTCTCTGTTCTTACTCCTCGGATTTCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACCCATCCGCCGTGTTCTCTGTTCTTACTCCTCGGATTTCAGGG  550

seq1  TTCGCAGCGGAATAGCAGTCTTCTAGCTCCTCCGTCCAAAACCACGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCAGCGGAATAGCAGTCTTCTAGCTCCTCCGTCCAAAACCACGCTTT  600

seq1  CCTTGAAGAGTAATTCTTTTACATTAGGGCTGTTAGTATTTTTCTCTGTT  650
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCTTGAAGAGTAATTCTTTTACATTAGGGCTGTTAGGATTTTTCTCTGTT  650

seq1  TGTTTTCCTTTTTTTTTTAGACCTGGAAACTTCCATTTTGTGGGCAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCTTTTTTTTTTAGACCTGGAAACTTCCATTTTGTGGGCAAGAT  700

seq1  AGTACAGGAGGATTTGACTTTCTTTGTTAAATGACTAAACCAACACAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGGAGGATTTGACTTTCTTTGTTAAATGACTAAACCAACACAAAT  750

seq1  ATATGAGGGGCCAGCAAAATGGCATTCAGGCGCTTGCTGCTAAGCCTACA  800
      ||||||||||||||||||||||||| || ||||||||||||||| |||||
seq2  ATATGAGGGGCCAGCAAAATGGCATACA-GCGCTTGCTGCTAAGTCTACA  799

seq1  TGCAGAGTTCAAATCCCAGGACCCACGTGGTAGAAGGAAAGGACTGACAC  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGCAGAGTTCAAATCCCAGGACCCACGTGGAAGAAGGAAAGGACTGACAC  849

seq1  CCACTGCTGCCCTCTGACCTTTGCACATGTGCCATGGCATGCATAGATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCTGCCCTCTGACCTTTGCACATGTGCCATGGCATGCATAGATGC  899

seq1  ACACCCATACACCAAGTCAATAAGGGAGTAAATAAATATGTGTAGTGAGG  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACACCCATACACCAAGTCAATAAGGGAGTAAATAAATATGTGTAGTGAAG  949

seq1  GGCTGCACAGATGGCTCCACACTTAAGAGCACTGTCTGTTCTTTCAGAGG  1000
      |||||||||||||||||||||||||| ||||||||||||||||||| | |
seq2  GGCTGCACAGATGGCTCCACACTTAAAAGCACTGTCTGTTCTTTCA-AAG  998

seq1  TCCTGAGTTCAGTTCCCAGCAACCACATGATGGCTCTCATCCATCCAG-A  1049
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  TCCTGAGTTCAGTTCCCAGCAACCACATGATGGCTCTCAT-CATCCAGAA  1047

seq1  CTGGGA-TCT-GATGCCCTCTTC-TGGCATGCAGGCGTACACGCT--GAT  1094
      |||||| ||| |||||||||||| ||||||||  |||||||||||   ||
seq2  CTGGGATTCTGGATGCCCTCTTCTTGGCATGCCAGCGTACACGCTTGAAT  1097

seq1  AGAGCG--CTCA-TATACATAAAATAAATAAACAAATC--TTTTTTTAAA  1139
      ||| ||  |||| ||||| | |||  ||| ||| ||||  ||||||||||
seq2  AGAACGGCCTCAGTATACCTTAAAATAAT-AACGAATCTTTTTTTTTAAA  1146

seq1  AATACACGT  1148
      |||||||||
seq2  AATACACGT  1155