BAC Information

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BAC

Clone NameB6Ng01-343G13
Chromosome14 (Build37)
Map Location 37,298,414 - 37,299,624
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid1, 4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
Downstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343G13.bB6Ng01-343G13.g
ACCGA126195GA126196
length1,1871,208
definitionB6Ng01-343G13.b B6Ng01-343G13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaataagagagaaaaaagatgtgtaagagcagagtagcttaggga
gcagctgtttcaataaagcaagagattaataaatagtaatcttacacaag
atccatgaactatgcccctgaaaatagtggtttggtgtctaagatgtaac
aaaacaaaaggaagttggattttattttatcacaatatccaggtagtgtt
catgactattacctggaaaaaaagaaccaacaggatttcagagacaaaga
ctctttccaaaggtaatgattctgatttttaggttccatgccagaaggtc
ttctagaggggacactaaattaggaatgggatcagtaatcaccttatgag
ctgctgttaatagaaacagccctgtggtcagcagatattccaaactgctc
tggtccttctggtcaatccctgtcccctgtggacagtactcaaacagcgt
ccaccctgttatctgtgaatgatgtcactttatgataattcacagactcg
tttgtttcagcacatactgatattgatcagtttccattgtgttacaaatc
cctagttagtacttactataacccttcctcatccccctctttaaaacctg
ggggatttatgaaagtttaacatgcatttgattctccagtgtgtgtagga
ggtttatgatgaaaggcatgatgggatcaaattcctctccttggctgaaa
tgttcagtagtaccaggaaccctctgtgcatctgtctctaggactcatga
gtgacttctgtatgtaacatgagattcccacattcctgctgaaataccca
cagaaggaacccacatcaggtagcttcctatttgctgcactgatagaatc
tggtcatttctgttttgtctgctttgagtcttcccatgggcagggtcttg
ttcaggttgtatcttctgagtcctgtaccaatttttgtcaagaggaattt
aatattctgattgtgtatattcatgtcataagcctgtccttggacaagga
agataaagtaattgtaccaaagaaaatactaggtactattatcaaagaga
ctggcttcgggaagccaataatgtatatgttagtgatttctgaaaacaga
gacttttagtcaacagctatttccaggaagttaattcgtagaatgcatga
ctcgaattccttcagtcggccagttccaatgctgaca
gaattctctgtttagctctgtatgagcccatttttaattggaatatatgg
tttgttggagtctgaattcttgagatctttatatgttttggctattagcc
ctctgttggttgtaaagatagtgaagtcttttaacccaaactataggcca
ctgttttgtcttactgacagtgtcctttgcctttagaagaattaaagttt
atgagatcctatttattaattgttgatcttagagcctgagccaatgatgt
tcttttcaagaaactatctcctgaaccaatgtgttcaaagctatttccta
ttttttctcctattagatatagtgtattcggctttatgttgaagtccttg
acttccctggattaagtttcctgcagggtgatgagtatatatctacttgc
attcctctatatttagatatctagttagactagcaccatttgctaaagat
gctttcttttatccattgtatggttttggcttctttgtaaaaagtcaagt
gtccaaagatgtgtgggtttatttctcagtcttcaattctattccattaa
tcaacctgcccattttttcatttgtatgaaggagggctactgatttttta
gttaattctatatcaagccacattgctaatgttgtttattagctgtagga
gttctctggtataaatttgaagatatcttacatatactattatatcatct
ctgaatagtgacaccatgacttcttccttcccaatttgtatctcctttat
ctccctttattgtcttattgcattagctagaacatcaagtactatattgt
atagataaagagttgtcagctgtgtcctgtccctgattttattggggttg
cttcaatttctctcacttaatttgatgtttgctattgatttactgtatgt
ggctttgggttgtttaggtatgtgccttgaattccctctttcaagatctg
gaacatgaagggaggggtggttgctggatttgtcaaagcatttacagcat
ctaatgtgttaatcatgtgatgatttttttttttgtaaagagtagaatac
attgatggatttttcaatattgaaccattcctaggaggagcctacctgat
cctgatataaatatgtttggatgtgtcccctgaatccagtttgccgatta
tggacatttagtgtccaaattctaaacgaattagccgtggaaggtctcct
cctcctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_37298414_37299624
seq2: B6Ng01-343G13.b_49_1235 (reverse)

seq1  TGTCAAGCATTGGAAAACATTGACCAGAACTGAAAGGGAATATTTGAAGT  50
      |||| |||||||||    | || ||   ||||||  ||||   ||  |||
seq2  TGTC-AGCATTGGA----ACTGGCC--GACTGAA--GGAA---TTCGAGT  38

seq1  CATGCCATTTCTACGAATTTAACTTTCTGGGGATAGCTGTTTGGACTTAA  100
      |||||   ||||||||| ||||||| ||||  |||||||||  ||| |||
seq2  CATGC--ATTCTACGAA-TTAACTTCCTGGAAATAGCTGTT--GAC-TAA  82

seq1  AAGTCTCCTGTTCTCAAGGAAATCACTAACATATACATATTTGGCTTCCC  150
      |||||| ||||| |||  ||||||||||||||||||||  ||||||||||
seq2  AAGTCT-CTGTTTTCA--GAAATCACTAACATATACATTATTGGCTTCCC  129

seq1  GAAAGCCAGTCTCTTTTGATAATAGTACCTAGTATTTTCTTTGGTACAAT  200
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  G-AAGCCAGTCTC-TTTGATAATAGTACCTAGTATTTTCTTTGGTACAAT  177

seq1  TACTTTATCCTTCCTTGTCCAAGGACAGGCTTATGACATGAATATACACA  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAT-CTTCCTTGTCCAAGGACAGGCTTATGACATGAATATACACA  226

seq1  ATCAGAATATTAAATTCCTCTTGACAAAAATTGGTACAGGACTCAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAATATTAAATTCCTCTTGACAAAAATTGGTACAGGACTCAGAAGA  276

seq1  TACAACCTGAACAAGACCCTGCCCATGGGAAGACTCAAAGCAGACAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCTGAACAAGACCCTGCCCATGGGAAGACTCAAAGCAGACAAAAC  326

seq1  AGAAATGACCAGATTCTATCAGTGCAGCAAATAGGAAGCTACCTGATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGACCAGATTCTATCAGTGCAGCAAATAGGAAGCTACCTGATGTG  376

seq1  GGTTCCTTCTGTGGGTATTTCAGCAGGAATGTGGGAATCTCATGTTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTCTGTGGGTATTTCAGCAGGAATGTGGGAATCTCATGTTACAT  426

seq1  ACAGAAGTCACTCATGAGTCCTAGAGACAGATGCACAGAGGGTTCCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTCACTCATGAGTCCTAGAGACAGATGCACAGAGGGTTCCTGGT  476

seq1  ACTACTGAACATTTCAGCCAAGGAGAGGAATTTGATCCCATCATGCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGAACATTTCAGCCAAGGAGAGGAATTTGATCCCATCATGCCTTT  526

seq1  CATCATAAACCTCCTACACACACTGGAGAATCAAATGCATGTTAAACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAAACCTCCTACACACACTGGAGAATCAAATGCATGTTAAACTTT  576

seq1  CATAAATCCCCCAGGTTTTAAAGAGGGGGATGAGGAAGGGTTATAGTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATCCCCCAGGTTTTAAAGAGGGGGATGAGGAAGGGTTATAGTAAG  626

seq1  TACTAACTAGGGATTTGTAACACAATGGAAACTGATCAATATCAGTATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACTAGGGATTTGTAACACAATGGAAACTGATCAATATCAGTATGT  676

seq1  GCTGAAACAAACGAGTCTGTGAATTATCATAAAGTGACATCATTCACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACAAACGAGTCTGTGAATTATCATAAAGTGACATCATTCACAGA  726

seq1  TAACAGGGTGGACGCTGTTTGAGTACTGTCCACAGGGGACAGGGATTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGGTGGACGCTGTTTGAGTACTGTCCACAGGGGACAGGGATTGAC  776

seq1  CAGAAGGACCAGAGCAGTTTGGAATATCTGCTGACCACAGGGCTGTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGACCAGAGCAGTTTGGAATATCTGCTGACCACAGGGCTGTTTCT  826

seq1  ATTAACAGCAGCTCATAAGGTGATTACTGATCCCATTCCTAATTTAGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAGCAGCTCATAAGGTGATTACTGATCCCATTCCTAATTTAGTGT  876

seq1  CCCCTCTAGAAGACCTTCTGGCATGGAACCTAAAAATCAGAATCATTACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTAGAAGACCTTCTGGCATGGAACCTAAAAATCAGAATCATTACC  926

seq1  TTTGGAAAGAGTCTTTGTCTCTGAAATCCTGTTGGTTCTTTTTTTCCAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAGAGTCTTTGTCTCTGAAATCCTGTTGGTTCTTTTTTTCCAGG  976

seq1  TAATAGTCATGAACACTACCTGGATATTGTGATAAAATAAAATCCAACTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTCATGAACACTACCTGGATATTGTGATAAAATAAAATCCAACTT  1026

seq1  CCTTTTGTTTTGTTACATCTTAGACACCAAACCACTATTTTCAGGGGCAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTTTTGTTACATCTTAGACACCAAACCACTATTTTCAGGGGCAT  1076

seq1  AGTTCATGGATCTTGTGTAAGATTACTATTTATTAATCTCTTGCTTTATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATGGATCTTGTGTAAGATTACTATTTATTAATCTCTTGCTTTATT  1126

seq1  GAAACAGCTGCTCCCTAAGCTACTCTGCTCTTACACATCTTTTTTCTCTC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCTGCTCCCTAAGCTACTCTGCTCTTACACATCTTTTTTCTCTC  1176

seq1  TTATTGAATTC  1211
      |||||||||||
seq2  TTATTGAATTC  1187