BAC Information

Click to search

BAC

Clone NameB6Ng01-343I09
Chromosome14 (Build37)
Map Location 54,704,364 - 54,848,358
singlet/doubletdoublet
Overlap geneA630038E17Rik, EG626545
Upstream geneEG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
Downstream geneDad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343I09.bB6Ng01-343I09.g
ACCGA126277GA126278
length1,2171,154
definitionB6Ng01-343I09.b B6Ng01-343I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,704,364 - 54,705,575)(54,847,179 - 54,848,358)
sequence
gaattcccactttgattttctgccttgtgaaatagtgagacctccctctt
ctcaaatacgcaggcccctcacagcaaacattagctccacaagtcttcat
ccagcctaggttgaattgtttacactcccagagttgccttcaatcagagc
aaagtgtttccctgcgagctatgaaaatactcagctacaaaccgagtcac
ctgggtcccacttcccgcttccctgaagctgcctctgtaagtgctctgaa
ggaaacagcattcatatctatcagccttgccgtgtccctctctgccttag
gaaaaaccctgatatgttaccaacgctttaaggtcaacagtttgaattga
acattccctgcttgcttttcccacaaattggtggctagaaaataagacac
cttcccttcatattaaaaagcccaggtggaaaggtaagacaccgcttggg
acacgctgctctaatgacaggagagagcaagggaagagcaaccagagctg
aacaggctcccctctgacacatcaaccacaaccactcacactcactagcc
aaggcccttctggccaaactcaaaagcaattggttagagaccaagaccct
ccccacagaaggtatagcaatatgcagagcagggagggggccttcataca
gggaaggaaacaccaaatcctttgagataacagaccactgtatctctgag
tcggcccaggagttttgtcccgatgttgactggtaaaaagcttgatagga
ttttgtttttcttagaattcttgaattagcaagttcttcttcctatgcca
ccatccctccagatggcaataatagttgcacaattaaaaataattctgtg
gttgagaaattttagcaaagaataaatattagcaatgtccctgaatactc
ataatttctcttgccacattaaatgttctgaaaaacactactgctgtacc
tacttaagccaggattggcatcacagaacttttatttatttctttatttt
gtactgacccaacaactaatgtctcatgagaccttagtgggcgagtacta
aattccaaaggattggtgggaaaaaatcaatcagaacaattactagtgtt
tgttcaatttctgagcatctagactgaagaaacatctaatggatgttgaa
agagttaaccaaagagggcccaaggtctagacatgcatctaatgaaggta
ttcattcttctgggaga
gaattccaaacccttgttctcctttcccatcagtcctttctccctagaga
cacctagcatgtgagtacctgttatgggcgacccctttggccatttctta
aactttagttgtatggagtcagagtccctgaaacctgacacagtgtctgc
cctttaacaggtatcccgctggaagaaagccttcgtttctaaactacctg
agagaatgttggtacaaagaggagaactgaggctgcgggtttacaggcta
cagagtgaagtcatggatcctgggcctgccgggccccatattccatctcc
tggcttccaacagggtagtttctttctgggtttctcttgtagctaggtct
cctaaacctgggtaggcagtgccccctgctgcctgaaggcctgaccctag
actctttgcaggcagagaggatcacacaagtctggagtccagtgactggc
acagggcaggaccctgtgaaacagaagccacttgtcattttattttcctt
tggaaagagtttttccgtaggatgcagggattttctttatcccgaataaa
cacgccgagggagaaagccttttggtggagtactgctgcccccgtgtggc
taccttaagacactacaacagagtgggactcccaagacgaaagtttttca
ggtttcaggttctgcgacttcctaggaccctgagagacagatgtccacta
gggttatctcttgacacttaaatttcctcctggagtggaaatgagagcga
atggggcttcttgtggaaggtatctgttggggaacgagccttagctgtgt
gtgtaggcagctgcctctttcacaacctgtccagcacaagctggactgga
catagactttctcccttgaactaagtatatagacttgtctaatttgaggg
caatagaggtcaggggagggggacttcttgggagtggagccgcagtgcct
ccccagccggctgctgtgatgggtgtacacagactgcaagccccacccat
gtgctctcgtggcttcttttctgcactgtggtggctgcgtgtacgactag
cctactcttctggcacgtgcccggagagatcttatctctaactctgtatt
ttactcctatccaggatggcttctgcgggaagcttcatgggggggacctg
tttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_54704364_54705575
seq2: B6Ng01-343I09.b_49_1265

seq1  GAATTCCCACTTTGATTTTCTGCCTTGTGAAATAGTGAGACCTCCCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTTTGATTTTCTGCCTTGTGAAATAGTGAGACCTCCCTCTT  50

seq1  CTCAAATACGCAGGCCCCTCACAGCAAACATTAGCTCCACAAGTCTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATACGCAGGCCCCTCACAGCAAACATTAGCTCCACAAGTCTTCAT  100

seq1  CCAGCCTAGGTTGAATTGTTTACACTCCCAGAGTTGCCTTCAATCAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTAGGTTGAATTGTTTACACTCCCAGAGTTGCCTTCAATCAGAGC  150

seq1  AAAGTGTTTCCCTGCGAGCTATGAAAATACTCAGCTACAAACCGAGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTTCCCTGCGAGCTATGAAAATACTCAGCTACAAACCGAGTCAC  200

seq1  CTGGGTCCCACTTCCCGCTTCCCTGAAGCTGCCTCTGTAAGTGCTCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCCACTTCCCGCTTCCCTGAAGCTGCCTCTGTAAGTGCTCTGAA  250

seq1  GGAAACAGCATTCATATCTATCAGCCTTGCCGTGTCCCTCTCTGCCTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAGCATTCATATCTATCAGCCTTGCCGTGTCCCTCTCTGCCTTAG  300

seq1  GAAAAACCCTGATATGTTACCAACGCTTTAAGGTCAACAGTTTGAATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCCTGATATGTTACCAACGCTTTAAGGTCAACAGTTTGAATTGA  350

seq1  ACATTCCCTGCTTGCTTTTCCCACAAATTGGTGGCTAGAAAATAAGACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCCTGCTTGCTTTTCCCACAAATTGGTGGCTAGAAAATAAGACAC  400

seq1  CTTCCCTTCATATTAAAAAGCCCAGGTGGAAAGGTAAGACACCGCTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTCATATTAAAAAGCCCAGGTGGAAAGGTAAGACACCGCTTGGG  450

seq1  ACACGCTGCTCTAATGACAGGAGAGAGCAAGGGAAGAGCAACCAGAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCTGCTCTAATGACAGGAGAGAGCAAGGGAAGAGCAACCAGAGCTG  500

seq1  AACAGGCTCCCCTCTGACACATCAACCACAACCACTCACACTCACTAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTCCCCTCTGACACATCAACCACAACCACTCACACTCACTAGCC  550

seq1  AAGGCCCTTCTGGCCAAACTCAAAAGCAATTGGTTAGAGACCAAGACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCTTCTGGCCAAACTCAAAAGCAATTGGTTAGAGACCAAGACCCT  600

seq1  CCCCACAGAAGGTATAGCAATATGCAGAGCAGGGAGGGGGCCTTCATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGAAGGTATAGCAATATGCAGAGCAGGGAGGGGGCCTTCATACA  650

seq1  GGGAAGGAAACACCAAATCCTTTGAGATAACAGACCACTGTATCTCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAAACACCAAATCCTTTGAGATAACAGACCACTGTATCTCTGAG  700

seq1  TCGGCCCAGGAGTTTTGTCCCGATGTTGACTGGTAAAAAGCTTGATAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCCAGGAGTTTTGTCCCGATGTTGACTGGTAAAAAGCTTGATAGGA  750

seq1  TTTTGTTTTTCTTAGAATTCTTGAATTAGCAAGTTCTTCTTCCTATGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTCTTAGAATTCTTGAATTAGCAAGTTCTTCTTCCTATGCCA  800

seq1  CCATCCCTCCAGATGGCAATAATAGTTGCACAATTAAAAATAATTCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTCCAGATGGCAATAATAGTTGCACAATTAAAAATAATTCTGTG  850

seq1  GTTGAGAAATTTTAGCAAAGAATAAATATTAGCAATGTCCCTGAATACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAAATTTTAGCAAAGAATAAATATTAGCAATGTCCCTGAATACTC  900

seq1  ATAATTTCTCTTGCCACATTAAATGTTCTGAAAAACACTACTGCTGTACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCTCTTGCCACATTAAATGTTCTGAAAAACACTACTGCTGTACC  950

seq1  TACTTAAGCCAGGATTGGCATCACAGAACTTTTATTTATTTCTTTATTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAGCCAGGATTGGCATCACAGAACTTTTATTTATTTCTTTATTTT  1000

seq1  GTACTGACCCAACAACTAATGTCTCATGAGACCTTAGT-GGCGAGTACTA  1049
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTACTGACCCAACAACTAATGTCTCATGAGACCTTAGTGGGCGAGTACTA  1050

seq1  AATTCCCAAAGGATT-GTGGGAAAAAATCAATCAGACAAATTACTAGTGT  1098
      |||| |||||||||| ||||||||||||||||||||  ||||||||||||
seq2  AATT-CCAAAGGATTGGTGGGAAAAAATCAATCAGAACAATTACTAGTGT  1099

seq1  TTGTTC-ATTTCTGAGCATCTAGACTGAAG-AACATCTAAT-GATGTTGA  1145
      |||||| ||||||||||||||||||||||| |||||||||| ||||||| 
seq2  TTGTTCAATTTCTGAGCATCTAGACTGAAGAAACATCTAATGGATGTTG-  1148

seq1  AAAGAGTT-ACACAAGAGGCCAACAGGTCTAGACAGGCCTCTAAATGAA-  1193
      |||||||| ||  |||||| |   ||||||||||| || ||| |||||| 
seq2  AAAGAGTTAACCAAAGAGGGCCCAAGGTCTAGACATGCATCT-AATGAAG  1197

seq1  GTATTCATTC-TCTGGGAGA  1212
      |||||||||| |||||||||
seq2  GTATTCATTCTTCTGGGAGA  1217

seq1: chr14_54847179_54848358
seq2: B6Ng01-343I09.g_69_1222 (reverse)

seq1  CAAACAGGT-CCCCCTTTGAAGCTCTCCCGCAGAAGCCACATCCTCTGGA  49
      ||||||||| |||||  ||||||| ||||||||||||  ||||  |||| 
seq2  CAAACAGGTCCCCCCCATGAAGCT-TCCCGCAGAAGC--CATC--CTGG-  44

seq1  AAGAGGAGTTAAAAATACAGAGTTAGAGATAAGATCTCTCCGGGCCACGT  99
       | ||||||  ||||||||||||||||||||||||||||||||| |||||
seq2  -ATAGGAGT--AAAATACAGAGTTAGAGATAAGATCTCTCCGGG-CACGT  90

seq1  GCCCAGAAGAGGTAGGCTGGGCCGTTACACCGCAGCCCAACCACAGGTGC  149
      | |||||||| ||||||| | |   |||| |||||||  |||||| ||||
seq2  G-CCAGAAGA-GTAGGCTAGTC--GTACA-CGCAGCC--ACCACA-GTGC  132

seq1  AGAAAAGAAGGCCACGGAGAGCACATTGGGTGGGGCTTGCAGGTCTTGGT  199
      ||||||||| ||||| ||||||||| ||||||||||||||| ||||  ||
seq2  AGAAAAGAA-GCCAC-GAGAGCACA-TGGGTGGGGCTTGCA-GTCTGTGT  178

seq1  GGTAACACCCATTCACAGCAGCCGGCTGGGGAGGCACTGCGGCTCCACTC  249
          ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ----ACACCCA-TCACAGCAGCCGGCTGGGGAGGCACTGCGGCTCCACTC  223

seq1  CCAAGAAGTCCCCCTCCCCTGACCTCTATTGCCCTCAAATTAGACAAGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGTCCCCCTCCCCTGACCTCTATTGCCCTCAAATTAGACAAGTC  273

seq1  TATATACTTAGTTCAAGGGAGAAAGTCTATGTCCAGTCCAGCTTGTGCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTTAGTTCAAGGGAGAAAGTCTATGTCCAGTCCAGCTTGTGCTG  323

seq1  GACAGGTTGTGAAAGAGGCAGCTGCCTACACACACAGCTAAGGCTCGTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTTGTGAAAGAGGCAGCTGCCTACACACACAGCTAAGGCTCGTTC  373

seq1  CCCAACAGATACCTTCCACAAGAAGCCCCATTCGCTCTCATTTCCACTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGATACCTTCCACAAGAAGCCCCATTCGCTCTCATTTCCACTCC  423

seq1  AGGAGGAAATTTAAGTGTCAAGAGATAACCCTAGTGGACATCTGTCTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAATTTAAGTGTCAAGAGATAACCCTAGTGGACATCTGTCTCTC  473

seq1  AGGGTCCTAGGAAGTCGCAGAACCTGAAACCTGAAAAACTTTCGTCTTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTAGGAAGTCGCAGAACCTGAAACCTGAAAAACTTTCGTCTTGG  523

seq1  GAGTCCCACTCTGTTGTAGTGTCTTAAGGTAGCCACACGGGGGCAGCAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCACTCTGTTGTAGTGTCTTAAGGTAGCCACACGGGGGCAGCAGT  573

seq1  ACTCCACCAAAAGGCTTTCTCCCTCGGCGTGTTTATTCGGGATAAAGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACCAAAAGGCTTTCTCCCTCGGCGTGTTTATTCGGGATAAAGAAA  623

seq1  ATCCCTGCATCCTACGGAAAAACTCTTTCCAAAGGAAAATAAAATGACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGCATCCTACGGAAAAACTCTTTCCAAAGGAAAATAAAATGACAA  673

seq1  GTGGCTTCTGTTTCACAGGGTCCTGCCCTGTGCCAGTCACTGGACTCCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTCTGTTTCACAGGGTCCTGCCCTGTGCCAGTCACTGGACTCCAG  723

seq1  ACTTGTGTGATCCTCTCTGCCTGCAAAGAGTCTAGGGTCAGGCCTTCAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGTGATCCTCTCTGCCTGCAAAGAGTCTAGGGTCAGGCCTTCAGG  773

seq1  CAGCAGGGGGCACTGCCTACCCAGGTTTAGGAGACCTAGCTACAAGAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGGGCACTGCCTACCCAGGTTTAGGAGACCTAGCTACAAGAGAA  823

seq1  ACCCAGAAAGAAACTACCCTGTTGGAAGCCAGGAGATGGAATATGGGGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAAGAAACTACCCTGTTGGAAGCCAGGAGATGGAATATGGGGCC  873

seq1  CGGCAGGCCCAGGATCCATGACTTCACTCTGTAGCCTGTAAACCCGCAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGGCCCAGGATCCATGACTTCACTCTGTAGCCTGTAAACCCGCAGC  923

seq1  CTCAGTTCTCCTCTTTGTACCAACATTCTCTCAGGTAGTTTAGAAACGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTCTCCTCTTTGTACCAACATTCTCTCAGGTAGTTTAGAAACGAA  973

seq1  GGCTTTCTTCCAGCGGGATACCTGTTAAAGGGCAGACACTGTGTCAGGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCTTCCAGCGGGATACCTGTTAAAGGGCAGACACTGTGTCAGGTT  1023

seq1  TCAGGGACTCTGACTCCATACAACTAAAGTTTAAGAAATGGCCAAAGGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGACTCTGACTCCATACAACTAAAGTTTAAGAAATGGCCAAAGGGG  1073

seq1  TCGCCCATAACAGGTACTCACATGCTAGGTGTCTCTAGGGAGAAAGGACT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCATAACAGGTACTCACATGCTAGGTGTCTCTAGGGAGAAAGGACT  1123

seq1  GATGGGAAAGGAGAACAAGGGTTTGGAATTC  1180
      |||||||||||||||||||||||||||||||
seq2  GATGGGAAAGGAGAACAAGGGTTTGGAATTC  1154