BAC Information

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BAC

Clone NameB6Ng01-343K12
Chromosome14 (Build37)
Map Location 43,981,784 - 44,066,833
singlet/doubletdoublet
Overlap geneLOC666492, 1700001F09Rik, LOC673380
Upstream geneLOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik
Downstream geneLOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343K12.bB6Ng01-343K12.g
ACCGA126379GA126380
length1,1001,139
definitionB6Ng01-343K12.b B6Ng01-343K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,065,731 - 44,066,833)(43,981,784 - 43,982,934)
sequence
gaattccttgtacttgtcaatggaatcagttattgactgcttcatttttt
ccatatccaacattgtcttctcatgttgtgatttaatgatggtgaattca
gtgttcatcctgtggtagagcatggcccaaagaataaatcatcctctgaa
ctaagcaaccaagtatcatgtgcaaaaaggctgtatctggaattcccaag
gaaattgtatgccacatccttgctccttccaactgggtcctattggtact
gattaaacttattatcttgggcagaggacagagagccaggggaccaaatg
gagatagctgacgctcaagaaatcttaggtgagcctgaaggaatacacta
gttctgtgaaatgtttctactagattgtcccacaggctttggtccttagt
tttaaggctttttttcccctcttagttttaaggcagggataatcctttgt
tcttattgctacatgaattctcagagggcataactagtatataacggaaa
aggctttataacacttcctactccaggagaatcctatgtgacaccaagga
aaacacagggaataaagaaccctgatgatcaatttgggcctctaagggct
caacactatcattccctacaaactgtgcatcacacacatcctaagacccc
atcaaaggtcccacaaccccagatcctgaacaaaacacacacaactaact
tcacacacagaaaaaaaattaaaatgccaaataaatccaggtaggctcca
tagtctcagagtacaatgaataaaacaagagtaaagcagtaatggcctgc
agacattggattcttacacagtaaggcagctattgtgaccaggtccttcc
agctgttgacaaaaccaatcagactccaagcacctcaaggccaagtacaa
aagaggatgaccatacacacacatcacttatctcatccaacaatttaaca
actgtcaagacttcttataatgaatgtgagagatgacacactcattcatg
ggagaaaaatgtgggtcaacagagaagggcacaatacagtcaacaagata
ctggggcataatttacctgtagtcaaatcagtatcatgtcaatgtcaaga

gaattcccatagctgtgctgcaaaacaggacgtttcaggagccccttgag
ggtcataataatctaaagaactcacactattttatctgtgtagcattctg
caattgctgttattcaaaatcattttatcagagttagaatgagcctaaat
gggggttgggagaattgaggaacttcagacaggtctggtagtataaaatc
aggtaggtgtttgagaagcaaggttcagaaagtagaaaagaatttcccct
tgacccagagattccaaaaaaaaaagagtagatatacacagaatctctag
ggcacatgaggtctgtaatggtcctcagagtagtctggaagaagatgata
tcctgatgtccatcagctaaagagtgaaaatgtactatgtgatgcagccc
tttcatgaactatggctcagtgtgagataatttatgcaagtatttgacct
tcaactagttagcctcatattactcaaaatatccctgacacagttatatt
atttgaagaacattgttccattggatcctatttataatgacttcctattt
ttctgggatcatacctttggacaccaagtaggtcaggcaatgataaaggg
agcctctaatggaaggaactgtttaatttgggacaagactgaaacagtga
aggagaggctagtccaccaccaacacgtgatcctttgctggcagagaagc
ctactctacacagtctttggaacttgctaagacagattgaataatgtacc
aagaaccctggttcatgaggggaaagcatatcactgactgagctgtctat
atgctttgcccactatatacctatctcatttaagatttgttttttatgtc
tacaaaatatcctggagatttttataatagcattaactggggaatctaag
cagtttgcttaaatataagtgctagtgttatgtgaatacaaataatttgt
atatttgacagagtgctctacacaggcttagatttacagtgtgtgtatat
ctttcatgccatcactttaaaattcagttctagcatgggaatatttttca
ggtagcaattcctttctgatttaagacccatgcaggctgtgatccatgtt
gatattgcttttctctgttatttccgatataggaattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44065731_44066833
seq2: B6Ng01-343K12.b_45_1144 (reverse)

seq1  TCTTGGACATTGACATGAATACTGATTTGAACTACAGGTAAAATTATG-C  49
      |||| |||||||||||| ||||||||||| ||||||||| |||||||| |
seq2  TCTT-GACATTGACATG-ATACTGATTTG-ACTACAGGT-AAATTATGCC  46

seq1  CCAGTATCTTGTTGACTGTATTGTGCCC-TCTCTGTTGACCCACA-TTTT  97
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  CCAGTATCTTGTTGACTGTATTGTGCCCTTCTCTGTTGACCCACATTTTT  96

seq1  CTCCCATGAATGGAGTGTGTCATCTCTCACATTCATTATAAGAAGTCTTG  147
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATGAAT-GAGTGTGTCATCTCTCACATTCATTATAAGAAGTCTTG  145

seq1  ACAGTTGTTAAATTGTTGGATGAGATAAGTGATGTGTGTTGTATGGTCAT  197
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACAGTTGTTAAATTGTTGGATGAGATAAGTGATGTGTG-TGTATGGTCAT  194

seq1  CCTCTTTTGTACTTGGCCTTGAGGTGCTTGGAGTCTGATTGGTTTTGTCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTGTACTTGGCCTTGAGGTGCTTGGAGTCTGATTGGTTTTGTCA  244

seq1  ACAGCTGGAAGGACCTGGTCACAATAGCTGCCTTACTGTGTAAGAATCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGGAAGGACCTGGTCACAATAGCTGCCTTACTGTGTAAGAATCCA  294

seq1  ATGTCTGCAGGCCATTACTGCTTTACTCTTGTTTTATTCATTGTACTCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCAGGCCATTACTGCTTTACTCTTGTTTTATTCATTGTACTCTG  344

seq1  AGACTATGGAGCCTACCTGGATTTATTTGGCATTTTAATTTTTTTTCTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATGGAGCCTACCTGGATTTATTTGGCATTTTAATTTTTTTTCTGT  394

seq1  GTGTGAAGTTAGTTGTGTGTGTTTTGTTCAGGATCTGGGGTTGTGGGACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAGTTAGTTGTGTGTGTTTTGTTCAGGATCTGGGGTTGTGGGACC  444

seq1  TTTGATGGGGTCTTAGGATGTGTGTGATGCACAGTTTGTAGGGAATGATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGGGGTCTTAGGATGTGTGTGATGCACAGTTTGTAGGGAATGATA  494

seq1  GTGTTGAGCCCTTAGAGGCCCAAATTGATCATCAGGGTTCTTTATTCCCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAGCCCTTAGAGGCCCAAATTGATCATCAGGGTTCTTTATTCCCT  544

seq1  GTGTTTTCCTTGGTGTCACATAGGATTCTCCTGGAGTAGGAAGTGTTATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCCTTGGTGTCACATAGGATTCTCCTGGAGTAGGAAGTGTTATA  594

seq1  AAGCCTTTTCCGTTATATACTAGTTATGCCCTCTGAGAATTCATGTAGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTTTCCGTTATATACTAGTTATGCCCTCTGAGAATTCATGTAGCA  644

seq1  ATAAGAACAAAGGATTATCCCTGCCTTAAAACTAAGAGGGGAAAAAAAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAACAAAGGATTATCCCTGCCTTAAAACTAAGAGGGGAAAAAAAGC  694

seq1  CTTAAAACTAAGGACCAAAGCCTGTGGGACAATCTAGTAGAAACATTTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACTAAGGACCAAAGCCTGTGGGACAATCTAGTAGAAACATTTCA  744

seq1  CAGAACTAGTGTATTCCTTCAGGCTCACCTAAGATTTCTTGAGCGTCAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTAGTGTATTCCTTCAGGCTCACCTAAGATTTCTTGAGCGTCAGC  794

seq1  TATCTCCATTTGGTCCCCTGGCTCTCTGTCCTCTGCCCAAGATAATAAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCATTTGGTCCCCTGGCTCTCTGTCCTCTGCCCAAGATAATAAGT  844

seq1  TTAATCAGTACCAATAGGACCCAGTTGGAAGGAGCAAGGATGTGGCATAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAGTACCAATAGGACCCAGTTGGAAGGAGCAAGGATGTGGCATAC  894

seq1  AATTTCCTTGGGAATTCCAGATACAGCCTTTTTGCACATGATACTTGGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTTGGGAATTCCAGATACAGCCTTTTTGCACATGATACTTGGTT  944

seq1  GCTTAGTTCAGAGGATGATTTATTCTTTGGGCCATGCTCTACCACAGGAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTTCAGAGGATGATTTATTCTTTGGGCCATGCTCTACCACAGGAT  994

seq1  GAACACTGAATTCACCATCATTAAATCACAACATGAGAAGACAATGTTGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGAATTCACCATCATTAAATCACAACATGAGAAGACAATGTTGG  1044

seq1  ATATGGAAAAAATGAAGCAGTCAATAACTGATTCCATTGACAAGTACAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAAAAAATGAAGCAGTCAATAACTGATTCCATTGACAAGTACAAG  1094

seq1  GAATTC  1103
      ||||||
seq2  GAATTC  1100

seq1: chr14_43981784_43982934
seq2: B6Ng01-343K12.g_66_1204

seq1  GAATTCCCATAGCTGTGCTGCAAAACAGGACGTTTCAGGAGCCCCTTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATAGCTGTGCTGCAAAACAGGACGTTTCAGGAGCCCCTTGAG  50

seq1  GGTCATAATAATCTAAAGAACTCACACTATTTTATCTGTGTAGCATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAATAATCTAAAGAACTCACACTATTTTATCTGTGTAGCATTCTG  100

seq1  CAATTGCCGTTATTCAAAATCATTTTATCAGAGTTAGAATGAGCCTAAAT  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCTGTTATTCAAAATCATTTTATCAGAGTTAGAATGAGCCTAAAT  150

seq1  GGGGGTTGGGAGAATTGAGGAACTTCAGACAGGTCTGGTAGTATAAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTGGGAGAATTGAGGAACTTCAGACAGGTCTGGTAGTATAAAATC  200

seq1  AGGTAGGTGTTTGAGAAGCAAGGTTCAGAAAGTAGAAAAGAATTTCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGTGTTTGAGAAGCAAGGTTCAGAAAGTAGAAAAGAATTTCCCCT  250

seq1  TGACCCAGAGATTCC--AAAACAAGGAGTAGATATACACAGAGTCTCTAG  298
      |||||||||||||||  |||| || ||||||||||||||||| |||||||
seq2  TGACCCAGAGATTCCAAAAAAAAAAGAGTAGATATACACAGAATCTCTAG  300

seq1  GGCACATGAGGTCTGTAATGGTCCTCAGAGTAGTCCAGAAGAAGATGATA  348
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  GGCACATGAGGTCTGTAATGGTCCTCAGAGTAGTCTGGAAGAAGATGATA  350

seq1  TCCTGATGTCCATCAGCTAAAGAGTGAAAATGTACTATGTGATGCAGCCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGTCCATCAGCTAAAGAGTGAAAATGTACTATGTGATGCAGCCC  400

seq1  TTTCATGAACTATTGCTCAGTGTGAGATAATCCATGCAAGTATTTGACCT  448
      ||||||||||||| |||||||||||||||||  |||||||||||||||||
seq2  TTTCATGAACTATGGCTCAGTGTGAGATAATTTATGCAAGTATTTGACCT  450

seq1  TCAACTAGTTAGCCTCATATTACTCCAAATATCCCTGACACAGTTATATT  498
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAACTAGTTAGCCTCATATTACTCAAAATATCCCTGACACAGTTATATT  500

seq1  ATTTGAAGAACATTGTTCCATTGGATCCTATTTATAATGACTTCCTATGT  548
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTTGAAGAACATTGTTCCATTGGATCCTATTTATAATGACTTCCTATTT  550

seq1  TTCTGGGATCATACCTTTGGATACCAAATAGGTCAGGCAATGATAAAGGG  598
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  TTCTGGGATCATACCTTTGGACACCAAGTAGGTCAGGCAATGATAAAGGG  600

seq1  AACCTCTAATGGAAGGAACTGTTTACTTTGGGACAAGACTGAAACAGTGA  648
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGCCTCTAATGGAAGGAACTGTTTAATTTGGGACAAGACTGAAACAGTGA  650

seq1  AGGAGAGGCTAGTCCACCACCAACACGTGATCCTTTGCTGGCAGAGAAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGCTAGTCCACCACCAACACGTGATCCTTTGCTGGCAGAGAAGC  700

seq1  CTACTCTACACATCCTTTGGAACTTGCTAAGACAGATTGAATAATGTACC  748
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  CTACTCTACACAGTCTTTGGAACTTGCTAAGACAGATTGAATAATGTACC  750

seq1  AAGAACCCCGGTTCATGAGGGGAAAGCATATCACTGACTGAGCTGTCTAT  798
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCCTGGTTCATGAGGGGAAAGCATATCACTGACTGAGCTGTCTAT  800

seq1  ATGCTTTGCCCACTATGTACCTATCCCATTTAAGATTTGTTTTTTATGTC  848
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  ATGCTTTGCCCACTATATACCTATCTCATTTAAGATTTGTTTTTTATGTC  850

seq1  TACAAAATATCCTGGGAGATTTTTATAATAGCATTAACTGGGGAATCTAA  898
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACAAAATATCCT-GGAGATTTTTATAATAGCATTAACTGGGGAATCTAA  899

seq1  ACAGTTTGCTGAAGTATAAGGTGCTAGTGTTATGTGAATACAAATAATTT  948
       ||||||||| || ||||| ||||||||||||||||||||||||||||||
seq2  GCAGTTTGCTTAAATATAA-GTGCTAGTGTTATGTGAATACAAATAATTT  948

seq1  GTATATTTGACAGAGTGCTCTACAACAGGCTTAGATATACAGGTGTGTTG  998
      ||||||||||||||||||||||| |||||||||||| |||| ||||||  
seq2  GTATATTTGACAGAGTGCTCTAC-ACAGGCTTAGATTTACA-GTGTGT--  994

seq1  TTATATTCCTTCATGGCCATCACTTTTAAAATTCAGTTCCTAGCCATGGG  1048
       |||| || ||||| |||||||| |||||||||||||| |||| ||||||
seq2  GTATA-TCTTTCAT-GCCATCAC-TTTAAAATTCAGTT-CTAG-CATGGG  1039

seq1  AATA-TTTTCAGTTAGCACATTCTTTCTGATTTTAGTACCCATGCAGTGC  1097
      |||| ||||||| |||||  | ||||||||||| || |||||||||  | 
seq2  AATATTTTTCAGGTAGCAATTCCTTTCTGATTTAAG-ACCCATGCA--GG  1086

seq1  CTGTGGATTTCGTG-TGATAT--GTTTTCTCTGGTTATTTCCAGATATAG  1144
      |||||   | | || ||||||   |||||||| ||||||||| |||||||
seq2  CTGTG--ATCCATGTTGATATTGCTTTTCTCT-GTTATTTCC-GATATAG  1132

seq1  GAATTGA  1151
      |||||||
seq2  GAATTGA  1139