BAC Information

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BAC

Clone NameB6Ng01-343O02
Chromosome14 (Build37)
Map Location 94,736,688 - 94,737,772
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343O02.bB6Ng01-343O02.g
ACCGA126539GA126540
length1,0761,064
definitionB6Ng01-343O02.b B6Ng01-343O02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaggtacacaagacaacatgatatcgtcaatagaagtgaccctt
tactctttcataaatgagtttacattgagagcaaaaacctctacacattg
agatacattgctatatgaaacaagagcagaagaaactccaaatttcttaa
gttatccataagaagaaactccaaatttcttaagttatcaataataagtg
ttttgttagagttagataagaaactttcataagaattccaagattttttt
tttctgagacagggtttctctgtgtagccctagctatcctggtacttatt
ctgtagaccaggctggcctagaactcagaaaaccatctgcctctgctttc
caagtgctgagattaaaggtgtgcaccaccactgcccggccatccctttt
tttttttaaatttaatcctttcattcatttatatttcaaaagatatcccc
cttcccgcttattccttcacagacccctcaacccatccccactctctccc
ctcccctttgcctctatgcggtcattctttaacatgctatttcacttatt
gtatcaagacgatcagatgtatgaggttgatagacaaacaagattcttgg
catatatccttaatctcaaagtgaagttctgactgaaacttatataaaat
atgaaaacatttgctgccatatccggggatccatcccataatcagcttcc
aaacgctgacaccattgcacacactagcaagattttgctgaaaagaccca
gatagagctctctcttgtgagactatgccggggcctagcaaacacagaag
tggatgctcacagtcagctattgtatggatcacagggccctcaatgtcgg
agctagagaaagtacccaagggctaaagggatctgcaaccctgtaggtgg
aagaacatcatgaactaaccagtacccctgagctcttgactctagctgca
tatgtatcaaagatggcctagtcggccatcactggaaagagaggcccact
ggacttgcaaactgtatatgcccagtacaggggaataccagggccaagaa
gtggagtggggtggggttaggggaat

gaattcattagtactacctttgtcaattatccacagcatttgtcaaattc
cttctaccagtgaaatattcctatctctaactgaaagtacaaactttaac
aatatgattatgagagatgattttaaatgcatattaattactttgatatt
atttttttctcctcacttaagttaatctatgtaaaaacataatcatttac
agattgcaaataaatatccccaggtaactttctttcatttgaatatgtct
tatcttttctattttctaaccatataccacagaatgtacaattaattcat
attttataatatatatgaattaacatatcattggcatctaattagtactt
ttagacttcattgagttttattttttttaaatatgtgagggtgttttatc
tgaatacgtatacatgtaccttgtacacacagcgtccttggaggccagca
ggaagcggagaattccaagtaactggaggtgaagatacttgcaaattatc
gtattggtaacaagaacctggattgaccaatagagaagccagtgttctta
acgactgagcaatctccttaaccccgctaatttatattttattaaaacaa
ataaatataaaaatcactaagcagtatatagaaaacatgaaacctgtggt
atcaggagcaatcatagaacaagctaataacaagcaggtgatcttctaga
gatgagcctactttggattaacaaatactccactacagatttgtccccat
agtcaaggcccaggagaaaatcatttttggaaagattcttgctattaata
tgcttttcctgttattattaaacatatataactttcactaggtattagcc
cacccttttgagcagatctctgcagaagtataaagatatactgtctttcg
tgatgctatgtagtcaaatagtagcttcttattctaatgatgatccacat
atctaaattataccagtattattagctcttttgtagtgggactgctatag
tccttctgatagataaatgcactagaactctgtagccttctgttgcaggt
atgctctactactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94736688_94737772
seq2: B6Ng01-343O02.g_65_1128

seq1  GAATTCATTAGTACTACCTTTGTCAATTATCCACAGCATTTGTCAAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGTACTACCTTTGTCAATTATCCACAGCATTTGTCAAATTC  50

seq1  CTTCTACCAGTGAAATATTCCTATCTCTAACTGAAAGTACAAACTTTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACCAGTGAAATATTCCTATCTCTAACTGAAAGTACAAACTTTAAC  100

seq1  AATATGATTATGAGAGATGATTTTAAATGCATATTAATTACTTTGATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATTATGAGAGATGATTTTAAATGCATATTAATTACTTTGATATT  150

seq1  ATTTTTTTCTCCTCACTTAAGTTAATCTATGTAAAAACATAATCATTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCTCCTCACTTAAGTTAATCTATGTAAAAACATAATCATTTAC  200

seq1  AGATTGCAAATAAATATCCCCAGGTAACTTTCTTTCATTTGAATATGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCAAATAAATATCCCCAGGTAACTTTCTTTCATTTGAATATGTCT  250

seq1  TATCTTTTCTATTTTCTAACCATATACCACAGAATGTACAATTAATTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTCTATTTTCTAACCATATACCACAGAATGTACAATTAATTCAT  300

seq1  ATTTTATAATATATATGAATTAACATATCATTGGCATCTAATTAGTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAATATATATGAATTAACATATCATTGGCATCTAATTAGTACTT  350

seq1  TTAGACTTCATTGAGTTTTATTTTTTTTAAATATGTGAGGGTGTTTTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTTCATTGAGTTTTATTTTTTTTAAATATGTGAGGGTGTTTTATC  400

seq1  TGAATACGTATACATGTACCTTGTACACACAGCGTCCTTGGAGGCCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACGTATACATGTACCTTGTACACACAGCGTCCTTGGAGGCCAGCA  450

seq1  GGAAGCGGAGAATTCCAAGTAACTGGAGGTGAAGATACTTGCAAATTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCGGAGAATTCCAAGTAACTGGAGGTGAAGATACTTGCAAATTATC  500

seq1  GTATTGGTAACAAGAACCTGGATTGACCAATAGAGAAGCCAGTGTTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGTAACAAGAACCTGGATTGACCAATAGAGAAGCCAGTGTTCTTA  550

seq1  ACGACTGAGCAATCTCCTTAACCCCGCTAATTTATATTTTATTAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTGAGCAATCTCCTTAACCCCGCTAATTTATATTTTATTAAAACAA  600

seq1  ATAAATATAAAAATCACTAAGCAGTATATAGAAAACATGAAACCTGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATAAAAATCACTAAGCAGTATATAGAAAACATGAAACCTGTGGT  650

seq1  ATCAGGAGCAATCATAGAACAAGCTAATAACAAGCAGGTGATCTTCTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAGCAATCATAGAACAAGCTAATAACAAGCAGGTGATCTTCTAGA  700

seq1  GATGAGCCTACTTTGGATTAACAAATACTCCACTACAGATTTGTCCCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCCTACTTTGGATTAACAAATACTCCACTACAGATTTGTCCCCAT  750

seq1  AGTCAAGGCCCAGGAGAAAATCATTTTTGGAAAGATTCTTGCTATTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGCCCAGGAGAAAATCATTTTTGGAAAGATTCTTGCTATTAATA  800

seq1  TGCTTTTCCTGTTATTATTAAACATATATAACTTTCACTAGGTATTAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCCTGTTATTATTAAACATATATAACTTTCACTAGGTATTAGCC  850

seq1  CACCCTTTTGAGCAGATCTCTGCAGAAGTATAAAGATATACTGTCTTTCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTTGAGCAGATCTCTGCAGAAGTATAAAGATATACTGTCTTTCG  900

seq1  TGATGCTATGTAGTCAAATAGTTAGCTTCTTAATTCTTAATGATGATCCC  950
      ||||||||||||||||||||| ||||||||| |||| |||||||||| ||
seq2  TGATGCTATGTAGTCAAATAG-TAGCTTCTT-ATTC-TAATGATGAT-CC  946

seq1  ACAATAATTCCTAAAATTATACCAGTATTTATTAAGCTCTTTTGTAGTGG  1000
      ||    ||  || |||||||||||||| ||||| ||||||||||||||||
seq2  AC----ATATCT-AAATTATACCAGTA-TTATT-AGCTCTTTTGTAGTGG  989

seq1  GACTGCTATTAGGTCCTTCTTGATAGTAAAAATTGCACTTAGAACTCTGG  1050
      |||||||||   ||||||| ||||||  | || ||||| ||||||||| |
seq2  GACTGCTAT--AGTCCTTC-TGATAG--ATAAATGCAC-TAGAACTCT-G  1032

seq1  TAGCC-TCTGTTGCCAGTTAATTGCTTCTACTACTC  1085
      ||||| ||||||| ||| ||  ||| ||||||||||
seq2  TAGCCTTCTGTTG-CAGGTA--TGC-TCTACTACTC  1064


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