BAC Information

Click to search

BAC

Clone NameB6Ng01-343O12
Chromosome14 (Build37)
Map Location 108,782,973 - 108,784,158
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneEG668761, Slitrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343O12.bB6Ng01-343O12.g
ACCGA126558GA126559
length1,2271,168
definitionB6Ng01-343O12.b B6Ng01-343O12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaactttaacaacaaaaatccattaaaagcaaatatttttcctt
aatatctcttaatataaatggactcaattccacaataaaaagacatagac
taacagactggttacaaaacagaacccaagattttgctacatacagggaa
cccaactcagtgacaaagacagacactacctcagagtaaaagtctagaaa
caattttctaagcaaaaggtcagaagaaacaagttggagtagccattcca
atatcaaataaaatatcgactttcaacctaaagttatcaaaaagataaag
gatacttcatattcatcaaaggtaaatctaccaagatgaactctcaattc
tgaacatctatgatccaaatacaagggcatccataggaaactaaaagaga
cacagtgaaactaacagaagttataaaacaaatggatcaaatggatttaa
tagaagatttttttcctaaaacaaagggatataccttcttttcagcacct
tctccaaaattgaccatataattggtcacaaaacaggcctcaacaactac
aacaagattgaaataatcccatgcatcctatcagatcaacacagactgag
gctgatcttcaataacaaagtaaataatagaaggcccacaaacacatgga
agcttaacaacactctactgaatgataacttgggttaggaaaaactaaag
aaagaaattaagacgttttagagtttaataaaaataaagccacaacatac
caaaactcatgggacacaatgaaaacagtcctaagaggaaaactcatagc
tttgagtgtctccaaaaaagaaactggagagagcatacactagcaacttg
acagcacacctgaaagctatcgatcaaaaagaagcaatttcacacaagag
gagtagaccgccagaaataataaaactcagggctgaaataaaatggaaac
aaaaagaactatacaagaatcaaccaaaccatgagctggttctttgagaa
atcaacaaaatagataaaccctttagccagactactcgagggcacagaga
cagtttcctattatgaaatcagaaatgaaaagggagatttaaggaagaga
atcttgagaaattctaaaaaataaagaaaatcttcgaatttctactctac
caaaaccttatactcacaaacctggcaatcttggcaatgaaatggccaca
cccttgccttgtggacctgtgtattac

gaattctcaaaaataagaagttttagagtatatggagccaaagtgtttct
aattatgaagctggcacactttgagcaataacgtaatttagtattagatt
atacttctatgaataaaataaggattcaccacctacaatgtttgtggaca
gatgaaaaatagaatagaatgaacaggcattgttggcatcagaattccca
gggattaatatatcattcacatcaggaagaagaagtgctttcctttgtct
tatgtgaactatgtgcataaagatgtgccatcaaagaacacagaagagaa
aggaataatgagggaatcctacagggttgaggcacagtaagtagtacctc
aagcaaatggtctactacaaagccatagcttatgtcatagtcatacagat
cccataaacaagagacagtggaaaaggttggttttcttctccagcttttt
atgccttctagaaaggaaaacatggtataataaagagaaaactcataaaa
ctctagctgaagaacattttataatattcctcaatttgatgaagacaagc
gtggtaatcaaactaaaagcatatattcatatgtgcttccatgtaagtgt
gaaaatacatgcatgtatacattttcaatgagtagaattcttagaataag
attttttgtgcatgtggtgacatttttgtatttataagctttgacaattt
tagccatatttcataaaaggtgaagagtaaagaaaattcttcaggtttaa
tacttttatttccattttaacagccagaagaagttatagaaggaagttat
ggaggaagaaaaggctctctatgcatatgttcaacatcattcagtgcatt
tatttccagtttttaatgactcttaccaaaatagtgtgaaattttgaatt
ctatgtatttcaattttttatttagtttcttccttacaaatctagggatt
aaaatatcttatttgtttctctatcattattaaataaacctaaggagtat
cgatactgggatgattgtgaaactgctttattttgtcttgttttgaaaaa
gacctccactgtgtagccctgatagcgtggaaatccagaatcatctgcct
ctgttctctggaggtggataaagcctaaccagcatacctagatctaatca
taatagcactattttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_108782973_108784158
seq2: B6Ng01-343O12.g_69_1236 (reverse)

seq1  AAAAAAATAGTGCTATAATAGATTAGATACTTTAAGTATGCTGGTGTATG  50
      |||||||||||||||| || |||||||   | || |||||||||| || |
seq2  AAAAAAATAGTGCTATTAT-GATTAGA---TCTAGGTATGCTGGT-TAGG  45

seq1  GTTTTAATCCCAACACTTCAGAG-ACAGAGGCAGATGAATTTCTGGGATT  99
       |||  ||||  || || ||||| ||||||||||||||  |||| |||||
seq2  CTTT--ATCC--AC-CTCCAGAGAACAGAGGCAGATGA--TTCT-GGATT  87

seq1  TCAACGCTATCCAGGGCTACACAGT-GAGTCCTTTTTTCAAAACAAGAC-  147
      || ||||||| |||||||||||||| |||  | |||||||||||||||| 
seq2  TCCACGCTAT-CAGGGCTACACAGTGGAGGTC-TTTTTCAAAACAAGACA  135

seq1  AAATAAAGCAGGTTTTCACAATCATCCCAGTAATCGATACTCCTTAGGTT  197
      |||||||||||  |||||||||||||||||| ||||||||||||||||||
seq2  AAATAAAGCAG--TTTCACAATCATCCCAGT-ATCGATACTCCTTAGGTT  182

seq1  TATTTAATAATGATAGGAGAAAACAAATAAGATATTTTAATCCCTAGATT  247
      ||||||||||||||| ||| |||||||||||||||||||||||||||| |
seq2  TATTTAATAATGATA-GAG-AAACAAATAAGATATTTTAATCCCTAGA-T  229

seq1  TTGTAAGGAAGAAACTAAATAAAAAATTGAAATACATAGAATTCAAAATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGAAGAAACTAAATAAAAAATTGAAATACATAGAATTCAAAATT  279

seq1  TCACACTATTTTGGTAAGAGTCATTAAAAACTGGAAATAAATGCACTGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTATTTTGGTAAGAGTCATTAAAAACTGGAAATAAATGCACTGAA  329

seq1  TGATGTTGAACATATGCATAGAGAGCCTTTTCTTCCTCCATAACTTCCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGAACATATGCATAGAGAGCCTTTTCTTCCTCCATAACTTCCTT  379

seq1  CTATAACTTCTTCTGGCTGTTAAAATGGAAATAAAAGTATTAAACCTGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACTTCTTCTGGCTGTTAAAATGGAAATAAAAGTATTAAACCTGAA  429

seq1  GAATTTTCTTTACTCTTCACCTTTTATGAAATATGGCTAAAATTGTCAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCTTTACTCTTCACCTTTTATGAAATATGGCTAAAATTGTCAAA  479

seq1  GCTTATAAATACAAAAATGTCACCACATGCACAAAAAATCTTATTCTAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATAAATACAAAAATGTCACCACATGCACAAAAAATCTTATTCTAAG  529

seq1  AATTCTACTCATTGAAAATGTATACATGCATGTATTTTCACACTTACATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTACTCATTGAAAATGTATACATGCATGTATTTTCACACTTACATG  579

seq1  GAAGCACATATGAATATATGCTTTTAGTTTGATTACCACGCTTGTCTTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACATATGAATATATGCTTTTAGTTTGATTACCACGCTTGTCTTCA  629

seq1  TCAAATTGAGGAATATTATAAAATGTTCTTCAGCTAGAGTTTTATGAGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGAGGAATATTATAAAATGTTCTTCAGCTAGAGTTTTATGAGTT  679

seq1  TTCTCTTTATTATACCATGTTTTCCTTTCTAGAAGGCATAAAAAGCTGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTATTATACCATGTTTTCCTTTCTAGAAGGCATAAAAAGCTGGA  729

seq1  GAAGAAAACCAACCTTTTCCACTGTCTCTTGTTTATGGGATCTGTATGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAACCAACCTTTTCCACTGTCTCTTGTTTATGGGATCTGTATGAC  779

seq1  TATGACATAAGCTATGGCTTTGTAGTAGACCATTTGCTTGAGGTACTACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACATAAGCTATGGCTTTGTAGTAGACCATTTGCTTGAGGTACTACT  829

seq1  TACTGTGCCTCAACCCTGTAGGATTCCCTCATTATTCCTTTCTCTTCTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGCCTCAACCCTGTAGGATTCCCTCATTATTCCTTTCTCTTCTGT  879

seq1  GTTCTTTGATGGCACATCTTTATGCACATAGTTCACATAAGACAAAGGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTGATGGCACATCTTTATGCACATAGTTCACATAAGACAAAGGAA  929

seq1  AGCACTTCTTCTTCCTGATGTGAATGATATATTAATCCCTGGGAATTCTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTCTTCTTCCTGATGTGAATGATATATTAATCCCTGGGAATTCTG  979

seq1  ATGCCAACAATGCCTGTTCATTCTATTCTATTTTTCATCTGTCCACAAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAACAATGCCTGTTCATTCTATTCTATTTTTCATCTGTCCACAAAC  1029

seq1  ATTGTAGGTGGTGAATCCTTATTTTATTCATAGAAGTATAATCTAATACT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGGTGGTGAATCCTTATTTTATTCATAGAAGTATAATCTAATACT  1079

seq1  AAATTACGTTATTGCTCAAAGTGTGCCAGCTTCATAATTAGAAACACTTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACGTTATTGCTCAAAGTGTGCCAGCTTCATAATTAGAAACACTTT  1129

seq1  GGCTCCATATACTCTAAAACTTCTTATTTTTGAGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATATACTCTAAAACTTCTTATTTTTGAGAATTC  1168


| Home | SequenceCutter | Blast | Download |