BAC Information

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BAC

Clone NameB6Ng01-344L03
Chromosome14 (Build37)
Map Location 5,646,166 - 5,787,352
singlet/doubletdoublet
Overlap geneEG666706, LOC100041195, LOC100041545, LOC100041565
Upstream geneLOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184
Downstream geneLOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702, LOC100041363, LOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825, LOC100041421, LOC100041817, LOC100041431, LOC100041438, LOC100041442, LOC100041848, LOC100041456, LOC100041758, LOC100041470, LOC100041804, LOC100041487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344L03.bB6Ng01-344L03.g
ACCGA127113GA127114
length1,1501,175
definitionB6Ng01-344L03.b B6Ng01-344L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,646,166 - 5,647,322)(5,786,160 - 5,787,352)
sequence
gaattcagaaatctgcctgcctctgcctcccaagtgctgggattaaagta
gtgagccactatgaccgggcttctctagtgctttttattcctctaaaatg
atcgcagagtcgttgggtctcccttgaaacatctcctctgcatagtctga
attatcttggtcctgaaccataacagatacctcattgttttctgctcagt
tatgattttatgtgaatcaatctgtgtgtgcttctgtgtgtgtctttgtc
tctgacagtgtgtctgtgtgtttctttttgtgtatgcattgttttcttga
cctgtgtctctctcggtatgttgggaggccattcagtgacatctgagttg
tccagttattctctatattacttctttgagcattggtctctcaataaaag
tgacatttcctgttcttttctgtccagtagtctttgcatctcctgttcac
tatcaggtagcaccccctctctcatttatttcatcaaattaataaacaat
acagctattttaaaaataagtgttagatttcttcactttccctgcataga
gttatctccctaggagatttgggtttgtcttattggctccaccatgaaca
tgcatagaatcctaccgtgcatccctctgctaacatggcttttgctaact
atatcgtgggcatggctttgtttcaggatagattcctcctcatagttggc
acagtgctgcatttcataaatgtcacagcacgttatttcaccagcttttt
ttctgactgatattgaggaagatttaatatcacatgaactgtaataggtt
gaaaagttcctgggtagtgaccaaaagtcactgtcttcctctgatgctac
caaggaaccagtgtaggtatagtgaggggaccgagagagtcaacatgggg
cttgctgggggcttttcttaaggaatctctttcttgggaatttgggtatt
gtgttgtccaggttatctgtgcagagcttgtaacttcctggtaggaccag
aaagcatctgcataaaaatttttttgaagagagttattacagatgaggct
gcaagactgcctgagtctagacttatacacatatatcaatcagaggtccc
agtagcctgctcatgcacagaacttgctggcgaacgtatattttcattga

gaattcagtgttcatcctgtgttaggccatgacccaagaagcaaataatc
tgctgaattaaggattcaataatcatgtgccaacaggttatgtcatggac
taacaagccgagtgcatgccaaatcctggctcattcaaactgggtcccct
tggtgctaattaaacttactatcctgggtagaggacagcagaaccagggg
accaaatggagctagctgaccttcaagggcttcctggacaagcatgaagg
aatagactacttctatgacaattttccacaacactgtgccacaggcatgg
gtccagtagatatctgtaatgactttcctcttgtttttaaagcagggatt
atcattccttggttcctgttgttatttgaattcccagaggacacaactag
tatttacaggagaaaggctttatcacacctcctcccccagaagattcctg
tgtgacaccaaggaaacaccaggagcaaacttccctggtgatcactttgg
acctctatggactcaacactatcaggacctgaaaactgtgcttcacacaa
atcctcagaccccatcaaaggtcccagagccccagtcctgaacaaaacac
acaaacatctacattcacacacacagacacaattagaatgccaaataaat
cctgtgaggtgccatctctcagaatataataaacaatatcagagtaaagc
catgatagcctgcaggcattgcattcacacactgaaagacagtaagtgtg
agcaggtccttccagctgtttacagcaacaatcagattgcaagcacccca
aggtcaagtacaaaagaagatgataataaacacacagcaccttgtttatc
caacaattaaacacaggtcaaggctacttaattgaatgatcggagatgac
acactccattcatggaaggaaattggggtaacagatggcagaatgcaatc
aatagggtactggtcatagttcctacctgtagtttaaatcctcataacat
gtaaacattcagaattccacacattcttctctcatgctgtcttctatatg
caattcagtctctacttatttatatttgatatctgatttgggatgttgat
ttggtgaagtatttctagcagaccttgcagaatgaaataacacaaatgaa
tggcatacttatgcccagtgcaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_5646166_5647322
seq2: B6Ng01-344L03.b_46_1195

seq1  GAATTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGTA  50

seq1  GTGAGCCACTATGACCGGGCTTCTCTAGTGCTTTTTATTCCTCTAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACTATGACCGGGCTTCTCTAGTGCTTTTTATTCCTCTAAAATG  100

seq1  ATCGCAGAGTCGTTGGGTCTCCCTTGAAACATCTCCTCTGCATAGTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCAGAGTCGTTGGGTCTCCCTTGAAACATCTCCTCTGCATAGTCTGA  150

seq1  ATTATCTTGGTCCTGAACCATAACAGATACCTCATTGTTTTCTGCTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTGGTCCTGAACCATAACAGATACCTCATTGTTTTCTGCTCAGT  200

seq1  TATGATTTTATGTGAATCAATCTGTGTGTGCTTCTGTGTGTGTCTTTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTTATGTGAATCAATCTGTGTGTGCTTCTGTGTGTGTCTTTGTC  250

seq1  TCTGACAGTGTGTCTGTGTGTTTCTTTTTGTGTATGCATTGTTTTCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGTGTGTCTGTGTGTTTCTTTTTGTGTATGCATTGTTTTCTTGA  300

seq1  CCTGTGTCTCTCTCGGTATGTTGGGAGGCCATTCAGTGACATCTGAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCTCTCTCGGTATGTTGGGAGGCCATTCAGTGACATCTGAGTTG  350

seq1  TCCAGTTATTCTCTATATTACTTCTTTGAGCATTGGTCTCTCAATAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTATTCTCTATATTACTTCTTTGAGCATTGGTCTCTCAATAAAAG  400

seq1  TGACATTTCCTGTTCTTTTCTGTCCAGTAGTCTTTGCATCTCCTGTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTCCTGTTCTTTTCTGTCCAGTAGTCTTTGCATCTCCTGTTCAC  450

seq1  TATCAGGTAGCACCCCCTCTCTCATTTATTTCATCAAATTAATAAACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGTAGCACCCCCTCTCTCATTTATTTCATCAAATTAATAAACAAT  500

seq1  ACAGCTATTTTAAAAATAAGTGTTAGATTTCTTCACTTTCCCTGCATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATTTTAAAAATAAGTGTTAGATTTCTTCACTTTCCCTGCATAGA  550

seq1  GTTATCTCCCTAGGAGATTTGGGTTTGTCTTATTGGCTCCACCATGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTCCCTAGGAGATTTGGGTTTGTCTTATTGGCTCCACCATGAACA  600

seq1  TGCATAGAATCCTACCGTGCATCCCTCTGCTAACATGGCTTTTGCTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGAATCCTACCGTGCATCCCTCTGCTAACATGGCTTTTGCTAACT  650

seq1  ATATCGTGGGCATGGCTTTGTTTCAGGATAGATTCCTCCTCATAGTTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGTGGGCATGGCTTTGTTTCAGGATAGATTCCTCCTCATAGTTGGC  700

seq1  ACAGTGCTGCATTTCATAAATGTCACAGCACGTTATTTCACCAGCTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTGCATTTCATAAATGTCACAGCACGTTATTTCACCAGCTTTTT  750

seq1  TTCTGACTGATATTGAGGAAGATTTAATATCACATGAACTGTAATAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGATATTGAGGAAGATTTAATATCACATGAACTGTAATAGGTT  800

seq1  GAAAAGTTCCTGGGTAGTGACCAAAAGTCACTGTCTTCCTCTGATGCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTCCTGGGTAGTGACCAAAAGTCACTGTCTTCCTCTGATGCTAC  850

seq1  CAAGGAACCAGTGTAGGTATAGTGAGGGGACCGAGAGAGTCAACATGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACCAGTGTAGGTATAGTGAGGGGACCGAGAGAGTCAACATGGGG  900

seq1  CTTGCTGGGGGCTTTTCTT-AGGAATCTCTTTCTTGGGAATTT-GGTATT  948
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  CTTGCTGGGGGCTTTTCTTAAGGAATCTCTTTCTTGGGAATTTGGGTATT  950

seq1  GTGTTGTCCAGGTTATCTGTGCAGAGCTTGTAACTTCCTGGTAGGACCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTCCAGGTTATCTGTGCAGAGCTTGTAACTTCCTGGTAGGACCAG  1000

seq1  AAAGCATCTGCATAAAAATTTTTTTGAAGAGGAGTTAATTACAGATGAGG  1048
      |||||||||||||||||||||||||||||| ||||| ||||||||||| |
seq2  AAAGCATCTGCATAAAAATTTTTTTGAAGA-GAGTT-ATTACAGATGA-G  1047

seq1  GCCGCAAAGACTGCCTGAGTCTAAGAACCTTATACACATATA--CATCAG  1096
      || || |||||||||||||||| |||  ||||||||||||||   |||||
seq2  GCTGC-AAGACTGCCTGAGTCT-AGA--CTTATACACATATATCAATCAG  1093

seq1  AGGTCCCAGTAG-CTGCTCATGCAACAGGAACTTTGCTGGGCGACAGTAA  1145
      |||||||||||| |||||||||| ||| |||| ||||| |||||  || |
seq2  AGGTCCCAGTAGCCTGCTCATGC-ACA-GAAC-TTGCT-GGCGAACGT-A  1138

seq1  TATTTTCATTGA  1157
      ||||||||||||
seq2  TATTTTCATTGA  1150

seq1: chr14_5786160_5787352
seq2: B6Ng01-344L03.g_67_1241 (reverse)

seq1  CCCTGCCACTGGGCCATTAAGTATGCAAATTCATTTGTGTT-TATCTATC  49
      ||||| ||||||||   |||||||||  ||||||||||||| | ||  ||
seq2  CCCTG-CACTGGGC--ATAAGTATGC-CATTCATTTGTGTTATTTCATTC  46

seq1  TGCAGGGTCTGCTAGAAATACTTCAACCCAAAATTCCAACATCACAAATC  99
      |||| ||||||||||||||||||||  |||||    ||||||| ||||||
seq2  TGCAAGGTCTGCTAGAAATACTTCA--CCAAA---TCAACATCCCAAATC  91

seq1  AGATATCAAATATAAATAAAGTAGAAGAACTGAAATTGCATATAAGGAAG  149
      ||||||||||||||||| |||||||   |||| |||||||||||  ||||
seq2  AGATATCAAATATAAAT-AAGTAGA--GACTG-AATTGCATATA--GAAG  135

seq1  ACCAGCAATGAGAGGAAGGAAATGTGTGGAATCCTGAATGTTTACATG-T  198
      | |||| |||||| ||||  |||||||||||| ||||||||||||||| |
seq2  A-CAGC-ATGAGA-GAAG--AATGTGTGGAATTCTGAATGTTTACATGTT  180

seq1  ATGAGGATTTAAACTACAGGTAGGAACTATGACCAGTACCCTATTGATTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGATTTAAACTACAGGTAGGAACTATGACCAGTACCCTATTGATTG  230

seq1  CATTCTGCCATCTGTTACCCCAATTTCCTTCCATGAATGGAGTGTGTCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGCCATCTGTTACCCCAATTTCCTTCCATGAATGGAGTGTGTCAT  280

seq1  CTCCGATCATTCAATTAAGTAGCCTTGACCTGTGTTTAATTGTTGGATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGATCATTCAATTAAGTAGCCTTGACCTGTGTTTAATTGTTGGATAA  330

seq1  ACAAGGTGCTGTGTGTTTATTATCATCTTCTTTTGTACTTGACCTTGGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTGCTGTGTGTTTATTATCATCTTCTTTTGTACTTGACCTTGGGG  380

seq1  TGCTTGCAATCTGATTGTTGCTGTAAACAGCTGGAAGGACCTGCTCACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCAATCTGATTGTTGCTGTAAACAGCTGGAAGGACCTGCTCACAC  430

seq1  TTACTGTCTTTCAGTGTGTGAATGCAATGCCTGCAGGCTATCACGGCTTT  498
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTACTGTCTTTCAGTGTGTGAATGCAATGCCTGCAGGCTATCATGGCTTT  480

seq1  ACTCTGATATTGTTTATTATATTCTGAGAGATGGCACCTCACAGGATTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATATTGTTTATTATATTCTGAGAGATGGCACCTCACAGGATTTA  530

seq1  TTTGGCATTCTAATTGTGTCTGTGTGTGTGAATGTAGATGTTTGTGTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATTCTAATTGTGTCTGTGTGTGTGAATGTAGATGTTTGTGTGTT  580

seq1  TTGTTCAGGACTGGGGCTCTGGGACCTTTGATGGGGTCTGAGGATTTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGGACTGGGGCTCTGGGACCTTTGATGGGGTCTGAGGATTTGTG  630

seq1  TGAAGCACAGTTTTCAGGTCCTGATAGTGTTGAGTCCATAGAGGTCCAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACAGTTTTCAGGTCCTGATAGTGTTGAGTCCATAGAGGTCCAAA  680

seq1  GTGATCACCAGGGAAGTTTGCTCCTGGTGTTTCCTTGGTGTCACACAGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCACCAGGGAAGTTTGCTCCTGGTGTTTCCTTGGTGTCACACAGGA  730

seq1  ATCTTCTGGGGGAGGAGGTGTGATAAAGCCTTTCTCCTGTAAATACTAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGGGGGAGGAGGTGTGATAAAGCCTTTCTCCTGTAAATACTAGT  780

seq1  TGTGTCCTCTGGGAATTCAAATAACAACAGGAACCAAGGAATGATAATCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTCTGGGAATTCAAATAACAACAGGAACCAAGGAATGATAATCC  830

seq1  CTGCTTTAAAAACAAGAGGAAAGTCATTACAGATATCTACTGGACCCATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTAAAAACAAGAGGAAAGTCATTACAGATATCTACTGGACCCATG  880

seq1  CCTGTGGCACAGTGTTGTGGAAAATTGTCATAGAAGTAGTCTATTCCTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGCACAGTGTTGTGGAAAATTGTCATAGAAGTAGTCTATTCCTTC  930

seq1  ATGCTTGTCCAGGAAGCCCTTGAAGGTCAGCTAGCTCCATTTGGTCCCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGTCCAGGAAGCCCTTGAAGGTCAGCTAGCTCCATTTGGTCCCCT  980

seq1  GGTTCTGCTGTCCTCTACCCAGGATAGTAAGTTTAATTAGCACCAAGGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGCTGTCCTCTACCCAGGATAGTAAGTTTAATTAGCACCAAGGGG  1030

seq1  ACCCAGTTTGAATGAGCCAGGATTTGGCATGCACTCGGCTTGTTAGTCCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTTTGAATGAGCCAGGATTTGGCATGCACTCGGCTTGTTAGTCCA  1080

seq1  TGACATAACCTGTTGGCACATGATTATTGAATCCTTAATTCAGCAGATTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAACCTGTTGGCACATGATTATTGAATCCTTAATTCAGCAGATTA  1130

seq1  TTTGCTTCTTGGGTCATGGCCTAACACAGGATGAACACTGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCTTGGGTCATGGCCTAACACAGGATGAACACTGAATTC  1175