BAC Information

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BAC

Clone NameB6Ng01-346J14
Chromosome14 (Build37)
Map Location 13,239,489 - 13,380,061
singlet/doubletdoublet
Overlap geneCadps
Upstream geneLOC667059, LOC100041996, Ptprg, LOC100042441, 3830406C13Rik, EG667072, Fezf2
Downstream geneEG432822, LOC100042022, LOC100042026, EG328354, Synpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346J14.bB6Ng01-346J14.g
ACCGA128451GA128452
length1,2261,164
definitionB6Ng01-346J14.b B6Ng01-346J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,378,826 - 13,380,061)(13,239,489 - 13,240,641)
sequence
gaattctctagacatcactctcagaactggcctgtagatttcattagaaa
gctgagtcctggcaaatagcaaggaaacactgggaccatcccctggcctg
gtagcattgtgccctcagttcaaagggactgtcagtcagaatgtcaggca
tggggtaatagagccctgtagctctctggttaggcacctgtccctaaaga
tagctgagtaacaccactgctgccaggaggccctgcagatcgcaaatccc
aggtgctccatccattatgtacattggcgctgtactcacatgtcttctca
tagtctttaaatcacctgtaggttcctcttatgtcaagtaacagatacaa
tataaaattctagcatgctgtattgggctatactttccagcagtggagtg
tgatggagccctcggtatcctcctatctttgacccaccctccaagcccta
gagttaaggcagcacccagcaaagcgtatctgacatgctgccaaaaggca
ttttccaggggtagatggaggctacttggagcttcttcaacccaaagcac
aatgaggagctggaagagaaaaatcccagtccaggtgctactgacctctg
acccaaatgggacccaacatagactcctgccctgtctacgtctctcattt
cccattattctatcgtcccccacaggctttgaggtgtttctcttcttgta
atgtgaaactgtagaaatggaaaaggaaggagtagctaagagctggctat
tacaaacacatctcttctcaataactgacatggttagtgggagatggaca
atgttctctctcttaggttactctactacttctgaatttcagaaaaacaa
aagtaggaccatgatatcaccatgatgtcaccatgacatcaccgtcctcg
ctcctacagacttagccagtgaggaaaaagaaagaaggcagagggcattt
tgtcccatcgatgtgactgtgtgatctcaaccacccacagttcataaagg
agcagtctcagcatggacatgggctagcgtgcatggctcacatcaagtgt
ctaactctaacaagcatgactgtgtgttgccttttgtcttctgacagaaa
tgtatgcttctcctgcagtgatctcattcccacccaatagcctaaacaat
ctgatggccaaatgacagtctcgaactgcccgaatccagaaccctcaaaa
tccgaacttgtccgtgttccgaatgg
gaattcaccctaagcacatctcttttaatcccgattttcttctcagtctg
tatcttcaagaagtacaaggaggaaagaaaataaattaatttttgcttag
accttgaaatcttaggtgcttctcttgatctgatgtctaatttcagaaag
cacctttctttctttctctctctctcccttccttccttctcttccttcct
tctctctctttctttcttcctttctttcttcctttctccctttcttcctt
tctctctctctctctctctctctctctctctctctctctctcgcctttgt
tttgttttgttttgttttgttttgagggagatgctgaactaatcaccaaa
ggcggaggaaaggcaagctattactccagcctgagcatcctcccttagct
gctactttcagaacacaaagcttattgtgatctctgctttttattttctt
tataaagcatcgataattgacaaggaggcaaagcttcctctcgaatctta
gactaatgcaattttcctctaaaaatttagctcctctgaaatgattttaa
tccactgctacacttattatgatattcacttcatttaaatgtctgaatat
tttgtgtctaaatattaaaatcttatttttcagcaagtgaaaacagtata
attgtgcttcattctttttccctgaaaaataaaaaaagcagataagaatg
tttgtttggcatctaaaagtaccatggggaatggtcctgggattcgtctt
catcagactattattttaaattgatgaagtcagtcttaaagatatattat
tgaatatataatgttggtactttatagaaagaatatataaagcaactatg
ttactaaacagggaaactttcactggaaaaaaaatctgtttaggcagtac
tatatctaaatgcatttctccaaaatcctacagaatgcttgattttttaa
aatggtagagattaatgtggaaagtcttgcttctaagttatataataaag
taaatacatcattcagagcatcacaccacagaagccggcactgctgctct
gaacaatctccccacaaacccccgctcccagccaaaatacagcgatggag
cagagggagaaaaaaagaacaaggcccaagcctcagaaattcacccggca
agcaaccttgttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_13378826_13380061
seq2: B6Ng01-346J14.b_44_1269 (reverse)

seq1  CCATTCGG-ACA---GCAAGTT-TGATTTTGAGG--TCTTGATCGGGGCA  43
      |||||||| |||    ||||||  ||||||||||  ||| |||  |||||
seq2  CCATTCGGAACACGGACAAGTTCGGATTTTGAGGGTTCTGGATTCGGGCA  50

seq1  GTTTTTGGAGACTGTCATTTTGTGCCACTCAGATTGTTTGGGGCTATTTG  93
      |   || |||||||||||||   |||| |||||||||||  |||||||  
seq2  G---TTCGAGACTGTCATTT--GGCCA-TCAGATTGTTT-AGGCTATT--  91

seq1  GGGTGGGATGGAGGATCACCTGCAGGGAGAAAGCATACATTTCTGTCAGA  143
      ||||||||  || ||||| ||||| |||| ||||||||||||||||||||
seq2  GGGTGGGAATGA-GATCA-CTGCA-GGAG-AAGCATACATTTCTGTCAGA  137

seq1  AGACAAAA-GCAACACACAGTCATGCTTGTTAGAGTTAGACACTTTGATG  192
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  AGACAAAAGGCAACACACAGTCATGCTTGTTAGAGTTAGACAC-TTGATG  186

seq1  TGAAGCCATGCAACGCTAGCCCATGTTCCATTGCTGAGACTGCTCCTTTA  242
      || |||||||| ||||||||||||| |||| |||||||||||||||||||
seq2  TG-AGCCATGC-ACGCTAGCCCATG-TCCA-TGCTGAGACTGCTCCTTTA  232

seq1  TGAACTGTGGGTGGTTGAGATCACACAGTCACATCGATGGGACAAAATGC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGTGGGTGGTTGAGATCACACAGTCACATCGATGGGACAAAATGC  282

seq1  CCTCTGCCTTCTTTCTTTTTCCTCACTGGCTAAGTCTGTAGGAGCGAGGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTTCTTTCTTTTTCCTCACTGGCTAAGTCTGTAGGAGCGAGGA  332

seq1  CGGTGATGTCATGGTGACATCATGGTGATATCATGGTCCTACTTTTGTTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGATGTCATGGTGACATCATGGTGATATCATGGTCCTACTTTTGTTT  382

seq1  TTCTGAAATTCAGAAGTAGTAGAGTAACCTAAGAGAGAGAACATTGTCCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAATTCAGAAGTAGTAGAGTAACCTAAGAGAGAGAACATTGTCCA  432

seq1  TCTCCCACTAACCATGTCAGTTATTGAGAAGAGATGTGTTTGTAATAGCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACTAACCATGTCAGTTATTGAGAAGAGATGTGTTTGTAATAGCC  482

seq1  AGCTCTTAGCTACTCCTTCCTTTTCCATTTCTACAGTTTCACATTACAAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTAGCTACTCCTTCCTTTTCCATTTCTACAGTTTCACATTACAAG  532

seq1  AAGAGAAACACCTCAAAGCCTGTGGGGGACGATAGAATAATGGGAAATGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAACACCTCAAAGCCTGTGGGGGACGATAGAATAATGGGAAATGA  582

seq1  GAGACGTAGACAGGGCAGGAGTCTATGTTGGGTCCCATTTGGGTCAGAGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGTAGACAGGGCAGGAGTCTATGTTGGGTCCCATTTGGGTCAGAGG  632

seq1  TCAGTAGCACCTGGACTGGGATTTTTCTCTTCCAGCTCCTCATTGTGCTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGCACCTGGACTGGGATTTTTCTCTTCCAGCTCCTCATTGTGCTT  682

seq1  TGGGTTGAAGAAGCTCCAAGTAGCCTCCATCTACCCCTGGAAAATGCCTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGAAGAAGCTCCAAGTAGCCTCCATCTACCCCTGGAAAATGCCTT  732

seq1  TTGGCAGCATGTCAGATACGCTTTGCTGGGTGCTGCCTTAACTCTAGGGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGCATGTCAGATACGCTTTGCTGGGTGCTGCCTTAACTCTAGGGC  782

seq1  TTGGAGGGTGGGTCAAAGATAGGAGGATACCGAGGGCTCCATCACACTCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGGTGGGTCAAAGATAGGAGGATACCGAGGGCTCCATCACACTCC  832

seq1  ACTGCTGGAAAGTATAGCCCAATACAGCATGCTAGAATTTTATATTGTAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGAAAGTATAGCCCAATACAGCATGCTAGAATTTTATATTGTAT  882

seq1  CTGTTACTTGACATAAGAGGAACCTACAGGTGATTTAAAGACTATGAGAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACTTGACATAAGAGGAACCTACAGGTGATTTAAAGACTATGAGAA  932

seq1  GACATGTGAGTACAGCGCCAATGTACATAATGGATGGAGCACCTGGGATT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTGAGTACAGCGCCAATGTACATAATGGATGGAGCACCTGGGATT  982

seq1  TGCGATCTGCAGGGCCTCCTGGCAGCAGTGGTGTTACTCAGCTATCTTTA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATCTGCAGGGCCTCCTGGCAGCAGTGGTGTTACTCAGCTATCTTTA  1032

seq1  GGGACAGGTGCCTAACCAGAGAGCTACAGGGCTCTATTACCCCATGCCTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGGTGCCTAACCAGAGAGCTACAGGGCTCTATTACCCCATGCCTG  1082

seq1  ACATTCTGACTGACAGTCCCTTTGAACTGAGGGCACAATGCTACCAGGCC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGACTGACAGTCCCTTTGAACTGAGGGCACAATGCTACCAGGCC  1132

seq1  AGGGGATGGTCCCAGTGTTTCCTTGCTATTTGCCAGGACTCAGCTTTCTA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATGGTCCCAGTGTTTCCTTGCTATTTGCCAGGACTCAGCTTTCTA  1182

seq1  ATGAAATCTACAGGCCAGTTCTGAGAGTGATGTCTAGAGAATTC  1236
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCTACAGGCCAGTTCTGAGAGTGATGTCTAGAGAATTC  1226

seq1: chr14_13239489_13240641
seq2: B6Ng01-346J14.g_68_1231

seq1  GAATTCACCCTAAGCACATCTCTTTTAATCCCGATTTTCTTCTCAGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTAAGCACATCTCTTTTAATCCCGATTTTCTTCTCAGTCTG  50

seq1  TATCTTCAAGAAGTACAAGGAGGAAAGAAAATAAATTAATTTTTGCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCAAGAAGTACAAGGAGGAAAGAAAATAAATTAATTTTTGCTTAG  100

seq1  ACCTTGAAATCTTAGGTGCTTCTCTTGATCTGATGTCTAATTTCAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAAATCTTAGGTGCTTCTCTTGATCTGATGTCTAATTTCAGAAAG  150

seq1  CACCTTTCTTTCTTTCTCTCTCTCTCCCTTCCTTCCTTCTCTTCCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCTTTCTTTCTCTCTCTCTCCCTTCCTTCCTTCTCTTCCTTCCT  200

seq1  TCTCTCTCTTTCTTTCTTCCTTTCTTTCTTCCTTTCTCCCTTTCTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTTTCTTTCTTCCTTTCTTTCTTCCTTTCTCCCTTTCTTCCTT  250

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCTTTGT  300

seq1  TTTGTTTTGTTTTGTTTTGTTTTGAGGGAGATGCTGAACTAATCACCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTGTTTTGAGGGAGATGCTGAACTAATCACCAAA  350

seq1  GGCGGAGGAAAGGCAAGCTATTACTCCAGCCTGAGCATCCTCCCTTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGAGGAAAGGCAAGCTATTACTCCAGCCTGAGCATCCTCCCTTAGCT  400

seq1  GCTACTTTCAGAACACAAAGCTTATTGTGATCTCTGCTTTTTATTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTTCAGAACACAAAGCTTATTGTGATCTCTGCTTTTTATTTTCTT  450

seq1  TATAAAGCATCGATAATTGACAAGGAGGCAAAGCTTCCTCTCGAATCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGCATCGATAATTGACAAGGAGGCAAAGCTTCCTCTCGAATCTTA  500

seq1  GACTAATGCAATTTTCCTCTAAAAATTTAGCTCCTCTGAAATGATTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATGCAATTTTCCTCTAAAAATTTAGCTCCTCTGAAATGATTTTAA  550

seq1  TCCACTGCTACACTTATTATGATATTCACTTCATTTAAATGTCTGAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGCTACACTTATTATGATATTCACTTCATTTAAATGTCTGAATAT  600

seq1  TTTGTGTCTAAATATTAAAATCTTATTTTTCAGCAAGTGAAAACAGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCTAAATATTAAAATCTTATTTTTCAGCAAGTGAAAACAGTATA  650

seq1  ATTGTGCTTCATTCTTTTTCCCTGAAAAATAAAAAAAGCAGATAAGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCTTCATTCTTTTTCCCTGAAAAATAAAAAAAGCAGATAAGAATG  700

seq1  TTTGTTTGGCATCTAAAAGTACCATGGGGAATGGTCCTGGGATTCGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGCATCTAAAAGTACCATGGGGAATGGTCCTGGGATTCGTCTT  750

seq1  CATCAGACTATTATTTTAAATTGATGAAGTCAGTCTTAAAGATATATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACTATTATTTTAAATTGATGAAGTCAGTCTTAAAGATATATTAT  800

seq1  TGAATATATAATGTTGGTACTTTATAGAAAGAATATATAAAGCAACTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATATAATGTTGGTACTTTATAGAAAGAATATATAAAGCAACTATG  850

seq1  TTACTAAACAGGGAAACTTTCACTGGAAAAAAAATCTGTTTAGGCAGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAACAGGGAAACTTTCACTGGAAAAAAAATCTGTTTAGGCAGTAC  900

seq1  TATATCTAAATGCATTTCTCCAAAATCCTACAGAATGCTTGATTTTTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTAAATGCATTTCTCCAAAATCCTACAGAATGCTTGATTTTTTAA  950

seq1  AATGGTAGAGATTAATGTGGAAAGTC-TGCTCTTAAGTTATATAATAAAG  999
      |||||||||||||||||||||||||| ||||  |||||||||||||||||
seq2  AATGGTAGAGATTAATGTGGAAAGTCTTGCTTCTAAGTTATATAATAAAG  1000

seq1  TAAATACACAATTCAGAGCATCACA-CACAG-AGCCCGCACTGCTGCTCT  1047
      ||||||||  ||||||||||||||| ||||| |||| |||||||||||||
seq2  TAAATACATCATTCAGAGCATCACACCACAGAAGCCGGCACTGCTGCTCT  1050

seq1  G-ACAATCT-CCCACAAACCCCCGCTCCCAGCCAAAATACAGCGATGAAG  1095
      | ||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  GAACAATCTCCCCACAAACCCCCGCTCCCAGCCAAAATACAGCGATGGAG  1100

seq1  CAGA-GGAGAAAAAAAGAACAA-GCCCA--GCTCAGAAA-TCA-CCGGCA  1139
      |||| ||||||||||||||||| |||||   |||||||| ||| ||||||
seq2  CAGAGGGAGAAAAAAAGAACAAGGCCCAAGCCTCAGAAATTCACCCGGCA  1150

seq1  AGCAACCTTGTTAC  1153
      ||||||||||||||
seq2  AGCAACCTTGTTAC  1164