BAC Information

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BAC

Clone NameB6Ng01-346O16
Chromosome14 (Build37)
Map Location 111,774,857 - 111,923,767
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346O16.bB6Ng01-346O16.g
ACCGA128680GA128681
length1,1931,180
definitionB6Ng01-346O16.b B6Ng01-346O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,922,569 - 111,923,767)(111,774,857 - 111,776,050)
sequence
gaattcaatgctgcattagtcaattgatgtcctttctcacttagtagtct
gcttagcacctcttagcactgtgaaatttagacagcagggaatgcctact
ggacctttaaagaatggatttcttctgtgcctcgctaaaaaaataatgtg
tgacatcttcatcaataggtgttttatacacttatggtggacaacaagga
gcagtagcaatacatgttttgattttcaatgcctctggggtctcttttgc
cagtaacacttatgaagacaacttgtgcctggcacagaaactttgatcta
gtaaacataccatttaggtgcagctattcactgcatctgtttactaatgc
tggatacctctgctcaaaatctgtttttaaaatgtcatatttttaactag
cttacaatttgctggaatctcataatattacttgacaatctgtaattggt
atgtttaagtgacacatacactttgagacagtgccctattcttgtctcct
ctccagtctggtttcctctctctgtcttttatcacgactacagatccttt
tggttaaaaatattctgaagcctaatttgcctggtgaacccacctgaatc
ctcttacaaagccttttcatttttgtcacgatggaatattttattacagc
attctgggtttgatctgtttctatatgttgagttttcctggccacaactt
tcatttagatagaaaaagactatctttcttctcattttctcatttatgtt
tatgaaatccaactcatcattgagcctatttcgtcatcttgtcgtgactt
tccaaataaggatctcattactaacattttgttagagaatttttgatgaa
aagaaaaccagagtctatttgatgcattggcaaacttcctagtgaaatta
tattttcttccagttttttatgtgtatattatgaaaagtcattttcagct
ttctgaaaggactttctaatgacattgaaatttcatctcattttatctgt
tagttctttagttttttgtcaaatttgtcaaatatcactataaaagatat
catccaataaggagtgattctacaccaccagtaatatcaaactcagaaca
tggatgcagaagatcagagtttcatgcctccctctgtggattacatagtg
acagctggatctaactggtagcttgactcaatgatgcataatt

gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaaccaggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggttcgggatcttcct
gagaagcaagcaataaagcttttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcgggacgcaatattgatctattgatataactga
taattaagaggaaaggggagaagccgaacccatgggtttcattaagaaag
tccctgattcacacatacatgcagctactcattcattagcatgacaggag
atgttataaaatacatgactcagcagtaaatacacagaatcatgaaaata
cagaaagaaaaattcatcacatatagaacatatgtcataggaggaaactc
attaaaaattctatttggtcaagtatgggcatagtgaaattctgtatgtt
agattgagggtacgtaatcctttcctaagagcaccttataaggatggcta
aacggaactatttctgaataatgcctagaaactggaaaagagaatgaatc
atgaacggaagttaaaacagcagtgaaaatacagcattttgtgcaaaaca
tggcattaaggaaatatagactcactcaggaaatgaaaggcatttaattt
tgtgaataagagattacttgtagggttgatttgtaaaaggcaggaaattg
gtttggccagaaaggcagagaaacaggggccacattattcaaggtggcat
aagtcttgctaaagatgtagggcatcctttttaagaagcaaggagaactc
ttgaaggtttttatgaagtcaaattccatttaatttgcattgaatgatgt
tctttccatgttgtttggaaaatggattagaaagaattaagacatagttt
aaaaacataattagtaaaaggttgcaacatcgaagtaataaatgacattt
atgtagattgaaagtgaccctttcagcagaaagcacggataactctgaga
aatgcaaccagaaatgagaaatgatatatttgaagaaaagaatgaaagaa
atcatctttccttgagaattattgaattctgagtgccttcttcatggaac
aagtgtggaaacctttattctctggagggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111922569_111923767
seq2: B6Ng01-346O16.b_43_1235 (reverse)

seq1  AATTATTCATCATTTTTGAGTCAGGCTCACAAGTAGATCAGGCTGTCACT  50
      |||||| |||||   |||||||| |||  ||  ||||||  |||||||||
seq2  AATTATGCATCA---TTGAGTCAAGCTACCAGTTAGATCCAGCTGTCACT  47

seq1  ATGT-ATCCACAGGAGGAGGCATTGAACTCTTGATCCTTCTGCATCCATG  99
      |||| ||||||||  ||||||||  ||||| |||| ||||||||||||||
seq2  ATGTAATCCACAGAGGGAGGCATGAAACTC-TGAT-CTTCTGCATCCATG  95

seq1  TCTTGAGTTTTGATATTACTGGT-GTGTAGAATCACTCCTTATTGGATGA  148
      |  |||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCTGAG-TTTGATATTACTGGTGGTGTAGAATCACTCCTTATTGGATGA  144

seq1  TATCTTTTATAGTGATATTTTGAACAAATTTGACAAAAACTAAAAGAACT  198
      ||||||||||||||||||||   ||||||||||||||||   ||||||||
seq2  TATCTTTTATAGTGATATTT--GACAAATTTGACAAAAAACTAAAGAACT  192

seq1  AACAGATAAAATGAGATGAAATTTCAATGTCATTAGAAAGTCCTTTCAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATAAAATGAGATGAAATTTCAATGTCATTAGAAAGTCCTTTCAGA  242

seq1  AAGCTGAAAATGACTTTTCATAATATACACATAAAAAACTGGAAGAAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAAAATGACTTTTCATAATATACACATAAAAAACTGGAAGAAAAT  292

seq1  ATAATTTCACTAGGAAGTTTGCCAATGCATCAAATAGACTCTGGTTTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCACTAGGAAGTTTGCCAATGCATCAAATAGACTCTGGTTTTCT  342

seq1  TTTCATCAAAAATTCTCTAACAAAATGTTAGTAATGAGATCCTTATTTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAAAAATTCTCTAACAAAATGTTAGTAATGAGATCCTTATTTGG  392

seq1  AAAGTCACGACAAGATGACGAAATAGGCTCAATGATGAGTTGGATTTCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACGACAAGATGACGAAATAGGCTCAATGATGAGTTGGATTTCAT  442

seq1  AAACATAAATGAGAAAATGAGAAGAAAGATAGTCTTTTTCTATCTAAATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAATGAGAAAATGAGAAGAAAGATAGTCTTTTTCTATCTAAATG  492

seq1  AAAGTTGTGGCCAGGAAAACTCAACATATAGAAACAGATCAAACCCAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGTGGCCAGGAAAACTCAACATATAGAAACAGATCAAACCCAGAA  542

seq1  TGCTGTAATAAAATATTCCATCGTGACAAAAATGAAAAGGCTTTGTAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAATAAAATATTCCATCGTGACAAAAATGAAAAGGCTTTGTAAGA  592

seq1  GGATTCAGGTGGGTTCACCAGGCAAATTAGGCTTCAGAATATTTTTAACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAGGTGGGTTCACCAGGCAAATTAGGCTTCAGAATATTTTTAACC  642

seq1  AAAAGGATCTGTAGTCGTGATAAAAGACAGAGAGAGGAAACCAGACTGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATCTGTAGTCGTGATAAAAGACAGAGAGAGGAAACCAGACTGGA  692

seq1  GAGGAGACAAGAATAGGGCACTGTCTCAAAGTGTATGTGTCACTTAAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGACAAGAATAGGGCACTGTCTCAAAGTGTATGTGTCACTTAAACA  742

seq1  TACCAATTACAGATTGTCAAGTAATATTATGAGATTCCAGCAAATTGTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATTACAGATTGTCAAGTAATATTATGAGATTCCAGCAAATTGTAA  792

seq1  GCTAGTTAAAAATATGACATTTTAAAAACAGATTTTGAGCAGAGGTATCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTAAAAATATGACATTTTAAAAACAGATTTTGAGCAGAGGTATCC  842

seq1  AGCATTAGTAAACAGATGCAGTGAATAGCTGCACCTAAATGGTATGTTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAGTAAACAGATGCAGTGAATAGCTGCACCTAAATGGTATGTTTA  892

seq1  CTAGATCAAAGTTTCTGTGCCAGGCACAAGTTGTCTTCATAAGTGTTACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCAAAGTTTCTGTGCCAGGCACAAGTTGTCTTCATAAGTGTTACT  942

seq1  GGCAAAAGAGACCCCAGAGGCATTGAAAATCAAAACATGTATTGCTACTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGAGACCCCAGAGGCATTGAAAATCAAAACATGTATTGCTACTG  992

seq1  CTCCTTGTTGTCCACCATAAGTGTATAAAACACCTATTGATGAAGATGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGTTGTCCACCATAAGTGTATAAAACACCTATTGATGAAGATGTC  1042

seq1  ACACATTATTTTTTTAGCGAGGCACAGAAGAAATCCATTCTTTAAAGGTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTATTTTTTTAGCGAGGCACAGAAGAAATCCATTCTTTAAAGGTC  1092

seq1  CAGTAGGCATTCCCTGCTGTCTAAATTTCACAGTGCTAAGAGGTGCTAAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGCATTCCCTGCTGTCTAAATTTCACAGTGCTAAGAGGTGCTAAG  1142

seq1  CAGACTACTAAGTGAGAAAGGACATCAATTGACTAATGCAGCATTGAATT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTACTAAGTGAGAAAGGACATCAATTGACTAATGCAGCATTGAATT  1192

seq1  C  1199
      |
seq2  C  1193


seq1: chr14_111774857_111776050
seq2: B6Ng01-346O16.g_68_1247

seq1  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50

seq1  GGCAAGCAACGAACCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCAACGAACCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100

seq1  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTCGGGATCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTCGGGATCTTCCT  150

seq1  GAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGT  200

seq1  CTTTCTTGCCGGTCGAGCGGGACGCAATATTGATCTATTGATATAACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGCCGGTCGAGCGGGACGCAATATTGATCTATTGATATAACTGA  250

seq1  TAATTAAGAGGAAAGGGGAGAAGCCGAACCCATGGGTTTCATTAAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAGAGGAAAGGGGAGAAGCCGAACCCATGGGTTTCATTAAGAAAG  300

seq1  TCCCTGATTCACACATACATGCAGCTACTCATTCATTAGCATGACAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATTCACACATACATGCAGCTACTCATTCATTAGCATGACAGGAG  350

seq1  ATGTTATAAAATACATGACTCAGCAGTAAATACACAGAATCATGAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATAAAATACATGACTCAGCAGTAAATACACAGAATCATGAAAATA  400

seq1  CAGAAAGAAAAATTCATCACATATAGAACATATGTCATAGGAGGAAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAAAATTCATCACATATAGAACATATGTCATAGGAGGAAACTC  450

seq1  ATTAAAAATTCTATTTGGTCAAGTATGGGCATAGTGAAATTCTGTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATTCTATTTGGTCAAGTATGGGCATAGTGAAATTCTGTATGTT  500

seq1  AGATTGAGGGTACGTAATCCTTTCCTAAGAGCACCTTATAAGGATGGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGAGGGTACGTAATCCTTTCCTAAGAGCACCTTATAAGGATGGCTA  550

seq1  AACGGAACTATTTCTGAATAATGCCTAGAAACTGGAAAAGAGAATGAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAACTATTTCTGAATAATGCCTAGAAACTGGAAAAGAGAATGAATC  600

seq1  ATGAACGGAAGTTAAAACAGCAGTGAAAATACAGCATTTTGTGCAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACGGAAGTTAAAACAGCAGTGAAAATACAGCATTTTGTGCAAAACA  650

seq1  TGGCATTAAGGAAATATAGACTCACTCAGGAAATGAAAGGCATTTAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTAAGGAAATATAGACTCACTCAGGAAATGAAAGGCATTTAATTT  700

seq1  TGTGAATAAGAGATTACTTGTAGGGTTGATTTGTAAAAGGCAGGAAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATAAGAGATTACTTGTAGGGTTGATTTGTAAAAGGCAGGAAATTG  750

seq1  GTTTGGCCAGAAAGGCAGAGAAACAGGGGCCACATTATTCAAGGTGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCCAGAAAGGCAGAGAAACAGGGGCCACATTATTCAAGGTGGCAT  800

seq1  AAGTCTTGCTAAAGATGTAGGGCATCCTTTTTAAGAAGCAAGGAGAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGCTAAAGATGTAGGGCATCCTTTTTAAGAAGCAAGGAGAACTC  850

seq1  TTGAAGGTTTTTATGAAGTCAAATTCCATTTAATTTGCATTTGAAATGAT  900
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  TTGAAGGTTTTTATGAAGTCAAATTCCATTTAATTTGCATT--GAATGAT  898

seq1  GTTCTTTCCATGTTGTTTGGAAAATGGATTAGAAAGAATTAAAGACATAG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTCTTTCCATGTTGTTTGGAAAATGGATTAGAAAGAATT-AAGACATAG  947

seq1  TTTAAAAAACATAATTAGTAAAAGGTTGCAACAATCGAAGTAATAAATGA  1000
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTT-AAAAACATAATTAGTAAAAGGTTGCAAC-ATCGAAGTAATAAATGA  995

seq1  CATTTATGTAGATTTGAAAGTGACCCTTCCAGCAGGAAAGCACGGATAAA  1050
      |||||||||||| ||||||||||||||| ||||| |||||||||||| ||
seq2  CATTTATGTAGA-TTGAAAGTGACCCTTTCAGCA-GAAAGCACGGAT-AA  1042

seq1  CTCTGAGGAAAATGCAAACCAGAAAATGAGGAAAATGATATATTTTGAAA  1100
      |||||||  |||||| |||||| |||||||  |||||||||| |||||  
seq2  CTCTGAG--AAATGC-AACCAG-AAATGAG--AAATGATATA-TTTGA--  1083

seq1  GAAAAAAGAATTGAAAAGAAATTCAATCTTTCCCTGAGGAAAATTAATTG  1150
       | ||||||||   ||||||||   |||||||| ||||   |||| ||||
seq2  -AGAAAAGAAT--GAAAGAAAT--CATCTTTCCTTGAG---AATT-ATTG  1124

seq1  AATTCT-AGTG-CTTC-TCAT-GAACATGT---GAAACC--TATTCT---  1188
      |||||| |||| |||| |||| ||||| ||   ||||||  ||||||   
seq2  AATTCTGAGTGCCTTCTTCATGGAACAAGTGTGGAAACCTTTATTCTCTG  1174

seq1  GAGGGC  1194
      ||||||
seq2  GAGGGC  1180


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