BAC Information

Click to search

BAC

Clone NameB6Ng01-349A16
Chromosome14 (Build37)
Map Location 70,223,119 - 70,224,323
singlet/doubletsinglet
Overlap genenone
Upstream geneAdam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701
Downstream gene1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349A16.bB6Ng01-349A16.g
ACCGA130147GA130148
length1,1911,202
definitionB6Ng01-349A16.b B6Ng01-349A16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttaatcaccaaattccttcgtaattttgaaaaagacagaaga
gtcggttcatttaaccagcacaatttagattgttatcctagctgtcttca
aagtacagtgctccaccgatgtccagtgccaagttttttcaccaaacaaa
ctctgtagatatttaaaattttggctctacattccaaggaatctaatctc
cctacagctttgtgtgacacctagaaacacctgagtcccaggttacaacg
tgggtgtttcaatttgattactgttaaatgcacccagaccccataccctg
tcaccctaaaccaatatttttaaagtttgctcacatctcctaatttaact
ttctcttttagcttcagccaaacaaaagaaaacgctaaaatgctctgggt
cagctttttcctggtatcatcttttatctgttgtaaagcttaaagctaaa
gctgctttctttttcttttctttctttcttttttttttttttccttgcag
cggtctcattttcttttatacgcaaatcataaatgcctggcataaggagt
tctgtaattcttagagacaggagtttctgcaaacacagttgcggggaatt
ggctctttaagtcgggttgtggcgacaattattttaaaagctgggttgtg
ggagttaagaggaggtgcagtcagctggtcccagtgtggaaccctccagt
gcagcaggaagcccctcccaccctctcatcccccaatcaatcctttgctt
atctggagctgactaggtagggcaggcccctcgagactgttcaagttgtc
tgattttttttagagttgattctttcgccaaccacagtcatttgagaaag
ccaccggatctctaccgggaaccttttaagcagtggccagctcagcccct
tggcctcgttttgggcaaggctagaatggataagcaggcaggggctggtc
tgcaaagcccacccgagtttgcctgcagagctcacgctgcacagcggtca
gctcacacactacgccagtgccagctctgactctcttggcccggagccga
gttagctgagtggctagctgcagcggccttgctgtgctctcgctcgggcc
tcagcgttctgaccacttctgcccagtacccagtcctgcctgtactcaga
actgacctcgagcccatgcccttcatgggtctctaagtccc
gaattccagtggcctagagactgtttttgtggtatttggggaagaatgtg
gctgctttttgccattgtctgaagagtctgcctggggctaaagtgaagag
atttagattaattgctttgaaaaaagaagtctcaaaacagcctggtgtaa
attctgtgtggttactaaagttcactcttatgaagagctgaatcctgtgt
tcaaggagattacattgaattaagggagtagtgaccttggggcaagatcc
cacccagctaaatttaggtccaggcatggtagtacaaacctttaattcta
ggaggcaaagacaagcagatctcgagttcaaagccagtctagaacagaac
aaattctagctaggtgaagaaaaacttaaatccaggcttggtggaccaca
cctttaatcccagtacttaggagacaggcgtgcagatctctgagttcaaa
gtcagtctgcagaacaagttccaggacacccaagcttaggcagtgaagca
gttggaaaacagaaagctggtgataatgtagtagaataagaggaccatgt
tccagttccaccaagcagcagaactcggcagctttggccacgtggctctg
gctttaaaatccagaatagaagggattatggggacaattgatgctggtta
gctggagctaagaaattagtagtgattagaaagagaccagcatcactgag
gtgaaatcctctgggaaatgttttctgggagcacaaagaagctgttccag
aaatagcccaggttgtacctcatgctgcagctgtacttgataatgtgtaa
gagtcaccatgaaggcatgaagggggtcatgaagagtagctgaggctcaa
cattgtgagagaggccatggaaggccatgggtgaaggtgcagcctcagtt
gcagttgatggccaagactgaaggggtcatgcaaaggagttgaggcttag
caccatgaagaagagtctatgagagcgctattggtgaagccttgatgcag
cagagatattggagatgccaataccatgggaatgattaccaagaacaaca
gcagcagtggaatggatcactgagttagtggcttacagagggccagaagc
ttgagaattgacacttagcctttgaggacctaatcacggttgaatccaga
acattggaaacacagaagccgtagacattgaagatgttgtctcgtattga
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_70223119_70224323
seq2: B6Ng01-349A16.b_45_1235 (reverse)

seq1  GGGACTTTGAGAACCCAATGAAGAGGCATGGGGCTCGAGGTCGAGTGCTG  50
      ||||||| ||||  || |||||| ||||| |||||||||||| ||| |||
seq2  GGGACTTAGAGA--CCCATGAAG-GGCAT-GGGCTCGAGGTC-AGTTCTG  45

seq1  AGGTTCAGGCA-GACTGTGGTACTTGGGCAGAAAGTGGTGCAG-ACGCTG  98
      | || |||||| ||||| ||||| ||||||| ||||||| ||| ||||||
seq2  A-GTACAGGCAGGACTG-GGTAC-TGGGCAG-AAGTGGT-CAGAACGCTG  90

seq1  AGGCCCGGGGCGAGAGCAACCAGCAAGGCCGCTGCAGCTAG-CACTCAGC  147
      |||||| | |||||||||  ||||||||||||||||||||| ||||||||
seq2  AGGCCC-GAGCGAGAGCA--CAGCAAGGCCGCTGCAGCTAGCCACTCAGC  137

seq1  TAACTCGGCTCCGGGCCAAGGAGAGGCCAGGAGCTGGCACTGGCGGTGTG  197
      ||||||||||||||||||| ||||| |   |||||||||||||||  |||
seq2  TAACTCGGCTCCGGGCCAA-GAGAGTC--AGAGCTGGCACTGGCGTAGTG  184

seq1  TGTGAGCTGGCCGCTGTGCAGCGTGAGCTCTGCAGGGCAAACTCGGGGTG  247
      ||||||||| |||||||||||||||||||||||| ||||||||| |||||
seq2  TGTGAGCTGACCGCTGTGCAGCGTGAGCTCTGCA-GGCAAACTC-GGGTG  232

seq1  GGCTTTGCAGACCAGCCCCTGCCTGCTTATCCATTCTAGCCTTGCCC-AA  296
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGCTTTGCAGACCAGCCCCTGCCTGCTTATCCATTCTAGCCTTGCCCAAA  282

seq1  ACGAGGCCAAGGGGCCTGAGCTGGCCACTGCTT-AAAGGTTCCCGGTAGA  345
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  ACGAGGCCAAGGGG-CTGAGCTGGCCACTGCTTAAAAGGTTCCCGGTAGA  331

seq1  GATCCGGTGGCTTTCTCAAATGACTGTGGTTGGCGAAAGAATCAACTCTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCGGTGGCTTTCTCAAATGACTGTGGTTGGCGAAAGAATCAACTCTA  381

seq1  AAAAAAATCAGACAACTTGAACAGTCTCGAGGGGCCTGCCCTACCTAGTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCAGACAACTTGAACAGTCTCGAGGGGCCTGCCCTACCTAGTC  431

seq1  AGCTCCAGATAAGCAAAGGATTGATTGGGGGATGAGAGGGTGGGAGGGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGATAAGCAAAGGATTGATTGGGGGATGAGAGGGTGGGAGGGGC  481

seq1  TTCCTGCTGCACTGGAGGGTTCCACACTGGGACCAGCTGACTGCACCTCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTGCACTGGAGGGTTCCACACTGGGACCAGCTGACTGCACCTCC  531

seq1  TCTTAACTCCCACAACCCAGCTTTTAAAATAATTGTCGCCACAACCCGAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTCCCACAACCCAGCTTTTAAAATAATTGTCGCCACAACCCGAC  581

seq1  TTAAAGAGCCAATTCCCCGCAACTGTGTTTGCAGAAACTCCTGTCTCTAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGCCAATTCCCCGCAACTGTGTTTGCAGAAACTCCTGTCTCTAA  631

seq1  GAATTACAGAACTCCTTATGCCAGGCATTTATGATTTGCGTATAAAAGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACAGAACTCCTTATGCCAGGCATTTATGATTTGCGTATAAAAGAA  681

seq1  AATGAGACCGCTGCAAGGAAAAAAAAAAAAAAGAAAGAAAGAAAAGAAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACCGCTGCAAGGAAAAAAAAAAAAAAGAAAGAAAGAAAAGAAAA  731

seq1  AGAAAGCAGCTTTAGCTTTAAGCTTTACAACAGATAAAAGATGATACCAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGCTTTAGCTTTAAGCTTTACAACAGATAAAAGATGATACCAG  781

seq1  GAAAAAGCTGACCCAGAGCATTTTAGCGTTTTCTTTTGTTTGGCTGAAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGCTGACCCAGAGCATTTTAGCGTTTTCTTTTGTTTGGCTGAAGC  831

seq1  TAAAAGAGAAAGTTAAATTAGGAGATGTGAGCAAACTTTAAAAATATTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGAAAGTTAAATTAGGAGATGTGAGCAAACTTTAAAAATATTGG  881

seq1  TTTAGGGTGACAGGGTATGGGGTCTGGGTGCATTTAACAGTAATCAAATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGTGACAGGGTATGGGGTCTGGGTGCATTTAACAGTAATCAAATT  931

seq1  GAAACACCCACGTTGTAACCTGGGACTCAGGTGTTTCTAGGTGTCACACA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACCCACGTTGTAACCTGGGACTCAGGTGTTTCTAGGTGTCACACA  981

seq1  AAGCTGTAGGGAGATTAGATTCCTTGGAATGTAGAGCCAAAATTTTAAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTAGGGAGATTAGATTCCTTGGAATGTAGAGCCAAAATTTTAAAT  1031

seq1  ATCTACAGAGTTTGTTTGGTGAAAAAACTTGGCACTGGACATCGGTGGAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAGAGTTTGTTTGGTGAAAAAACTTGGCACTGGACATCGGTGGAG  1081

seq1  CACTGTACTTTGAAGACAGCTAGGATAACAATCTAAATTGTGCTGGTTAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTACTTTGAAGACAGCTAGGATAACAATCTAAATTGTGCTGGTTAA  1131

seq1  ATGAACCGACTCTTCTGTCTTTTTCAAAATTACGAAGGAATTTGGTGATT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCGACTCTTCTGTCTTTTTCAAAATTACGAAGGAATTTGGTGATT  1181

seq1  AAATGAATTC  1205
      ||||||||||
seq2  AAATGAATTC  1191