BAC Information

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BAC

Clone NameB6Ng01-350B14
Chromosome17 (Build37)14 (Build37)
Map Location 3,467,090 - 3,467,28672,574,811 - 72,575,959
singlet/doubletsingletsinglet
Overlap geneTiam2
Upstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144, LOC630810
Downstream geneTfb1m, Cldn20, 1700102H20Rik, Nox3, 4930470H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350B14.bB6Ng01-350B14.g
ACCGA130878GA130879
length4791,146
definitionB6Ng01-350B14.b B6Ng01-350B14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,467,090 - 3,467,286)(72,574,811 - 72,575,959)
sequence
gaattctgtgagtgcgaggacagcctggtctacataccaagctgcaataa
tatgctcagttaaaagaggccagttacataatagagagaccttgtctcaa
aacaaacaaacaaacaaacaaacaaacaaactctcagtatgattctaaca
tatatctactagttcttaaatgaaacatatgggctataatgtgctttgat
gagaatgtgcagctactggaatggaaaccatttagctatttctttaaaaa
ttcaccatataccaactgcatgatttaatagtcctctttccaggcttccc
atttctttagggaaagaaataaaacagtttgtaagatttgcacactagag
gactcatagtagctttggtttgtcaaagccagaaattgaaaacaccccaa
atatctgtctatctatttctctctctctctctctctctctctctctctct
ctctctctctctctctgtgtgtgtgtgtg
gaattcagagctttttctcattggtatacaaaacatttgacttaaataaa
aagcattcgtaggggcttctagttcaagggtgccaagagcctacagcaca
agacagctagtggctttgcatctatggtcaggatatgaaggaagtaagta
accactttctaatggaatttaagacccactccagataaggagattcatgc
ctggtactggaaacttgccaaaattgtgactgggaaaatcatagacaggc
tttaagagagagcccactttttttttcccaagtagatacaacatcaaacg
gccttctaaacacttatctttctacacatagattagtgcagctcttgatt
ctcatcagagtggctttcttttgtagggactccaaactggtcaaagtgtg
gagaatatgtggagtcatcagtcataaatggggtacctatattgtacatt
ctttccatccaaggctgagaaacatcataacagcacacatacaaagagtg
taagaggcacaggccaggaggacttctgagccatggtgtcttctgaatag
gacagatccaatcactcaagaatttacagcacctatagttgcctacacaa
aactcacatgggatcaaaccagtcaacagaggtcctcaaggattgctcaa
catagccatcacctgaaaatccacaactctgcttcatttgttggccagca
tcctcaatgaggggcagcagaggtacacaaatctgagcccaaggttggac
tgggcattgagataaaagcacaaaataagaccgatcctagactctgttca
taatcaatttgtcataggcatttatctcagaaagataaagacactgttca
cactagtgtctctacatgaaggtttgtaagtgactttatttataacaatc
aaagcctggaaatcaattcaaatgtctgtcaatgggcaaatgggttaaaa
tgttgagacatctgtgccaggaactagaacttgtgattaataggactaaa
gtgtggatgtagcacagccagtcctttggatggatgtaaggaaatacaag
taaaaagaaaaacagttcccagaagtacaaacttgtattatttcatttat
aacagccatctggaactagttaacactatagaaatgtaaacaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_3467090_3467286
seq2: B6Ng01-350B14.b_72_530 (reverse)

seq1  CACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GAGAGAGAGAGAGA------------------------------------  64
      |||||||||||| |                                    
seq2  GAGAGAGAGAGAAATAGATAGACAGATATTTGGGGTGTTTTCAATTTCTG  100

seq1  ------------------------------TGTAGT--------------  70
                                    | ||||              
seq2  GCTTTGACAAACCAAAGCTACTATGAGTCCTCTAGTGTGCAAATCTTACA  150

seq1  --------------------------------------------TGGACT  76
                                                   |||||
seq2  AACTGTTTTATTTCTTTCCCTAAAGAAATGGGAAGCCTGGAAAGAGGACT  200

seq1  AGTAGAT------------------TGATTTTTT----------------  92
      | || ||                  ||| |||||                
seq2  ATTAAATCATGCAGTTGGTATATGGTGAATTTTTAAAGAAATAGCTAAAT  250

seq1  --------------------------------------------------  92
                                                        
seq2  GGTTTCCATTCCAGTAGCTGCACATTCTCATCAAAGCACATTATAGCCCA  300

seq1  --TGTT-----------------------TGTT-------TGCTTGGGGT  110
        ||||                       ||||       | ||  | ||
seq2  TATGTTTCATTTAAGAACTAGTAGATATATGTTAGAATCATACTGAGAGT  350

seq1  TT-TTTATTTGTTTGTTTGTTTGT---TTTTGAGACAGGGTTTCTCT-GT  155
      || ||| |||||||||||||||||   |||||||||| ||| |||||  |
seq2  TTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGAGACAAGGTCTCTCTATT  400

seq1  ATAGCCCTGGCTGTCCTGGAACTCA--------------CTT----TGTA  187
      ||    |||||  || |  |||| |              |||    ||||
seq2  ATGTAACTGGC-CTCTTTTAACTGAGCATATTATTGCAGCTTGGTATGTA  449

seq1  GACCAGGCTG  197
      ||||||||||
seq2  GACCAGGCTG  459

seq1: chr14_72574811_72575959
seq2: B6Ng01-350B14.g_68_1213

seq1  GAATTCAGAGCTTTTTCTCATTGGTATACAAAACATTTGACTTAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCTTTTTCTCATTGGTATACAAAACATTTGACTTAAATAAA  50

seq1  AAGCATTCGTAGGGGCTTCTAGTTCAAGGGTGCCAAGAGCCTACAGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCGTAGGGGCTTCTAGTTCAAGGGTGCCAAGAGCCTACAGCACA  100

seq1  AGACAGCTAGTGGCTTTGCATCTATGGTCAGGATATGAAGGAAGTAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTAGTGGCTTTGCATCTATGGTCAGGATATGAAGGAAGTAAGTA  150

seq1  ACCACTTTCTAATGGAATTTAAGACCCACTCCAGATAAGGAGATTCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTCTAATGGAATTTAAGACCCACTCCAGATAAGGAGATTCATGC  200

seq1  CTGGTACTGGAAACTTGCCAAAATTGTGACTGGGAAAATCATAGACAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACTGGAAACTTGCCAAAATTGTGACTGGGAAAATCATAGACAGGC  250

seq1  TTTAAGAGAGAGCCCACTTTTTTTTTCCCAAGTAGATACAACATCAAACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAGAGAGCCCACTTTTTTTTTCCCAAGTAGATACAACATCAAACG  300

seq1  GCCTTCTAAACACTTATCTTTCTACACATAGATTAGTGCAGCTCTTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTAAACACTTATCTTTCTACACATAGATTAGTGCAGCTCTTGATT  350

seq1  CTCATCAGAGTGGCTTTCTTTTGTAGGGACTCCAAACTGGTCAAAGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAGAGTGGCTTTCTTTTGTAGGGACTCCAAACTGGTCAAAGTGTG  400

seq1  GAGAATATGTGGAGTCATCAGTCATAAATGGGGTACCTATATTGTACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATGTGGAGTCATCAGTCATAAATGGGGTACCTATATTGTACATT  450

seq1  CTTTCCATCCAAGGCTGAGAAACATCATAACAGCACACATACAAAGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATCCAAGGCTGAGAAACATCATAACAGCACACATACAAAGAGTG  500

seq1  TAAGAGGCACAGGCCAGGAGGACTTCTGAGCCATGGTGTCTTCTGAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGCACAGGCCAGGAGGACTTCTGAGCCATGGTGTCTTCTGAATAG  550

seq1  GACAGATCCAATCACTCAAGAATTTACAGCACCTATAGTTGCCTACACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATCCAATCACTCAAGAATTTACAGCACCTATAGTTGCCTACACAA  600

seq1  AACTCACATGGGATCAAACCAGTCAACAGAGGTCCTCAAGGATTGCTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACATGGGATCAAACCAGTCAACAGAGGTCCTCAAGGATTGCTCAA  650

seq1  CATAGCCATCACCTGAAAATCCACAACTCTGCTTCATTTGTTGGCCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCATCACCTGAAAATCCACAACTCTGCTTCATTTGTTGGCCAGCA  700

seq1  TCCTCAATGAGGGGCAGCAGAGGTACACAAATCTGAGCCCAAGGTTGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAATGAGGGGCAGCAGAGGTACACAAATCTGAGCCCAAGGTTGGAC  750

seq1  TGGGCATTGAGATAAAAGCACAAAATAAGACCGATCCTAGACTCTGTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTGAGATAAAAGCACAAAATAAGACCGATCCTAGACTCTGTTCA  800

seq1  TAATCAATTTGTCATAGGCATTTATCTCAGAAAGATAAAGACACTGTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAATTTGTCATAGGCATTTATCTCAGAAAGATAAAGACACTGTTCA  850

seq1  CACTAGTGTCTCTACATGAAGGTTTGTAAGTGACTTTATTTATAACAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTGTCTCTACATGAAGGTTTGTAAGTGACTTTATTTATAACAATC  900

seq1  AAAGCCTGG-AATCAATTCAAATGTCTGTCAATGGGCAAAT-GGTTAAAA  948
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  AAAGCCTGGAAATCAATTCAAATGTCTGTCAATGGGCAAATGGGTTAAAA  950

seq1  TGGTGAGACATCTGTGCCAGGAACTAGAACTTGGTGATTAATAGGACTAA  998
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTTGAGACATCTGTGCCAGGAACTAGAACTT-GTGATTAATAGGACTAA  999

seq1  AGTGTTGATGTAGGCAACAGCCAGCCCTTTGGATGGATGTTAGGAAAATT  1048
      ||||| |||||||   |||||||| ||||||||||||||| ||||||  |
seq2  AGTGTGGATGTAG--CACAGCCAGTCCTTTGGATGGATGTAAGGAAA--T  1045

seq1  ACAAGTAAAAAGAAAACCAGTTCCCAGAGTTACAAAC-TGTATTATTTCA  1097
      |||||||||||||||| |||||||||||  ||||||| ||||||||||||
seq2  ACAAGTAAAAAGAAAAACAGTTCCCAGAAGTACAAACTTGTATTATTTCA  1095

seq1  TTTAT-ACAGCATTTCTGACATAG-TAACACTATAGAAATGGTTAAAACA  1145
      ||||| |||||  |   ||  ||| ||||||||||||||||    |||||
seq2  TTTATAACAGCCATCTGGAACTAGTTAACACTATAGAAATG---TAAACA  1142

seq1  AGAG  1149
      ||||
seq2  AGAG  1146