BAC Information

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BAC

Clone NameMSMg01-045H24
Chromosome14 (Build37)
Map Location 47,209,511 - 47,253,236
singlet/doubletdoublet
Overlap genenone
Upstream geneDdhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754
Downstream geneCdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045H24.T7 (MSMg01no045_h24.b1)MSMg01-045H24.TJ (MSMg01no045_h24.g1)
ACCAG276119AG276120
length677680
length of high quality
(start - end)		639 (39 - 677)607 (74 - 680)
definitionCHROMAT_FILE: MSMg01no045_h24.b1 PHD_FILE: MSMg01no045_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:28 2005CHROMAT_FILE: MSMg01no045_h24.g1 PHD_FILE: MSMg01no045_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,209,511 - 47,210,143)(47,252,639 - 47,253,236)
sequence
CATAATTTGCGGCGCTATACGACTCCTATAGGTCAAGATCCGCGGAATTC
TTTCCTCTAGCCACTTTATTTTTGAGATAGGCTCTCTCATTGAACCCAGA
GAGCACCAGTTGGCTAGCCTCGTTAAGAGATCTGCCCACCTTTGCCTGCA
GCTGTTACAGACACACACCACCACGCCAGACTCTTAGGTCTGGATGCAGG
TCCTCATGCTTGCAAGCAGGAACTTTGCCAACAGAGCCATCTCCCCAGCC
CCTCCTATTTCTCTTGCTAGCCTCTGGACTGAAGTGAATGTTTGATGCAG
CTCTAAGAAGATGAGGGAAGGCTGCTGGTTGAAGGGAGAAGAGGTTCCTG
GCTCATAAAAACATACCTATCAGGACACAACACCTTCTTCCAGGGAGCTT
CAGCCCTTAGCTTCTGACCCTTTTCACTGCAATGAAAGGCACTAGTCTTG
GTACAGTTGACAGGTTGAAAGCAGTAGAGGAAACAAGCAGAAAAACTTTG
GTCTGTGAACTTACCAGCCTTAAGGCTGCCTGGGTTCCTTTTGTGGGGAA
TAGGAAGCTTTTTCTCATTGTTGAAGTCACTTTGAGTTAAGCCTTCTTTG
TCCTTGAAGATCTACCACACCAGAGAGGAGAAAGGTGGCCCTGTACAGCA
GCACCCTCATTAGTGTGATGTATCAAG

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAACCGAACGTTGATACAGATCTTGTT
GATAATAAGAAAGTTCTCTCCTGCTCTTCCTAAGGGTCTGAGTGCATGGT
GGGTAGATTGTGTGGACAGCTTGCCTTTTTTCCCTGATCTCTAAGCACAG
GAGTAAGGGAAGCCATCTAAGGAAGGGAGGTGGTGTGGGAAAGAATTGTC
AGGAGAGCATTATGTGACAGCTGATAGCCAGGTCATGACATGGTATGTGA
AACCCAAGGAAAACAATATTCTCAATGCTGAACCATTAATTGGTTGAAGG
ACAGAGTCTCACCTGCGCACGGGAACACTGCAGGAGAAAATATGCACCTT
TCAACAACTTGCATTTTCCCCCCTCTTCCATTTTCTACAGATTGAGGAGA
GTTTCACTTTTTGTTATGTTGTTTTGTTTTTCAAGACAGGGTTTCTCTGT
GTAGCCCCGATTGTCCTGGAACTCACTCTATAGACCATGAACTCAGAGAT
CTACCTGCTTCTGTCTCTTGGGAATAAAGGCTGGCAATGCTGTCCACACC
ATCAACACCTCTACCTCCACCACCACCTGGCCATTTTCTTAATAAAAAGA
TTTAGGTAGAATAAACAATTGCTTGTTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_h24.b1 MSMg01no045_h24.b1 CHROMAT_FILE:
MSMg01no045_h24.b1 PHD_FILE: MSMg01no045_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:28 2005
         (639 letters)



>mm_chr14_47209305_47210343
          Length = 1039

 Score = 1224 bits (633), Expect = 0.0
 Identities = 633/633 (100%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctttcctctagccactttatttttgagataggctctctcattgaacccagagagc 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctttcctctagccactttatttttgagataggctctctcattgaacccagagagc 266

                                                                       
Query: 67  accagttggctagcctcgttaagagatctgcccacctttgcctgcagctgttacagacac 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 accagttggctagcctcgttaagagatctgcccacctttgcctgcagctgttacagacac 326

                                                                       
Query: 127 acaccaccacgccagactcttaggtctggatgcaggtcctcatgcttgcaagcaggaact 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acaccaccacgccagactcttaggtctggatgcaggtcctcatgcttgcaagcaggaact 386

                                                                       
Query: 187 ttgccaacagagccatctccccagcccctcctatttctcttgctagcctctggactgaag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttgccaacagagccatctccccagcccctcctatttctcttgctagcctctggactgaag 446

                                                                       
Query: 247 tgaatgtttgatgcagctctaagaagatgagggaaggctgctggttgaagggagaagagg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgaatgtttgatgcagctctaagaagatgagggaaggctgctggttgaagggagaagagg 506

                                                                       
Query: 307 ttcctggctcataaaaacatacctatcaggacacaacaccttcttccagggagcttcagc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttcctggctcataaaaacatacctatcaggacacaacaccttcttccagggagcttcagc 566

                                                                       
Query: 367 ccttagcttctgacccttttcactgcaatgaaaggcactagtcttggtacagttgacagg 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ccttagcttctgacccttttcactgcaatgaaaggcactagtcttggtacagttgacagg 626

                                                                       
Query: 427 ttgaaagcagtagaggaaacaagcagaaaaactttggtctgtgaacttaccagccttaag 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttgaaagcagtagaggaaacaagcagaaaaactttggtctgtgaacttaccagccttaag 686

                                                                       
Query: 487 gctgcctgggttccttttgtggggaataggaagctttttctcattgttgaagtcactttg 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gctgcctgggttccttttgtggggaataggaagctttttctcattgttgaagtcactttg 746

                                                                       
Query: 547 agttaagccttctttgtccttgaagatctaccacaccagagaggagaaaggtggccctgt 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 agttaagccttctttgtccttgaagatctaccacaccagagaggagaaaggtggccctgt 806

                                            
Query: 607 acagcagcaccctcattagtgtgatgtatcaag 639
           |||||||||||||||||||||||||||||||||
Sbjct: 807 acagcagcaccctcattagtgtgatgtatcaag 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no045_h24.g1 MSMg01no045_h24.g1 CHROMAT_FILE:
MSMg01no045_h24.g1 PHD_FILE: MSMg01no045_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:28 2005
         (607 letters)



>mm_chr14_47252639_47253645
          Length = 1007

 Score = 1156 bits (598), Expect = 0.0
 Identities = 598/598 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaccgaacgttgatacagatcttgttgataataagaaagttctctcctgctcttcctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 caaccgaacgttgatacagatcttgttgataataagaaagttctctcctgctcttcctaa 539

                                                                       
Query: 61  gggtctgagtgcatggtgggtagattgtgtggacagcttgccttttttccctgatctcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gggtctgagtgcatggtgggtagattgtgtggacagcttgccttttttccctgatctcta 479

                                                                       
Query: 121 agcacaggagtaagggaagccatctaaggaagggaggtggtgtgggaaagaattgtcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agcacaggagtaagggaagccatctaaggaagggaggtggtgtgggaaagaattgtcagg 419

                                                                       
Query: 181 agagcattatgtgacagctgatagccaggtcatgacatggtatgtgaaacccaaggaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 agagcattatgtgacagctgatagccaggtcatgacatggtatgtgaaacccaaggaaaa 359

                                                                       
Query: 241 caatattctcaatgctgaaccattaattggttgaaggacagagtctcacctgcgcacggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 caatattctcaatgctgaaccattaattggttgaaggacagagtctcacctgcgcacggg 299

                                                                       
Query: 301 aacactgcaggagaaaatatgcacctttcaacaacttgcattttcccccctcttccattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aacactgcaggagaaaatatgcacctttcaacaacttgcattttcccccctcttccattt 239

                                                                       
Query: 361 tctacagattgaggagagtttcactttttgttatgttgttttgtttttcaagacagggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tctacagattgaggagagtttcactttttgttatgttgttttgtttttcaagacagggtt 179

                                                                       
Query: 421 tctctgtgtagccccgattgtcctggaactcactctatagaccatgaactcagagatcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tctctgtgtagccccgattgtcctggaactcactctatagaccatgaactcagagatcta 119

                                                                       
Query: 481 cctgcttctgtctcttgggaataaaggctggcaatgctgtccacaccatcaacacctcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 cctgcttctgtctcttgggaataaaggctggcaatgctgtccacaccatcaacacctcta 59

                                                                     
Query: 541 cctccaccaccacctggccattttcttaataaaaagatttaggtagaataaacaattg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  cctccaccaccacctggccattttcttaataaaaagatttaggtagaataaacaattg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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