Query= MSMg01no045_l22.b1 MSMg01no045_l22.b1 CHROMAT_FILE:
MSMg01no045_l22.b1 PHD_FILE: MSMg01no045_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:46 2005
(540 letters)
>mm_chr14_69258541_69259484
Length = 944
Score = 926 bits (479), Expect = 0.0
Identities = 524/541 (96%), Gaps = 8/541 (1%)
Strand = Plus / Plus
Query: 6 gaattccaaag-aaaaaaccagaaaaccgtttaaccagggcttctagtatccagtgacca 64
||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccaaagaaaaaaagcagaaaacagtttaaccagggcttctagtatccagtgacca 265
Query: 65 accagaagagggtgaccagcaaggcgcttcagaaagccaacgcagcagcatattgggaaa 124
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 266 accagaagagggtgaccagcaaggcgcttcagaaagccaa-gcagcagcacattgggaaa 324
Query: 125 gcatgaccacttctacatggcacccaaagactcgagatggaagaccagaggctggtgcca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcatgaccacttctacatggcacccaaagactcgagatggaagaccagaggctggtgcca 384
Query: 185 accagaaccagaggtatattaagagaaacatgtagccagaataagtttgtctgggttcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accagaaccagaggtatattaagagaaacatgtagccagaataagtttgtctgggttcct 444
Query: 245 aaataaggctggtgaaatttaattccatggcaaaaagaaacaaccttgggttttcctgtt 304
| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 agataaggctggcaaaatttaattccatggcaaagagaaacaaccttgggttttcctgtt 504
Query: 305 tgcttatttgtttgtttatttggtttagcccttgtttgggtttttttgtttgttttttag 364
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 505 tgcttatttgtttgtttatttggtttagcccttgtttggggttttttgtttgttttttag 564
Query: 365 cttagatggctgaatgattttacttagaaccagtctgcctggtgcttgcagattctgaga 424
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttagatggttgaatgattttacttagaaccagtctgcctggtgcttgcagattctgaga 624
Query: 425 acacttggaagagatagtcaagcaatgaaagtgaaatgacagaaacattttagttg-aca 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 625 acacttggaagagatagtcaagcaatgaaagtgaaatgacagaaacattttagt-gcaca 683
Query: 484 cctcacagctgaatacagctgggtttgttttttt----cttctgtggtcataacaggatt 539
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 684 cctcacagctgaatacagctgggtttgtttttttttttcttctgtggtcataacaggatt 743
Query: 540 c 540
|
Sbjct: 744 c 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 944
Length adjustment: 10
Effective length of query: 530
Effective length of database: 934
Effective search space: 495020
Effective search space used: 495020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_l22.g1 MSMg01no045_l22.g1 CHROMAT_FILE:
MSMg01no045_l22.g1 PHD_FILE: MSMg01no045_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:46 2005
(550 letters)
>mm_chr14_69438059_69439006
Length = 948
Score = 743 bits (384), Expect = 0.0
Identities = 440/468 (94%), Gaps = 18/468 (3%)
Strand = Plus / Minus
Query: 95 ctctctctctctctcattctctctctttctctctctctctctctctctctctctctctct 154
||||||||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||
Sbjct: 946 ctctctctctctctc--tctctctctctctctccctctccctctctctctctctctctct 889
Query: 155 ctctctcacacacacacacac------------acacacacacacatatacatacagaca 202
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 888 ctctctcacacacacacacacacacacacacaaacacacacacacatatacatacagaca 829
Query: 203 tacacacactctctcacacacacacatacacacacactctctctctctcacacacacacg 262
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 828 tacacacactctctcacacacacacatacacacacactctctctctct--cacacacatg 771
Query: 263 cacgcacgcgcatgcatacacatgtatatagacaacaaataaatgaataacaaaaattaa 322
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 cacacacgcgcatgcatacacatgtatatagacaacaaataaatgaataacaaaaattaa 711
Query: 323 aagttgaaactccagattagttttataaatttgtggcaaggcagaaatcagggcatatat 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aagttgaaactccagattagttttataaatttgtggcaaggcagaaatcagggcatatat 651
Query: 383 tcacaaggattgtacaaaacagttttctttgttaatctgttatttagtagtttgtaatct 442
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 650 tcacaaggattgtacaaaacagttttctttgttaatttgttatgtagtagtttgtaatct 591
Query: 443 tcaagttactgtaaaaaaaaaaaaaccttagatactaatcacagcctgtatctatctgct 502
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 590 tcaagttactgtaaaaaaaaaaaa--cttagatactaatcacggcctgtatctatctgct 533
Query: 503 cttgttgtctgttcacggttgacgtatcacctatctgagacctcccgg 550
||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 532 cttgtggtctgttcacggttgacatatcacctatctgagacctcccgg 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 108
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 948
Length adjustment: 10
Effective length of query: 540
Effective length of database: 938
Effective search space: 506520
Effective search space used: 506520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
