BAC Information

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BAC

Clone NameMSMg01-045M14
Chromosome14 (Build37)
Map Location 47,304,824 - 47,420,623
singlet/doubletdoublet
Overlap geneCdkn3, Cnih
Upstream geneEG637379, LOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754
Downstream geneGmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045M14.T7 (MSMg01no045_m14.b1)MSMg01-045M14.TJ (MSMg01no045_m14.g1)
ACCAG276331AG276332
length658653
length of high quality
(start - end)
599 (55 - 653)539 (57 - 595)
definitionCHROMAT_FILE: MSMg01no045_m14.b1 PHD_FILE: MSMg01no045_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:49 2005CHROMAT_FILE: MSMg01no045_m14.g1 PHD_FILE: MSMg01no045_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,304,824 - 47,305,422)(47,420,271 - 47,420,623)
sequence
GCGGCGCTAATACACTCCTATTCCAAGAGGATCCGCGGAATTCCAACCTC
TCACCATTATGAAGATGGAGCACACCAGCAGAACATGCCCAACACTGTCG
CTGCCTCCAGTGACAATTCTCCTGACCTCTGACATTCTAGACAAAGTTTT
CCTGTTTCAAACATCAGATCAATGAAATTGAGGCATGTATTCTTTTGTAT
TGTTTGTGAGACTCAACTGTGTCATGAGGGCTTAGTTTGTCCATGGTCAT
TACTGTGCAACTCTGTTGCGTTATTAGATACCTTGTATGTTTCCATTGCT
CTGTTGACAGGTATTTGCGTAGTAGACAGTTTGGGGCTGTTTCACATACT
CCTGTGATGGACGTTCTGTGGATCTTCTGCTCGGCGCTGCCACACATTTC
TCTGGAAATTATGCCTAGAGCAGTATATATGTTCTCGTACATAATGAAGA
TCTGAAGCGTTTTGTTCTCAAAGCCTTTGGCTTTGTTTCTGCCCCTAAGA
CATATGCCTCTAGCTTAATCCAATCAACTGCTTCCCGTTGTTTTCTAACT
CTAGAACATGCTCTGATTTTTGGAAAACGTTGGGGTGGTGACTTCTGTTT
GGTGACTTCTCTCTGCAAAGAAACTCCTCTGAAGATGAAAACTATCGCCC
AGGGAGCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGTGCACAGCTCATGGCCTTGAGCCTTCTACCGAGTGTCTAGAT
GCTTGTTGGGATTAAGGGTTCTGGCTCTGTGGCCCGTAAGAGGTGACCTT
GGGCTGGAGATGGTGCTGTTAAAGTTGTGTCATTGAGGGGGACTCACATG
CCTCAATGTCTACCAGACTGCCTGTAGGCAAGTCTGTGGGTCTTTTTTTT
TTTTAAATTGATGACTGATGTGAGTAGATTTACCTTACAGCCCACAGTGG
GTGGTGCCACACCTGGGCAAGTGGTTCTGAGTTATATAAGAAAGTAGGTT
GAGCAAGCTCATGAAGAGCAAGCAAGACCACTGTAGTGGCTATTCCTGGT
TGTCAACTTGACAATATTTGGAATGAACTACAATCCGGAATTGGAAGGCT
CACCAGTGACCCTTATCTGGAGGCTTGGAGATCCTTATCTGGATCTTGGT
TTGAAGATCTTGAGCCACAGTGGCTATGGATTCCAGAAGATTGAATCTCC
GAGTTTAAGGAACACACCTTTAATCTGGGCTACACCTTTTGCTGGAGACA
ATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTCCTTCGCCTGCT
TGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_m14.b1 MSMg01no045_m14.b1 CHROMAT_FILE:
MSMg01no045_m14.b1 PHD_FILE: MSMg01no045_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:49 2005
         (599 letters)



>mm_chr14_47304624_47305622
          Length = 999

 Score = 1158 bits (599), Expect = 0.0
 Identities = 599/599 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattatgaagatggagcacaccagcagaacatgcccaacactgtcgctgcctccagtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattatgaagatggagcacaccagcagaacatgcccaacactgtcgctgcctccagtgac 260

                                                                       
Query: 61  aattctcctgacctctgacattctagacaaagttttcctgtttcaaacatcagatcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattctcctgacctctgacattctagacaaagttttcctgtttcaaacatcagatcaatg 320

                                                                       
Query: 121 aaattgaggcatgtattcttttgtattgtttgtgagactcaactgtgtcatgagggctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattgaggcatgtattcttttgtattgtttgtgagactcaactgtgtcatgagggctta 380

                                                                       
Query: 181 gtttgtccatggtcattactgtgcaactctgttgcgttattagataccttgtatgtttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttgtccatggtcattactgtgcaactctgttgcgttattagataccttgtatgtttcc 440

                                                                       
Query: 241 attgctctgttgacaggtatttgcgtagtagacagtttggggctgtttcacatactcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgctctgttgacaggtatttgcgtagtagacagtttggggctgtttcacatactcctg 500

                                                                       
Query: 301 tgatggacgttctgtggatcttctgctcggcgctgccacacatttctctggaaattatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatggacgttctgtggatcttctgctcggcgctgccacacatttctctggaaattatgc 560

                                                                       
Query: 361 ctagagcagtatatatgttctcgtacataatgaagatctgaagcgttttgttctcaaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagagcagtatatatgttctcgtacataatgaagatctgaagcgttttgttctcaaagc 620

                                                                       
Query: 421 ctttggctttgtttctgcccctaagacatatgcctctagcttaatccaatcaactgcttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttggctttgtttctgcccctaagacatatgcctctagcttaatccaatcaactgcttc 680

                                                                       
Query: 481 ccgttgttttctaactctagaacatgctctgatttttggaaaacgttggggtggtgactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccgttgttttctaactctagaacatgctctgatttttggaaaacgttggggtggtgactt 740

                                                                      
Query: 541 ctgtttggtgacttctctctgcaaagaaactcctctgaagatgaaaactatcgcccagg 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtttggtgacttctctctgcaaagaaactcctctgaagatgaaaactatcgcccagg 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no045_m14.g1 MSMg01no045_m14.g1 CHROMAT_FILE:
MSMg01no045_m14.g1 PHD_FILE: MSMg01no045_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:49 2005
         (539 letters)



>mm_chr14_47420271_47421209
          Length = 939

 Score =  683 bits (353), Expect = 0.0
 Identities = 353/353 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgcacagctcatggccttgagccttctaccgagtgtctagatgcttgttgggattaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agtgcacagctcatggccttgagccttctaccgagtgtctagatgcttgttgggattaag 294

                                                                       
Query: 61  ggttctggctctgtggcccgtaagaggtgaccttgggctggagatggtgctgttaaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ggttctggctctgtggcccgtaagaggtgaccttgggctggagatggtgctgttaaagtt 234

                                                                       
Query: 121 gtgtcattgagggggactcacatgcctcaatgtctaccagactgcctgtaggcaagtctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 gtgtcattgagggggactcacatgcctcaatgtctaccagactgcctgtaggcaagtctg 174

                                                                       
Query: 181 tgggtcttttttttttttaaattgatgactgatgtgagtagatttaccttacagcccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tgggtcttttttttttttaaattgatgactgatgtgagtagatttaccttacagcccaca 114

                                                                       
Query: 241 gtgggtggtgccacacctgggcaagtggttctgagttatataagaaagtaggttgagcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 gtgggtggtgccacacctgggcaagtggttctgagttatataagaaagtaggttgagcaa 54

                                                                
Query: 301 gctcatgaagagcaagcaagaccactgtagtggctattcctggttgtcaactt 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  gctcatgaagagcaagcaagaccactgtagtggctattcctggttgtcaactt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)