BAC Information

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BAC

Clone NameMSMg01-045N08
Chromosome14 (Build37)
Map Location 94,497,605 - 94,498,110
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC668566
Downstream geneLOC100043356, LOC100043783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045N08.T7 (MSMg01no045_n08.b1)MSMg01-045N08.TJ (MSMg01no045_n08.g1)
ACCAG276366AG276367
length671676
length of high quality
(start - end)
506 (47 - 552)430 (55 - 484)
definitionCHROMAT_FILE: MSMg01no045_n08.b1 PHD_FILE: MSMg01no045_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:53 2005CHROMAT_FILE: MSMg01no045_n08.g1 PHD_FILE: MSMg01no045_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATTGCGAAGATCCGCGGAATTCCATATAATATACACAGTAGAA
AACTATGGCTAATACAAACGTAATATTTTCACAAACATTATTTCACAAAA
ATGTAATATAGAAATGAATGTGTATTTTGAATATTTGTATAAATATCAAT
TTAGACATTATAATCACATATAATCAACATTGTTAGAATTATGTTTAAAC
AAAAATAATGTCTTTAAAATATACATTTAAGAATTACTATTTTATATAGT
TTTAGTGAGAACCATATTCACTCTTTTGCACTTAACTTGATTATCAATTT
CAAAATCCTAGTAAAAATTATTAGTATTTTTCCTGAATTTTGTGAAAATA
ATTATATATTTCCTAGATAGTTATTTAGGATTTCTTTGCCTTAAGTTACG
TACTGTAACAAATTGACTTAACAGTCTTTTACAGAGTAGTTACTAGGAAT
TAAATAAAAATGTACCAAATATAGGTTCTATAGCATTTGAAAAATGTCTT
TTGTTTTTGAGTATTTTTCTTAAAGAAAATTCCGCCCCACAGCAATAATA
GTATTTTCTTTCCAAGCTATTTTTGCTGTTTTGTCCTTTGCCAACCTGAC
AAGATTTCCAGCATACAAATTGCCAGCCTGCTTAGTTTTGCCAAATCTAA
TTGAAAAGCTCTACCCATGAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGGCTCTAGAGGTATCAGAGGAGAAGAATTTTAATATGTGGACTAT
AGACTATTCTTGTGATATTTTGGTGAAGAATGTGGCTGGTTTTTGATATT
GTACAAAGAGTCTGCCTGAGCCTAAGGTGAAGAGATTTAAATTAATTGCT
TTGACAAAGAAAGTCTCAAAACAGTTTGATATAAATTTTGTTTTGTGGTT
ACTAAATTTCACTCTTATGAATAACATTTTAATGAAAAGTACCAAGCATA
TAAGGAAAAATATGAATTGTATGGTTCAAAGAGCACCAGGAAGTGGAGTG
TGGCTAAATCCTATGTTCAAGGATATTAAATGGAATTAAGGCAGCGATCC
TTTGGGCAATATCTCACCCAGCTAAACAGGTTTAAAAAGTTTAAAAAGGC
ATAGTTATCTCTAAAGATTATTAGGACCTGGTTATTAGTTTCATTTGTAA
ATTTCATCTGTAATGAAATACAATTCACAAATGGAGAGTACAACTATGAT
CCATTTCTTGATGCAAGAAGATAGAGGCTTTTGTTCTGGATCTTTGTGAA
TAGCGGCCATCAAAAGAAAGCCACTGGAATGGTGGTATACATCTTTTGAT
CCAGGCTATCAGATCACTGATTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_n08.b1 MSMg01no045_n08.b1 CHROMAT_FILE:
MSMg01no045_n08.b1 PHD_FILE: MSMg01no045_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:53 2005
         (506 letters)



>mm_chr14_94497405_94498310
          Length = 906

 Score =  978 bits (506), Expect = 0.0
 Identities = 506/506 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaactatggctaatacaaacgtaatattttcacaaacattatttcacaaaaatgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaaactatggctaatacaaacgtaatattttcacaaacattatttcacaaaaatgtaa 260

                                                                       
Query: 61  tatagaaatgaatgtgtattttgaatatttgtataaatatcaatttagacattataatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatagaaatgaatgtgtattttgaatatttgtataaatatcaatttagacattataatca 320

                                                                       
Query: 121 catataatcaacattgttagaattatgtttaaacaaaaataatgtctttaaaatatacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catataatcaacattgttagaattatgtttaaacaaaaataatgtctttaaaatatacat 380

                                                                       
Query: 181 ttaagaattactattttatatagttttagtgagaaccatattcactcttttgcacttaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaagaattactattttatatagttttagtgagaaccatattcactcttttgcacttaac 440

                                                                       
Query: 241 ttgattatcaatttcaaaatcctagtaaaaattattagtatttttcctgaattttgtgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgattatcaatttcaaaatcctagtaaaaattattagtatttttcctgaattttgtgaa 500

                                                                       
Query: 301 aataattatatatttcctagatagttatttaggatttctttgccttaagttacgtactgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataattatatatttcctagatagttatttaggatttctttgccttaagttacgtactgt 560

                                                                       
Query: 361 aacaaattgacttaacagtcttttacagagtagttactaggaattaaataaaaatgtacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacaaattgacttaacagtcttttacagagtagttactaggaattaaataaaaatgtacc 620

                                                                       
Query: 421 aaatataggttctatagcatttgaaaaatgtcttttgtttttgagtatttttcttaaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatataggttctatagcatttgaaaaatgtcttttgtttttgagtatttttcttaaaga 680

                                     
Query: 481 aaattccgccccacagcaataatagt 506
           ||||||||||||||||||||||||||
Sbjct: 681 aaattccgccccacagcaataatagt 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)