BAC Information

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BAC

Clone NameMSMg01-046E16
Chromosome14 (Build37)
Map Location 68,277,369 - 68,443,207
singlet/doubletdoublet
Overlap geneCdca2, Kctd9, Gnrh1, Dock5
Upstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056
Downstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046E16.T7 (MSMg01no046_e16.b1)MSMg01-046E16.TJ (MSMg01no046_e16.g1)
ACCAG276705AG276706
length661687
length of high quality
(start - end)
288 (51 - 338)538 (73 - 610)
definitionCHROMAT_FILE: MSMg01no046_e16.b1 PHD_FILE: MSMg01no046_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:25 2005CHROMAT_FILE: MSMg01no046_e16.g1 PHD_FILE: MSMg01no046_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,442,921 - 68,443,207)(68,277,369 - 68,277,906)
sequence
CAAATTCAAGAAATCCGCGATATTAAACTTATTCCCTCTGGAAGAGCAGC
AAGAGGTCTTAATCATTGCACCATCTCTCTAGCCCCTGACATTCATTTCT
TTTTTTCATGATTTGCCCTGACTCTGACATCCCTAATTAGATTTCCATGT
TGTGTGTGTATATGTAACGGTTTCTAATAACGTCTATTATTTCTGGCACC
ACCACCACATAATCTTACACTTGTAGCAAACATACTTTGGTATCAGTTGG
TATAATCTTTACTCTTTTTGTTCTCCACTGAAGTCACCATTATCTGTTGA
CTTCTCATGTAAGGAGGCCTCTTGTGAGTTTGAAGGACACATCATCAAAA
CGATGTTACCCAGGTAGCATTACGTGTTTATTTGATGTGTTCTGATTGGT
CTCACACGAGCTTCTGTGAGTGTGTTGCAAAGATTATAAGAGAACTGAAA
GTTTGTCCCCTTTTTTCCCCTTACAGGTCTTTGGATGTCCTTAATGTTAC
TGCCAGGTGACCTCCTACAGTTGCATAATATCTTTCTACACCTGGTGAAC
TGATTATCTGCAATATATCGGAAATTGGTTTTTCAAGAAATAATCCTGCC
ATTAACTCACCTTGACTCAAAATTCCATTAGAGATTTCTTTATGCTTTTT
TTGCTTTGATA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGACATTAATATGAGTAAATGCAGGA
AAAGGGACGAAATAAAACATATCCTATTGAAGGAAATGAGGGCTCCTTAA
GAAAGGAAAACACACAGAGGAAGGACACGGGCATATCAGGATACAAATAG
GCCCCCGGGGAGCCGTGGATTCCACAGGCATGATGTTATTGAAGTACTTG
ATACTGGAGTAAGCACCTGCAGAGATGAATTACATCCTTGTTCAGACCAC
TAACGCTGGGTACTGACATCGCATGAAGCGCTTATGGTATATTTCAAATC
CCTTGCCCACTACATAAATATCCAATAAATCAATCAATGATAAAGGACAC
TAGCTAAAAGGCTTAAAATGCTGAACAAGCCACCTCCCCTCCTCAGAGGA
GCCCCGCCACCTTTAATTTATTAGGGGTTTCCTAGTCACTCACACCTCCG
GCCCTGGAGAGGCGAGATGAGTGATTAACACCTTCAGTGCTGGAGTGTGG
AGAGGCAGGAAGGTTGGCGTCGGGCATGGCTTTGCTAACAGCTGGGTTTT
TTAAAAGTCATTATTTGTATATATTTATAGGGTACATTACGATAATTTAA
TACGTATGCACAGTGCATAGTAATCAGAATAGTAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_e16.b1 MSMg01no046_e16.b1 CHROMAT_FILE:
MSMg01no046_e16.b1 PHD_FILE: MSMg01no046_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:25 2005
         (288 letters)



>mm_chr14_68442721_68443408
          Length = 688

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaggtcttaatcattgcaccatctctctagcccctgacattcatttctttttttcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aagaggtcttaatcattgcaccatctctctagcccctgacattcatttctttttttcatg 428

                                                                       
Query: 61  atttgccctgactctgacatccctaattagatttccatgttgtgtgtgtatatgtaacgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 427 atttgccctgactctgacatccctaattagatttccatgttgtgtgtgtatatgtaatgg 368

                                                                       
Query: 121 tttctaataacgtctattatttctggcaccaccaccacataatcttacacttgtagcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 367 tttctaataacgtctattatttctggcaccaccaccacataatcttacacttggagcaaa 308

                                                                       
Query: 181 catactttggtatcagttggtataatctttactctttttgttctccactgaagtcaccat 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 307 catactttggtatcagttgggataatctttactctttttgttctccactgaagtcaccaa 248

                                                          
Query: 241 tatctgttgacttctcatgtaaggaggcctcttgtgagtttgaagga 287
           ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 247 tatctgttgacttctcaggtaaggaggcctcttgtgagtttgaagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no046_e16.g1 MSMg01no046_e16.g1 CHROMAT_FILE:
MSMg01no046_e16.g1 PHD_FILE: MSMg01no046_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:25 2005
         (538 letters)



>mm_chr14_68277169_68278106
          Length = 938

 Score = 1009 bits (522), Expect = 0.0
 Identities = 534/538 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgacattaatatgagtaaatgcaggaaaagggacgaaataaaacatatcctattgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgacattaatatgagtaaatgcaggaaaagggacgaaataaaacatatcctattgaag 260

                                                                       
Query: 61  gaaatgagggctccttaagaaaggaaaacacacagaggaaggacacgggcatatcaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatgagggctccttaagaaaggaaaacacacagaggaaggacacgggcatatcaggat 320

                                                                       
Query: 121 acaaataggcccccggggagccgtggattccacaggcatgatgttattgaagtacttgat 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaataggcccctggggagccgtggattccacaggcatgatgttattgaagtacttgat 380

                                                                       
Query: 181 actggagtaagcacctgcagagatgaattacatccttgttcagaccactaacgctgggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actggagtaagcacctgcagagatgaattacatccttgttcagaccactaacgctgggta 440

                                                                       
Query: 241 ctgacatcgcatgaagcgcttatggtatatttcaaatcccttgcccactacataaatatc 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgacatcgcaggaagcgcttatggtatatttcaaatcccttgcccactacataaatatc 500

                                                                       
Query: 301 caataaatcaatcaatgataaaggacactagctaaaaggcttaaaatgctgaacaagcca 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caataaatcaatcagtgataaaggacactagctaaaaggcttaaaatgctgaacaagcca 560

                                                                       
Query: 361 cctcccctcctcagaggagccccgccacctttaatttattaggggtttcctagtcactca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctcccctcctcagaggagccccgccacctttaatttattaggggtttcctagtcactca 620

                                                                       
Query: 421 cacctccggccctggagaggcgagatgagtgattaacaccttcagtgctggagtgtggag 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacctcctgccctggagaggcgagatgagtgattaacaccttcagtgctggagtgtggag 680

                                                                     
Query: 481 aggcaggaaggttggcgtcgggcatggctttgctaacagctgggttttttaaaagtca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggcaggaaggttggcgtcgggcatggctttgctaacagctgggttttttaaaagtca 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)