BAC Information

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BAC

Clone NameMSMg01-046J15
Chromosome14 (Build37)
Map Location 52,579,996 - 52,739,286
singlet/doubletdoublet
Overlap geneE130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1
Upstream geneLOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13
Downstream geneSupt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046J15.T7 (MSMg01no046_j15.b1)MSMg01-046J15.TJ (MSMg01no046_j15.g1)
ACCAG276938AG276939
length666762
length of high quality
(start - end)
359 (48 - 406)304 (135 - 438)
definitionCHROMAT_FILE: MSMg01no046_j15.b1 PHD_FILE: MSMg01no046_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:48 2005CHROMAT_FILE: MSMg01no046_j15.g1 PHD_FILE: MSMg01no046_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,579,996 - 52,580,354)(52,738,983 - 52,739,286)
sequence
AACTACCATTTCAGAGAGGATCCGCGGAATTCCCACCTCGCGTGTTTGTT
CACTGTCCACCATGAGGTCCTGTTAGATCTGCTCATCTTTCTGAATTCTG
ACTAAAAAAGATGTCGCTTTTTCTCTTTCTCTCTGTCTTTCAAATGCTGG
CCAGAGTCCAGGTGTGCTTTTCCTGGTACTTTGGACTTGCTCACTCTTTC
TCTAAAGCTTCCTGTCTTAGTCACTGTTCCATTGCTGGGGAGAAACACAA
TGACTCATAAAAAGAAAACATTCAATTGGGGACTTGCTTACTGTTTCCAA
GGTTTAACCCATTATCTTCACAACAGTGAGCATCCCAGAATGAATGGCAC
TAGAACAGTAAGATGAGAACAATATCCTGTTCCACAGGAAGAGTGGTGGC
AGGGGGGGCGGCAGAGGGAGAAAGAGAGATAGAGAGAGAGAAAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGAGA
TAGAGAGAGTTTTTTTACCCTCCATCTTTTTTTCCCCACTTTTTCTTTTC
CCTTTTCTTCCTCCATACCCTTCCCTTTTTTCACTTTTTTCCTATTCCCT
TCCATCTTATTTTTTCCTCTCTCTCCCCTTCCCCCTTTCCTTCTTTACCT
TTTTATTTACCCTCTT
TCTCTTTTTTCTTTTTTTTTTTTTTTCCTTTCCCTCTTTTTATCCTTTCT
ATNNTNCCCTCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATTTGGACCCGA
CTTCCGCACACGAGAGTTGGGGGATGGGGAAGGATTTTAGGAAAGTGGAA
AGGTGAGAAAACAAAGGGTAACTGTGACTGGCGCTTCAGTCCCCTCCCCA
CCCCCGGGAGAGGGCGTGATTCCAGCTTCACTCCGCTTGGGTTTCTGCTG
TAGAGACACACCAGCTATGTGGGGCAGTCTGCGTCCCGCGTGGACTCGAG
GCTGTGCACTGCCTACCGCGGTCGAGGGACACAGGCGCTGCACATGCGCT
TTCCTCCCGGGAACTGGTGCGCGCGGGGGCGCCGAGGGGCTCGGTGACGC
TGAGACCCACGGCCGCCTGCGCCTCTCTGGCTCCTGGAGCACAGCAAGTG
TCCGTATGCCCGGTTGGGTAGTTGTGGATTGCTGCACGTTCGTCCTTCGC
CTGTAGCATAACATGTCACATGGGGCTTCCACACTCTCCTATTCATGTCT
AACGCTTGATTCCTGCTGTCTCTTCCCCATAGCTAGCCCCCAGCGCTTGT
AGTTCTTACTTTTGGCTTACTGTCTCTATCGCATTGACTTATTTTTTTCA
CAATTGCAGTCTTCATTTTTGCAAGTATTTTCTTTCATCATTAATTCACA
CAGGGCGCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_j15.b1 MSMg01no046_j15.b1 CHROMAT_FILE:
MSMg01no046_j15.b1 PHD_FILE: MSMg01no046_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:48 2005
         (359 letters)



>mm_chr14_52579796_52580554
          Length = 759

 Score =  687 bits (355), Expect = 0.0
 Identities = 358/359 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcactgtccaccatgaggtcctgttagatctgctcatctttctgaattctgactaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttcactgtccaccatgaggtcctgttagatctgctcatctttctgaattctgactaaaa 260

                                                                       
Query: 61  aagatgtcgctttttctctttctctctgtctttcaaatgctggccagagtccaggtgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatgtcgctttttctctttctctctgtctttcaaatgctggccagagtccaggtgtgc 320

                                                                       
Query: 121 ttttcctggtactttggacttgctcactctttctctaaagcttcctgtcttagtcactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttcctggtactttggacttgctcactctttctctaaagcttcctgtcttagtcactgt 380

                                                                       
Query: 181 tccattgctggggagaaacacaatgactcataaaaagaaaacattcaattggggacttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccattgctggggagaaacacaatgactcataaaaagaaaacattcaattggggacttgc 440

                                                                       
Query: 241 ttactgtttccaaggtttaacccattatcttcacaacagtgagcatcccagaatgaatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttactgtttccaaggtttaacccattatcttcacaacagtgagcatcccagaatgaatgg 500

                                                                      
Query: 301 cactagaacagtaagatgagaacaatatcctgttccacaggaagagtggtggcaggggg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 cactagaacagtaagatgagaacaatatcctgttccacaggaagagtgggggcaggggg 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no046_j15.g1 MSMg01no046_j15.g1 CHROMAT_FILE:
MSMg01no046_j15.g1 PHD_FILE: MSMg01no046_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:48 2005
         (304 letters)



>mm_chr14_52738783_52739486
          Length = 704

 Score =  588 bits (304), Expect = e-172
 Identities = 304/304 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaatttggacccgacttccgcacacgagagttgggggatggggaaggattttaggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agaaatttggacccgacttccgcacacgagagttgggggatggggaaggattttaggaaa 445

                                                                       
Query: 61  gtggaaaggtgagaaaacaaagggtaactgtgactggcgcttcagtcccctccccacccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtggaaaggtgagaaaacaaagggtaactgtgactggcgcttcagtcccctccccacccc 385

                                                                       
Query: 121 cgggagagggcgtgattccagcttcactccgcttgggtttctgctgtagagacacaccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgggagagggcgtgattccagcttcactccgcttgggtttctgctgtagagacacaccag 325

                                                                       
Query: 181 ctatgtggggcagtctgcgtcccgcgtggactcgaggctgtgcactgcctaccgcggtcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctatgtggggcagtctgcgtcccgcgtggactcgaggctgtgcactgcctaccgcggtcg 265

                                                                       
Query: 241 agggacacaggcgctgcacatgcgctttcctcccgggaactggtgcgcgcgggggcgccg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agggacacaggcgctgcacatgcgctttcctcccgggaactggtgcgcgcgggggcgccg 205

               
Query: 301 aggg 304
           ||||
Sbjct: 204 aggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)