BAC Information

Click to search

BAC

Clone NameMSMg01-046L22
Chromosome14 (Build37)
Map Location 84,324,229 - 84,324,861
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
Downstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046L22.T7 (MSMg01no046_l22.b1)MSMg01-046L22.TJ (MSMg01no046_l22.g1)
ACCAG277048AG277049
length725702
length of high quality
(start - end)
364 (41 - 404)633 (70 - 702)
definitionCHROMAT_FILE: MSMg01no046_l22.b1 PHD_FILE: MSMg01no046_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:58 2005CHROMAT_FILE: MSMg01no046_l22.g1 PHD_FILE: MSMg01no046_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTGCGGCGCTATACGACTCCTATAGTGCGAGATCCGCGGAATTC
ATTAATGATTGTCGAGTGCTCTATAGCCTCAAGATAGTGTCAGGCCTTGG
GGCCTCCCCTTGAGCTGGATCCCACTTTGGACCGGTCGCTGGGTCTCCTT
TCCCTCAGTCTCTTCTCCATTTTTGTCCTTGAAGTTCTTTTAGACAGAGA
TAGTTCTGGGTCAGAGTTTTTGACTGTGGGATGTCAGCCCCATCCCTCAC
TTGATGCCCGGTCTTTCTGCTGGAGGTGGGTTTTACAGTGCCCTCTCCCT
ACTGTAGGGCATTTCATCTAAGATTCCTCCCTTTGAGTCCTTAGAGTCTA
AAACTTCCCAGGCATGTAGTACATTCTGCAGGGTCCACCCAACCTCCTAC
CTCCAGGGGTGGCCTGTTTCCATGCTTTCTGCTGGNCCTCATGGCTTCAG
TCTTTTTCTCCCACCTATACCAGATCATTTTCCTCCCATCTGGCCCATCC
CCTTTTCCCTTCCAAATCTCTTTCCTCCCTCCCCCTCAGGTTGGGGATTA
TCCAAAAAGACCTGGGGGCATGGAATTTATTTGACTAAAAATTTCTTTTA
ACTTTCCATAGGTTATATCTCCTCAATGTGTTTAAATACTTCGGCCCTAC
ACGGAAAAATTTTTTTCTTTCTATCTTTCCTNTAAAATCTCACCCCCCTT
CCTTTCTTTTTTAAATACTTATCTT
CATGAAGTGNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATGAACCATTTTATTTCTAAAAATAAAATT
ATGTAACTTTTTGATGAAAACTGTATTTTCATGTATCTACTGGTGGATTT
GAATTTCTAGTACATTTCACCACATTTTATTCATTATGTTTCTCCATATG
CTTCTCATTTATATACCATGAATATATATTTTCTGTGTACTTTATCTGGC
AACTGTATTCCAACATCACATTAATGAAAAGATGAGGTTTTGTGATTCCA
TTTCACATAGAGACTGGGAATGTCTAGAAAAAATTTGGTCTCTCATATCA
CTAGTTTTGTTACCTGATAGACAGCAAAATGTATTTTAAAAATATTTGGG
TTTCCTTATTTATGAACAAATTGTAGACAACAATGAGATATTGCTTACAA
GGGTATGTGATAGAAGTAAGAACACTAGAATATAAAAACCACAAACAATC
TTTACAAACATGAAAAACAAATGCTCATGATGCTTGGACATCTCCTTTTT
TATGGAATAAAATGATATGGGAAGGACATAATTATCTTTACACTAATGCA
TGCTAACCCTTTCTTGTATTCATGAGTATATCTTGTTAGTTTATTTTAAT
CATTTTTATCCATGTGTATCTGTGTATTTTGTGACAGTGTGGTGCACACA
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_l22.g1 MSMg01no046_l22.g1 CHROMAT_FILE:
MSMg01no046_l22.g1 PHD_FILE: MSMg01no046_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:58 2005
         (633 letters)



>mm_chr14_84324029_84325061
          Length = 1033

 Score = 1193 bits (617), Expect = 0.0
 Identities = 629/633 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaaccattttatttctaaaaataaaattatgtaactttttgatgaaaactgtatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 catgaaccattttatttctaaaaataaaattatgtaactttttgatgaaaactgtatttt 774

                                                                       
Query: 61  catgtatctactggtggatttgaatttctagtacatttcaccacattttattcattatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 catgtatctactggtggatttgaatttctagtacatttcaccacattttattcattatgt 714

                                                                       
Query: 121 ttctccatatgcttctcatttatataccatgaatatatattttctgtgtactttatctgg 180
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 713 ttctccatatgcttctcatttatagaccatgaatatatatttgctgtgtactttatctgg 654

                                                                       
Query: 181 caactgtattccaacatcacattaatgaaaagatgaggttttgtgattccatttcacata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 caactgtattccaacatcacattaatgaaaagatgaggttttgtgattccatttcacata 594

                                                                       
Query: 241 gagactgggaatgtctagaaaaaatttggtctctcatatcactagttttgttacctgata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gagactgggaatgtctagaaaaaatttggtctctcatatcactagttttgttacctgata 534

                                                                       
Query: 301 gacagcaaaatgtattttaaaaatatttgggtttccttatttatgaacaaattgtagaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gacagcaaaatgtattttaaaaatatttgggtttccttatttatgaacaaattgtagaca 474

                                                                       
Query: 361 acaatgagatattgcttacaagggtatgtgatagaagtaagaacactagaatataaaaac 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 acaatgagatattgcctacaagggtatgtgatagaagtaagaacactagaatataaaaac 414

                                                                       
Query: 421 cacaaacaatctttacaaacatgaaaaacaaatgctcatgatgcttggacatctcctttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cacaaacaatctttacaaacatgaaaaacaaatgctcatgatgcttggacatctcctttt 354

                                                                       
Query: 481 ttatggaataaaatgatatgggaaggacataattatctttacactaatgcatgctaaccc 540
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 353 ttatggaataaaatgatatgggaaggacacaattatctttacactaatgcatgctaaccc 294

                                                                       
Query: 541 tttcttgtattcatgagtatatcttgttagtttattttaatcatttttatccatgtgtat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tttcttgtattcatgagtatatcttgttagtttattttaatcatttttatccatgtgtat 234

                                            
Query: 601 ctgtgtattttgtgacagtgtggtgcacacata 633
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ctgtgtattttgtgacagtgtggtgcacacata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)