Query= MSMg01no048_a01.b1 MSMg01no048_a01.b1 CHROMAT_FILE:
MSMg01no048_a01.b1 PHD_FILE: MSMg01no048_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:27 2005
(730 letters)
>mm_chr14_119587407_119588536
Length = 1130
Score = 1321 bits (683), Expect = 0.0
Identities = 719/731 (98%), Gaps = 2/731 (0%)
Strand = Plus / Minus
Query: 1 ggcttcaggggaagaaagcaaacaggggcatgcacgaatacccaggaagtgactacccag 60
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 878 ggctgcaggggaagaaagcaaacaggggcatgcaggaatacccaggaagtgactacccag 819
Query: 61 atggaacaattatcaaaactcctactaaatatttaagattgcacagcttattatgcatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 atggaacaattatcaaaactcctactaaatatttaagattgcacagcttattatgcatta 759
Query: 121 tttatacctcctcttgaaaccgtgggattaagaggtctctggaattctcagggcttagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tttatacctcctcttgaaaccgtgggattaagaggtctctggaattctcagggcttagtt 699
Query: 181 ctaaatgatttcaatccaaggttcatgcctttgcccgacgtgcccttcactcacctctgc 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 698 ctaaatgatttcaatccaaggttcatgcctttgcccgacgtgaccttcactcacctctgc 639
Query: 241 tcaactgatcggggtgaacgtggagaccatgaccaacgtgctctgtggcacaggaacaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tcaactgatcggggtgaacgtggagaccatgaccaacgtgctctgtggcacaggaacaag 579
Query: 301 gctggtgcttctcacgatcaaaagacatgatggggacactcagtgcagacacagttttaa 360
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 578 gctggtgcttctcactatcaaaagacgtgatggggacactcagtgcagacacagttttaa 519
Query: 361 tctattcaggtcacttgtggactttttttttttcactacaatgtccattttactatattt 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 518 tctattcaggtcacttgtggacttttttttttccactacaatgtccattttactatattt 459
Query: 421 atatatatccacacatacatc-caaaacattacattgcatgccgcccccagaaaaaaaaa 479
|||||| ||| |||||||||| ||||||||||||||||||||| ||||||| ||||||||
Sbjct: 458 atatatgtccgcacatacatctcaaaacattacattgcatgccacccccaggaaaaaaaa 399
Query: 480 aagtacacaaggaaacttactttttgaaggttcaatttaagtctgtagaaaaccgaccat 539
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 a-gtacacaaggaaacttactttttgaaggttcaatttaagtctgtagaaaaccgaccat 340
Query: 540 agggggaaatcacagtacctcccctccttctcttccccctccatgtgtctattgagccgg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agggggaaatcacagtacctcccctccttctcttccccctccatgtgtctattgagccgg 280
Query: 600 caacgtggtccactttgaagcagcaggctatgtgtttcaagttttcatatttgaattgtt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 caacgtggtccactttgaagcagcaggctatgtgtttcaagttttcatatttgaattgtt 220
Query: 660 tttctccctgagcacagtcaaagctggctccctgtaaattctacccattgagtctagttc 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tttctccctgagcacagtcaaagctggctccctgtaaattctacccattgagtctagttc 160
Query: 720 tgccccagtta 730
|||||||||||
Sbjct: 159 tgccccagtta 149
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 730
Length of database: 1130
Length adjustment: 10
Effective length of query: 720
Effective length of database: 1120
Effective search space: 806400
Effective search space used: 806400
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_a01.g1 MSMg01no048_a01.g1 CHROMAT_FILE:
MSMg01no048_a01.g1 PHD_FILE: MSMg01no048_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:27 2005
(690 letters)
>mm_chr14_119500505_119501594
Length = 1090
Score = 1295 bits (670), Expect = 0.0
Identities = 685/690 (99%)
Strand = Plus / Plus
Query: 1 gtgcagagcgggcgacattcattcagtgagtatactgatgctgtgtgagaacaactttag 60
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 201 gtgcagagcgggcgacattcattcagtgagtataatgatgctgtgtgagaataactttag 260
Query: 61 ataataagaatcttaattttctgagctgaaatgaagtcttaaagtttaagtgaagtttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataataagaatcttaattttctgagctgaaatgaagtcttaaagtttaagtgaagtttat 320
Query: 121 aacccccttttgtttttagataccctttgtcgtaaagtagaccctattgtcatgttttaa 180
|||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 321 aacctccttttgtttttagataccctttgtcgtaaaatagactctattgtcatgttttaa 380
Query: 181 ctgggacattttaaatatgcaagagcatcctgccctttagtctcattgggaagtattcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggacattttaaatatgcaagagcatcctgccctttagtctcattgggaagtattcat 440
Query: 241 aacttaaggaatttgtaacatctccttcctaggcaagattgtgtcaaaattataagcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacttaaggaatttgtaacatctccttcctaggcaagattgtgtcaaaattataagcaaa 500
Query: 301 tgaataatggttaagagtgtctaaggatcagcaaatccaattttataactttccatgttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaataatggttaagagtgtctaaggatcagcaaatccaattttataactttccatgttt 560
Query: 361 tatttaaaataagttactaatgtccaactccattctatttgtttgtttttgaagtcccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatttaaaataagttactaatgtccaactccattctatttgtttgtttttgaagtcccag 620
Query: 421 gattgaaacagagctttgggtatactaagctggcattttataactgagctacccaacctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gattgaaacagagctttgggtatactaagctggcattttataactgagctacccaacctc 680
Query: 481 taaggacatgtctcaatgcatgtgtgtatgcttgcatgtgcagttcatcatgggggcctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaggacatgtctcaatgcatgtgtgtatgcttgcatgtgcagttcatcatgggggcctt 740
Query: 541 caaacagcaggtagtgactgtgaactgtaagttttagattaattattttgacaatgtgag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaacagcaggtagtgactgtgaactgtaagttttagattaattattttgacaatgtgag 800
Query: 601 aactggaaacttgacatttaacaattatcttctatgctctcacacatagctagtgaggtc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aactggaaacttgacatttaacaattatcttctatgctctcacacatagctagtgaggtc 860
Query: 661 aaagtacttactattggtggcaaaatacat 690
||||||||||||||||||||||||||||||
Sbjct: 861 aaagtacttactattggtggcaaaatacat 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
