BAC Information

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BAC

Clone NameMSMg01-048B15
Chromosome14 (Build37)
Map Location 96,608,902 - 96,609,658
singlet/doubletsinglet
Overlap geneKlhl1
Upstream geneLOC100043784, LOC382931, 4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048B15.T7 (MSMg01no048_b15.b1)MSMg01-048B15.TJ (MSMg01no048_b15.g1)
ACCAG277953AG277954
length1,2311,228
length of high quality
(start - end)
635 (76 - 710)757 (81 - 837)
definitionCHROMAT_FILE: MSMg01no048_b15.b1 PHD_FILE: MSMg01no048_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:39 2005CHROMAT_FILE: MSMg01no048_b15.g1 PHD_FILE: MSMg01no048_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAGCATTGGGCCTATACATCCTAAGGGAGAGGATCCGCGGAATTCTG
GATTAATATTTTTGCCGTTGAAGGCTGGTCTCATCCCTCAACCAGGGGTC
ATGTCCATCCACTGGATATTGCCTTTACAAGATCGATCTCCTTTTTGTTG
GTATTTCAACTAGTGTCCTCCCTGTTGGATCCTGGGGACCTCTTGAGTCT
CTGGCATCTTGGACTTTCTAGTGGCCACTCCCAGTTTCCCTTCCCCCATT
GCTATACACCTCCTTTCGAAATCCTGACCCTTGGTACTTTTCCCCATCTC
CTCCTGTATCTGGACCAGAAACCTTTTTTTTCCCTCCTCCTCTTCTGTCC
CTCCCAAATCACTCTCTCCCTCTACTTCCCAAGATTATTTTCTTCCTTCA
TCCAAAGAGAACCTCCACACTTTGTTGTGATCTTCTTTCTTCTTGGGTTT
CATATGGTCTGTGAGTTGTATTGTGCATATATTGACCAATTATCACTGAG
TACATACTATGTTTGTTCTTTTGTGACTGGGTTACCTCACTCAGGATGAT
ATTTTCAAGTTTCTTGCTTTTGTCTGTGAATTTAATGAAGTCCCTGTTTT
TAATAGCTGAGTGGTATTCCATTGTGTAAATGTACCACATTATCTGTATC
TATTCCTCTGTTGAGGGACATCTGGGTTCTTTTAAGCTTCTGACTATTAT
AAATAGGCTGCTACAAATATAGTGTAAATGCTGGGCATGTCTGTTACACC
TCTTTAATCACAGCACTTCGGTATGTTTATGAGGTAGATTTCTGAGTTCT
GTTCTTGTCCAGTCTGGTTTATAAATTGATTTCCTGTCATTTCTAGCTAT
CCTGATTTTCCTTGTTTTCCTTTATTTCTTTTTTTATTTTTTTTTTTGAT
TTTATTTTGTGTCCTTCTTATCATTTTTTCTTTCTTTTTTTTCATTTTCT
TTAATTTTATTTTATTTCTCTTTTTTCTTTTTTTTTTTTTCTTTTCTTAA
TTTTTTTTTTTTTTTTTTTATTTTTTCTTTTTCTTATTNTTTTTTCTTTT
TTTGTTTTTTATTTTATCTTTTTTTTTTTTTCTTATTTTTTCCTTTCTTC
TTTTTATCTTTTCTTTTTTTATTTATACTCTCTCTTCTTTATTCTTTTTC
TATTTCTTTTTTTTTATTCTTCTCTTTTTCTCTTATCTACTCTTCTTTTT
TTATTTTTACTTCTCTTTTATTATTATTTTT
NNTTTTATCATGGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTCTAATTTTAAAAAAAGTAATTACAATTAT
TTATGACATCTTATAAATAAAACTTTCGTTATTTGCTGACTATTCTTCAC
AATACAATTGGTTAATCAACACTAACCTAACTTTCAAGCCCAATATAGTG
AATTTTACTTTTTCACCTTCAGTTCATTTATTTTAAATATAAGTGATTGG
AAGTATTTAAAAATTGGAAAATTTGGAAGAATAACAGAAGATACAAACAT
AATATTTGAAGGTAGAGAGGGACACTGGAGAAAGAATTCAAAATTCTTTT
GTAGGAAGCCAGGTGCCAGGCAGCATCAAAGTCATCTAATTATAAGGAGA
GATTTGTACCACCAATCTGAATGCAATGTGGATTTGGAAGGATCCTATAC
ACCATCCAAGAGGACAGTTAGGGCAAGATTTCATTCTTTATGGGGTTTAA
TAGAAAACTTAAGCCAGCCACCCCAGACTTTGAAATTGATGGAATCTGAG
ATAATATATGATTGTGATCTAAACTGCCAGGTGTGATAATAATTACACTA
GCAAAACTTTGTTACTTTTCTTTGTATTTTATGATATAGAGCACACTCTC
ATTCCAACCTTAATAGACTCTAGAAAGTACAATGGAAACATAAAATCATT
TCCCTCATGATAAAAGAAACAGTCTCTTCCCTAAAATACGAATGTTGAAA
AAAAAATGGTCAAATTGTTTCTGAAGCCCAATTCTCAGTCTCTGTAGATG
GTGTTCATTGATAAAAGCAATTGTGATGACAGCAATTAGTGCTTATGGAT
TCTGCTTTGGCCTTACACAAGGCAGGATTTGTTGCAATATGCATAATTCA
ATTATTTAGCAACCTCATTTATCTTTGAACCCGACTGCACCAAATTAAGT
GAAAAGTTTTTTGAACTGACCAAATAAATGTCAAAAAAGACCCTAAGGCT
GGCGATAAAACTTTTTTTTACTCTACTAAAAAACCCCTCAAAATTTTTAA
ACCCCCTTTTTTTCTTAGGTTTTTAATGGGGAATTTATAATACTGAGTTT
TTTCCCTTTTCAAAGGTCTTTTTAAAACCCCTTTATTATAAAAAACTGTT
GGTCCTTTTACATCTCCTTATATTATTACGTGTGTGGGAAATCTTTATCA
AAATGATTTTGTTTTCCTCTAACACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_b15.g1 MSMg01no048_b15.g1 CHROMAT_FILE:
MSMg01no048_b15.g1 PHD_FILE: MSMg01no048_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:39 2005
         (757 letters)



>mm_chr14_96608702_96609858
          Length = 1157

 Score = 1440 bits (745), Expect = 0.0
 Identities = 754/757 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaagtaattacaattatttatgacatcttataaataaaactttcgttatttgctgac 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaagtaattacaattatttatgacattttataaataaaactttcgttatttgctgac 260

                                                                       
Query: 61  tattcttcacaatacaattggttaatcaacactaacctaactttcaagcccaatatagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattcttcacaatacaattggttaatcaacactaacctaactttcaagcccaatatagtg 320

                                                                       
Query: 121 aattttactttttcaccttcagttcatttattttaaatataagtgattggaagtatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattttactttttcaccttcagttcatttattttaaatataagtgattggaagtatttaa 380

                                                                       
Query: 181 aaattggaaaatttggaagaataacagaagatacaaacataatatttgaaggtagagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaattggaaaatttggaagaataacagaagatacaaacataatatttgaaggtagagagg 440

                                                                       
Query: 241 gacactggagaaagaattcaaaattcttttgtaggaagccaggtgccaggcagcatcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacactggagaaagaattcaaaattcttttgtaggaagccaggtgccaggcagcatcaaa 500

                                                                       
Query: 301 gtcatctaattataaggagagatttgtaccaccaatctgaatgcaatgtggatttggaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcatctaattataaggagagatttgtaccaccaatctgaatgcaatgtggatttggaag 560

                                                                       
Query: 361 gatcctatacaccatccaagaggacagttagggcaagatttcattctttatggggtttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatcctatacaccatccaagaggacagttagggcaagatttcattctttatggggtttaa 620

                                                                       
Query: 421 tagaaaacttaagccagccaccccagactttgaaattgatggaatctgagataatatatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagaaaacttaagccagccaccccagactttgaaattgatggaatctgagataatatatg 680

                                                                       
Query: 481 attgtgatctaaactgccaggtgtgataataattacactagcaaaactttgttacttttc 540
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 681 attgtgatctaaactgccaggtgtgataataattagaatagcaaaactttgttacttttc 740

                                                                       
Query: 541 tttgtattttatgatatagagcacactctcattccaaccttaatagactctagaaagtac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgtattttatgatatagagcacactctcattccaaccttaatagactctagaaagtac 800

                                                                       
Query: 601 aatggaaacataaaatcatttccctcatgataaaagaaacagtctcttccctaaaatacg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aatggaaacataaaatcatttccctcatgataaaagaaacagtctcttccctaaaatacg 860

                                                                       
Query: 661 aatgttgaaaaaaaaatggtcaaattgtttctgaagcccaattctcagtctctgtagatg 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aatgttgaaaaaaaaatggtcaaattgtttctgaagcccaattctcagtctctgtagatg 920

                                                
Query: 721 gtgttcattgataaaagcaattgtgatgacagcaatt 757
           |||||||||||||||||||||||||||||||||||||
Sbjct: 921 gtgttcattgataaaagcaattgtgatgacagcaatt 957


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 757
Length of database: 1157
Length adjustment: 10
Effective length of query: 747
Effective length of database: 1147
Effective search space:   856809
Effective search space used:   856809
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)