BAC Information

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BAC

Clone NameMSMg01-048N16
Chromosome14 (Build37)
Map Location 47,219,225 - 47,249,704
singlet/doubletdoublet
Overlap genenone
Upstream geneDdhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754
Downstream geneCdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048N16.T7 (MSMg01no048_n16.b1)MSMg01-048N16.TJ (MSMg01no048_n16.g1)
ACCAG278509AG278510
length1,2291,231
length of high quality
(start - end)		700 (84 - 783)734 (90 - 823)
definitionCHROMAT_FILE: MSMg01no048_n16.b1 PHD_FILE: MSMg01no048_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:15 2005CHROMAT_FILE: MSMg01no048_n16.g1 PHD_FILE: MSMg01no048_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(47,219,225 - 47,219,924)(47,248,971 - 47,249,704)
sequence
NGGTTATTTNNNNNACAGTGGGCGCTAAGACTCCTAAGGGAGAGGATCCG
CGGAATTCATGCAATTGTGGGCTGCCTCGAGTGGGTAGAGGGAATTGACT
CCAGTCTTCGGCAAGAACAGAGCATGCTCTTAACCATTGAGCATCTCTCC
AGCCTCTAGATCTTATTTATTTATCTACTTGGCAATAAAGATTGTTTTTT
TTATTTGTGTGTATGAATGTATATTCACCATGTGATTGCATGCTCCTGTG
GAGACTAGACCTGGGTGTTAGATCCTCTGCAACTGAAGTTGCAGGCAGTT
ATGGGCTGCCAGATATGAATGTTGGGAATTGAACTAGTGTCCTAAGAACA
GAAACTGTCCTAACAAAATCACTGAATCGTCTCTACAGTCCCCCTTGGAT
TTTTGTTAAGCAACATAGAAGCTACCATCTCAATTATATTCTAACTAATA
ATCCTTACCCTTAATATTTTTATCCTCGCCATTACATGCTGTCATTTTGT
GTTCCTTTAATCTGTATATAAATGGTGTCATGCTTTGCAACTCTAATGGC
TTTCATTCAGCAATCATCATCCCTCTGAGACAGACTTGGTAGAACAATGC
ATCCTCCTGTAATAGACACTTGGAGTGTTGTACTCATTTGTATAATGCTG
AAATGAATGTTTTCTTCTTTAAAAACATGTAAGAATTTTCCTTTGATGTT
TACATCAAGCTATATGGGAATTGCCAATGTTCAATCTCAATCAAACTACA
AAATGATAAATTCATGTTATTATATACCTCAAGACGAAGATAATAGGTTT
GAGGGTATACATTTCTATAAAAAAAATTGAGAGGCTCTTTCTAAAATCCT
TTTGTATGCTAGCACCCAAGTCTTCATTGCTCGATTGACAGCCATGAAAT
GACCCAGTACTGCATAGCACAGTGAATGTATTACTTTACTATGAAAGAAA
ATATAGCAGGGAAAAAATTTCTATCGTTCCCCTGTTCTCAAGTCCCCCTA
CCAAACTTGGAAAAGATTGTTTGCTCCCTTTTTAAACCCCAATGGTTTTC
CCTGTGCCCCAAAAAAATAAACCTTTGTTTTTTATGTTAAAATATTTTTT
TTCTTTCTTAATAATATAATCCCTGGCATTTTATAACCTTTTTTAAATTT
CGTTTTCTGTGAAATTTTTTTCTCTCTTTTTATTACCTTTTTATTTATAT
AACCTTTTGTGTGTTCCTCTTTTTTCATT

NNNGGGTTTTTTNNNNNAGACGTGATGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTCTTATTCAAGCAAATGTG
TATCATCTGTGCAGCTAGAGTTCCATGGTCCTCATGTCCCTTTGTCTGTA
TTCTCTAACATAGAAAGGGTGGATTGGGAGCGATGGGGAGGAGAGATGCC
TCACAGGGACCCCGTGGCTTGGAGGATGTATCTATGGGCAAGGTCAAGTG
CAGCTAGGAGGAAGGGCAGTGCAGGAAGTCATCTCCCTAGATAAGTGGGA
TCTTGCAGTTCTGTGTGCTCTTCAAGGCCATCTACTGCAGGATGGATGTG
GCTAAACCATGGGGAGCTCTGAGAGCCCTGAATCTCCTTCTTGACTTCAC
AACTCCTGGGAGGGTGTGTGGTCACTCCATGGTATGTGAAGTGGTCACAG
GGTGGCATTATTCAAATCATCTCTCACCTTCAGATTCATTCTCCTATCAA
CAACAATCTAAAAAAAAAAGATGGAAACAAATCCTTAGGGTTTTTTTGTT
TGTTTGTTTTAATGAATGGCGGCTCTTTTCCTGTGTCACTTAGTAAAATA
AATGACCCTTTCTATAACAACAAAGCCACTAGTCTTGGGAGAAGAGTAAG
TTGGGTCATGTTGCCTGGGTGACTTGCCCAGGAAATGGGTCCGTGAACAC
AGCACTAGTGAAGAAGGGAAGCTTTTCCAGGGGACTTTTTGGGGTGCGGA
ATGGTAAATGGACAAGTTGTACCAACGGACACATGAGAAGGGACACTGAT
GATGAAAGACCCTAGGGAGACACCAAGGCCACTCCTGGGCAAGAAATCAA
GTGGAATGAATGTTACAAAGCCATACAGACAAGCGTGCTTCCTTCCCCAA
GCATTTTGGGTACAGTGATTTCTAGGGGCGAAATCCCCAGGTGTCACCTG
TACCCCGTGAAAACCTTAAGTCCCCTAATTCCCAAACAGCCCTCTGAGAC
TTTAAATTCAAAAAAGAATGCCCAATATCTGCTTTTCCTTAAATCCCCAG
GGAAACCAGGGTTTCTTTCCTAACCAGAAAACCCCCTTGATGTTTTAGAC
CCCCGGGTTTTTTTTTTTATACTAGGCCTACTTTTTTTTTTGTCCTTCTG
GCTGTTCAAAAACTTTTATATTTCCTTTCCTCCCTCTTTCAGGTGGTAAT
ATTATAATTTTTTTTTCCCCCCCTCTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_n16.b1 MSMg01no048_n16.b1 CHROMAT_FILE:
MSMg01no048_n16.b1 PHD_FILE: MSMg01no048_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:15 2005
         (700 letters)



>mm_chr14_47219025_47220124
          Length = 1100

 Score = 1353 bits (700), Expect = 0.0
 Identities = 700/700 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtagagggaattgactccagtcttcggcaagaacagagcatgctcttaaccattgagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtagagggaattgactccagtcttcggcaagaacagagcatgctcttaaccattgagca 260

                                                                       
Query: 61  tctctccagcctctagatcttatttatttatctacttggcaataaagattgtttttttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctccagcctctagatcttatttatttatctacttggcaataaagattgtttttttta 320

                                                                       
Query: 121 tttgtgtgtatgaatgtatattcaccatgtgattgcatgctcctgtggagactagacctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtgtgtatgaatgtatattcaccatgtgattgcatgctcctgtggagactagacctg 380

                                                                       
Query: 181 ggtgttagatcctctgcaactgaagttgcaggcagttatgggctgccagatatgaatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgttagatcctctgcaactgaagttgcaggcagttatgggctgccagatatgaatgtt 440

                                                                       
Query: 241 gggaattgaactagtgtcctaagaacagaaactgtcctaacaaaatcactgaatcgtctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggaattgaactagtgtcctaagaacagaaactgtcctaacaaaatcactgaatcgtctc 500

                                                                       
Query: 301 tacagtcccccttggatttttgttaagcaacatagaagctaccatctcaattatattcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacagtcccccttggatttttgttaagcaacatagaagctaccatctcaattatattcta 560

                                                                       
Query: 361 actaataatccttacccttaatatttttatcctcgccattacatgctgtcattttgtgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actaataatccttacccttaatatttttatcctcgccattacatgctgtcattttgtgtt 620

                                                                       
Query: 421 cctttaatctgtatataaatggtgtcatgctttgcaactctaatggctttcattcagcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctttaatctgtatataaatggtgtcatgctttgcaactctaatggctttcattcagcaa 680

                                                                       
Query: 481 tcatcatccctctgagacagacttggtagaacaatgcatcctcctgtaatagacacttgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcatcatccctctgagacagacttggtagaacaatgcatcctcctgtaatagacacttgg 740

                                                                       
Query: 541 agtgttgtactcatttgtataatgctgaaatgaatgttttcttctttaaaaacatgtaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtgttgtactcatttgtataatgctgaaatgaatgttttcttctttaaaaacatgtaag 800

                                                                       
Query: 601 aattttcctttgatgtttacatcaagctatatgggaattgccaatgttcaatctcaatca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aattttcctttgatgtttacatcaagctatatgggaattgccaatgttcaatctcaatca 860

                                                   
Query: 661 aactacaaaatgataaattcatgttattatatacctcaag 700
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aactacaaaatgataaattcatgttattatatacctcaag 900


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no048_n16.g1 MSMg01no048_n16.g1 CHROMAT_FILE:
MSMg01no048_n16.g1 PHD_FILE: MSMg01no048_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:15 2005
         (734 letters)



>mm_chr14_47248771_47249904
          Length = 1134

 Score = 1419 bits (734), Expect = 0.0
 Identities = 734/734 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcaaatgtgtatcatctgtgcagctagagttccatggtcctcatgtccctttgtctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 aagcaaatgtgtatcatctgtgcagctagagttccatggtcctcatgtccctttgtctgt 875

                                                                       
Query: 61  attctctaacatagaaagggtggattgggagcgatggggaggagagatgcctcacaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 attctctaacatagaaagggtggattgggagcgatggggaggagagatgcctcacaggga 815

                                                                       
Query: 121 ccccgtggcttggaggatgtatctatgggcaaggtcaagtgcagctaggaggaagggcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ccccgtggcttggaggatgtatctatgggcaaggtcaagtgcagctaggaggaagggcag 755

                                                                       
Query: 181 tgcaggaagtcatctccctagataagtgggatcttgcagttctgtgtgctcttcaaggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tgcaggaagtcatctccctagataagtgggatcttgcagttctgtgtgctcttcaaggcc 695

                                                                       
Query: 241 atctactgcaggatggatgtggctaaaccatggggagctctgagagccctgaatctcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 atctactgcaggatggatgtggctaaaccatggggagctctgagagccctgaatctcctt 635

                                                                       
Query: 301 cttgacttcacaactcctgggagggtgtgtggtcactccatggtatgtgaagtggtcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cttgacttcacaactcctgggagggtgtgtggtcactccatggtatgtgaagtggtcaca 575

                                                                       
Query: 361 gggtggcattattcaaatcatctctcaccttcagattcattctcctatcaacaacaatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gggtggcattattcaaatcatctctcaccttcagattcattctcctatcaacaacaatct 515

                                                                       
Query: 421 aaaaaaaaaagatggaaacaaatccttagggtttttttgtttgtttgttttaatgaatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaaaaaaaaagatggaaacaaatccttagggtttttttgtttgtttgttttaatgaatgg 455

                                                                       
Query: 481 cggctcttttcctgtgtcacttagtaaaataaatgaccctttctataacaacaaagccac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cggctcttttcctgtgtcacttagtaaaataaatgaccctttctataacaacaaagccac 395

                                                                       
Query: 541 tagtcttgggagaagagtaagttgggtcatgttgcctgggtgacttgcccaggaaatggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tagtcttgggagaagagtaagttgggtcatgttgcctgggtgacttgcccaggaaatggg 335

                                                                       
Query: 601 tccgtgaacacagcactagtgaagaagggaagcttttccaggggactttttggggtgcgg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tccgtgaacacagcactagtgaagaagggaagcttttccaggggactttttggggtgcgg 275

                                                                       
Query: 661 aatggtaaatggacaagttgtaccaacggacacatgagaagggacactgatgatgaaaga 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aatggtaaatggacaagttgtaccaacggacacatgagaagggacactgatgatgaaaga 215

                         
Query: 721 ccctagggagacac 734
           ||||||||||||||
Sbjct: 214 ccctagggagacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 734
Length of database: 1134
Length adjustment: 10
Effective length of query: 724
Effective length of database: 1124
Effective search space:   813776
Effective search space used:   813776
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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