BAC Information

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BAC

Clone NameMSMg01-049F12
Chromosome14 (Build37)
Map Location 11,772,920 - 11,773,570
singlet/doubletsinglet
Overlap geneFhit
Upstream genenone
Downstream geneLOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, Ptprg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049F12.T7 (MSMg01no049_f12.b1)MSMg01-049F12.TJ (MSMg01no049_f12.g1)
ACCAG278834AG278835
length1,2631,250
length of high quality
(start - end)		637 (43 - 679)717 (70 - 786)
definitionCHROMAT_FILE: MSMg01no049_f12.b1 PHD_FILE: MSMg01no049_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:15 2005CHROMAT_FILE: MSMg01no049_f12.g1 PHD_FILE: MSMg01no049_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCTCAGTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTAGCTCTGAACCTCTTTTTAATTGGGTTATTTGAATTTCTGG
AGTCCAGCTTATTGGGCTCGTTGTATATATTGGATATTAGTCCCCTATCA
GATTTAGGATTGGTAAAAATCCTTTCCCAAGCTATTGATGGACTTTTTCT
CTTATTGACAGTGTCTTTTACCTTACAGAAGCTTTGCAATTTTATGAGGT
CCCATTTGTCAATTCTTGATCTTACAGCGCAAGCCATTGCTGTTCTGTTT
AGAAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCACTACTGTCTC
CTGTATTAATTTTAGTGTCTCTGGTCTTATGTGGAGGTCTTTGACCCACT
TAGACTTGAGCTTTGTACAAAGAGATAAGAATGGATCAATTTGCATTCTT
CTACATGATAACATCCAGCTGTGCCAGCACCATTTGTTGAAAATGCTGTC
TTTTTTTTCCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGTTCTTCCAATTCTGTTCCATTGATC
TACCTGTCTGTCCCTGTACCAGTCCATGCAGCTTTCATCACAATTGCTCT
GTAGTACAGCTTAACGTCAGGAATGGTGATTCCACCAGACGTTCTTTTAT
TGTTGAGAATAGTTTTAGCTATCATAGGTTTTTTATTTTTCCAAATGACT
TTGCACATTTGCCTTTCTATCTCAGTGAAGAATTGAATAGTAATTTTGAT
GGGCATTGCATCGAATCTCCACCATTGTTTTCAACACGACTAGCCATTTT
GACTAATATAAATCCTGGCCATCTCTTGAACATGGGAAAATTTTCCCAAG
ATCTTCTTTATTCTCCCCTCTTCTAAACTTTGACAGTCTTTTTCATCCAA
TATTTTTTCCTTCCTTATATAAAGTCCTCCCAAGGGATTTTTAACCTTAT
TTGGGTACAATTGGGAAAGTTTCTTAGTTTTCCCTAAATTTCTTTTCTAT
ACTTCGTTTATCCCTCTTTGTAAAATTATCGCCACCGATTATTGTTTCAT
ATATATTCTATATTTCCAGATTCTGTCTTTTTTAATTCCTTATTACCTAA
ATTAACTATCCTACTCTACGTGAATTTAATTCTACTGCNATCTAATATCT
ATTATTACTTTCTCTCTGTTCATAACCTTTTTATCTTTAATCTTTTTTTT
TTATTTGAGGTTT

TTTNNTTTAGAAGCGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCTTTCTGTATTTTCTTTCTGTTCTATAAG
TCTGAATTCTGTTGCTGTCTTGCTCATGAGGTAGAAGGATGAGATTTTTC
CTGACCAAAGTGCTTATCATTCCCAAAGGTGACAGCAATCTAGAATTTAT
ACCTTTGTGCAGGCTACATTTTCAGACATCCAGCACCTTGGAGACCTTGC
CCGTGAAGAACAAAATCATCTGGAATGACATTTAGTCACTGACCTAAATA
AGGGCACTTCTGGGGCCCTTAATCTATTGCAGCAACAATCATATTTGACC
ACAGCCAGTAGAATGTGTCCCCCTTTACATTTAGTTATGTGACCAGTGAA
ATTATTTGAATAATTTCTGTCCTGCAGCCATAATATATAAGCCCTGGGTG
GTTGGACTAATAAATCTTTATCCTTGTCTGACATTCAAATGACTAACTGG
TTATGTACCTTTAAAAAGTAGTTCTGGCTGGAGATATGGTTCAGCAGGTA
AGAGCACCGACTGCTCTTCTGAAGGTCCTGAGTTCAAGTCCCAGCAACCA
CCTGATTCCTCTTCTGGAGTGTCTAAAGATAGCTACAGTGTATTTACATA
TAATTAATAAATAAATAAAGCTTAACAAAAAGTAGTTCTGGCTTTTGTGC
CCAAGAAGATGTTAGTCCGATCTGGGAAGACACTTCCATTCACAAAGTAC
TTACAGAGCAAGGCTGATGTCTGTTCCCCCATATGGACTGTCTAAGTGTA
TACCTGAACACACACACACACACACACACACACACACACACACACACACC
CACACACACACACCGCATACTGATCATAAAATGGCTAAGTTTCATATGAC
TGTTAAGTGGGCCAGGCCACAAAAAGTGGGCAAAAAAATTGTTGTGCCTG
ACCCAGGGTAAACCCAGACAGGGGGGCCTCTTCTACACCACCCATTTACC
CCCCTTTTTGAAAAAGGTGGTTTTTAAAAAACCTTGGGCTAATTGCAATA
AAAAAAAACACTCCTTGGACCCTTGGTTAAAATTGTCTCCGGGAGGGAAG
GCTTCTTTCAAAATTTCCGAAAATTTTTCCCCCCAAAAAAGGTTAAAAGG
TGTTTAATTTTGGAAGGGATATGCTAAAAATAACCGGGAAAATTCCCTCT
TCTCAGGAGTATTTTTAAAAACAGCATTGTTTTTTTCTATTACAGAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_f12.g1 MSMg01no049_f12.g1 CHROMAT_FILE:
MSMg01no049_f12.g1 PHD_FILE: MSMg01no049_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:16 2005
         (717 letters)



>mm_chr14_11772916_11774031
          Length = 1116

 Score = 1110 bits (574), Expect = 0.0
 Identities = 636/662 (96%), Gaps = 11/662 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   tctttctgtattttctttctgttctataagtctgaattctgttgctgtcttgctcatgag 61
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tctttctatattttctttctgttctataagtctgaattctgttgctgtcttgctcatgag 596

                                                                       
Query: 62  gtagaaggatgagatttttcctgaccaaagtgcttatcattcccaaaggtgacagcaatc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 595 gtagaaggatgagatttttcctgaccaaagtgcttatcattcccaaaggtgacagcaatt 536

                                                                       
Query: 122 tagaatttatacctttgtgcaggctacattttcagacatccagcaccttggagaccttgc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tagaatttatacctttgtgcaggctacattttcagacatccagcaccttggagaccttgc 476

                                                                       
Query: 182 ccgtgaagaacaaaatcatctggaatgacatttagtcactgacctaaataagggcacttc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ccgtgaagaacaaaatcatctggaatgacatttagtcactgacctaaataagggcacttc 416

                                                                       
Query: 242 tggggcccttaatctattgcagcaacaatcatatttgaccacagccagtagaatgtgtcc 301
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 415 tggggcccttaatctattgcagcaacaatcatatttgaccacagccagtagaatgtgt-c 357

                                                                       
Query: 302 ccctttacatttagttatgtgaccagtgaaattatttgaataatttctgtcctgcagcca 361
           ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 356 ccctttacattcagttatgtgaccagtgaaattatttgaataagttctgtcctgcagcca 297

                                                                       
Query: 362 taatatataagccctgggtggttggactaataaatctttatccttgtctgacattcaaat 421
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 296 taatatataagccctgggtggttggactaataaatccttatccttgtctgacattcaaat 237

                                                                       
Query: 422 gactaactggttatgtacctttaaaaagtagttctggctggagatatggttcagcaggta 481
           ||||||||||||||||||||| ||||||||||||||||||||||  ||| ||||||||||
Sbjct: 236 gactaactggttatgtaccttgaaaaagtagttctggctggagaggtggctcagcaggta 177

                                                                       
Query: 482 agagcaccgactgctcttctgaaggtcctgagttcaagtcccagcaaccacctgattcct 541
           ||||||| |||||||||||||||||||||||||||||||         ||||||||||||
Sbjct: 176 agagcactgactgctcttctgaaggtcctgagttcaagt---------cacctgattcct 126

                                                                       
Query: 542 cttctggagtgtctaaagatagctacagtgtatttacatataattaataaataaataaag 601
           ||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct: 125 cttctggagtgtctaaagacagctacagtgtatttatatataattaattaataaataaag 66

                                                                       
Query: 602 cttaacaaaaagtagttctggcttttgtgcccaagaagatgttagtccgatctgggaaga 661
           ||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 65  cttaagaaaaagta-ttctgggttttgtgcccaagaagatgttagtccgatctgggaaga 7

             
Query: 662 ca 663
           ||
Sbjct: 6   ca 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1116
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1106
Effective search space:   781942
Effective search space used:   781942
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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