Query= MSMg01no049_m07.b1 MSMg01no049_m07.b1 CHROMAT_FILE:
MSMg01no049_m07.b1 PHD_FILE: MSMg01no049_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:07 2005
(579 letters)
>mm_chr14_30265239_30266216
Length = 978
Score = 1050 bits (543), Expect = 0.0
Identities = 570/579 (98%), Gaps = 1/579 (0%)
Strand = Plus / Minus
Query: 1 ccagcatttgagaantaaactcttttctgtgtcctttttccatccacaactaaatacgaa 60
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 778 ccagcatttgagaa-taaactcttttctgtgttatttttccatccacaactaaatacgaa 720
Query: 61 ctccttattttacagtcccaaaagggaaaactttaggaaaaattacttgattagatcata 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 719 ctccttattttacagtcccaaaagggaaaactttaggaaaaattacgtgattagatcata 660
Query: 121 cacagatccttataaatacttttattttacaactaataattcttatgtgtaacataaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cacagatccttataaatacttttattttacaactaataattcttatgtgtaacataaaaa 600
Query: 181 catttggtgtgattttaagaactttactgtgcagctaaatggtgtgtttgactgaaccct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 599 catttggtgtgattttaagaactttactgtgcagctaaatggtgtgtttgactgaaacct 540
Query: 241 taattttctgtatggctaaagacattcaaaatcaaattaacctttgttccgacttgcttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 taattttctgtatggctaaagacattcaaaatcaaattaacctttgttccgacttgcttg 480
Query: 301 agagtgattatgtcatgaatatcaatgtgttcacaatccgtccaccctctgcagtttcag 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aaagtgattatgtcatgaatatcaatgtgttcacaatccgtccaccctctgcagtttcag 420
Query: 361 gtggctgaggacatccaatcaccgtgacatttttattttcttctattgttgtagaattta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gtggctgaggacatccaatcaccgtgacatttttattttcttctattgttgtagaattta 360
Query: 421 aagccctttgtcatctcgtcccagcagagatcagggacagttgggagggcatgacggcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aagccctttgtcatctcgtcccagcagagatcagggacagttgggagggcatgacggcct 300
Query: 481 ggcagcagtattttctaaaacagaggccaagaggaacaaggggttgagaacagcttgtta 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gggagcagtattttctaaaacagaggccaagaggaacaaggggttgagaacagcttgtta 240
Query: 541 aaatgcttcccagctatgaggaagtaaacgagggggctt 579
|||||||| ||||||||||||||||||| ||||||||||
Sbjct: 239 aaatgctttccagctatgaggaagtaaaagagggggctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 978
Length adjustment: 10
Effective length of query: 569
Effective length of database: 968
Effective search space: 550792
Effective search space used: 550792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_m07.g1 MSMg01no049_m07.g1 CHROMAT_FILE:
MSMg01no049_m07.g1 PHD_FILE: MSMg01no049_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:07 2005
(596 letters)
>mm_chr14_30146373_30147368
Length = 996
Score = 1011 bits (523), Expect = 0.0
Identities = 575/605 (95%), Gaps = 21/605 (3%)
Strand = Plus / Plus
Query: 1 tgagatgtcatcaaaaaccatcttctctctccggtgccaacagagacactgagcacccat 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tgagatgtcatcaaaaaccatcttctctctatggtgccaacagagacactgagcacccat 260
Query: 61 aatatctgctgttggcaagagggaaacaaagcaaaccaatggattcaggagaagcaggca 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 aatatctgctgttggcaagagggaaacaaagcaacccaatggattcaggagaagcaggca 320
Query: 121 gaggaataaaatgtaattattttcctgccatgatcttatatgtgcttctcagtaaacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggaataaaatgtaattattttcctgccatgatcttatatgtgcttctcagtaaacagt 380
Query: 181 ccacaacctggagtgagctccaacagccatggtgaacttgtcacatttgaagagatttta 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacaacctggagtgagcttcaacagccatggtgaacttgtcacatttgaagagatttta 440
Query: 241 aga---------gaactattatgaacaacaacaataacagagacaggggcatgtccccag 291
||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 441 agaaccgagatagaactattatgaacaacaacaataacagagacag------------ag 488
Query: 292 atctctggtgctcctgcccagaggcagcgcctacctccttgttggtcctgtcagcttgaa 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atctctggtgctcctgcccagaggcagcgcctacctccttgttggtcctgtcagcttgaa 548
Query: 352 ccagtgttccgttcagacaaggttccacatagtgaagctcttcgttatactgcaaagggg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ccagtgttccgttcagacaaggttccacatagtgaagctcttcgttatactgcaaagggg 608
Query: 412 agaaacaaccaagaggaaatatcgaatgaggaccccaaagggtactagttaacagtcaga 471
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 609 agaaacaaccaagaggaaatattgaatgaggaccccaaagggtactagttaagagtcaga 668
Query: 472 gccccatgggaagagcacagtcacaggttccattcacccagacccctgccatcaagtgct 531
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 669 gccacatgggaagagcacagtcacaggttccattcacccagacccctgcaatcaagtgct 728
Query: 532 aatgacaaacttctttgaaacaagcctacagagcccatgctgaagcacagcagagtgcat 591
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aatgacaaacttctttgaaagaagcctacagagcccatgctgaagcacagcagagtgcat 788
Query: 592 actga 596
|||||
Sbjct: 789 actga 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
