Query= MSMg01no050_g17.b1 MSMg01no050_g17.b1 CHROMAT_FILE:
MSMg01no050_g17.b1 PHD_FILE: MSMg01no050_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:42 2005
(764 letters)
>mm_chr14_93543924_93545088
Length = 1165
Score = 1410 bits (729), Expect = 0.0
Identities = 753/761 (98%), Gaps = 1/761 (0%)
Strand = Plus / Minus
Query: 5 gaattctgacagcaaaataattctcatataaggaagggaatagtctgaggatttctgtat 64
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct: 965 gaattctgacagcaaaataattctgagataaggaaggaaatagtctgaggatttctgtat 906
Query: 65 tatttcaaaaactctaactactcagtgattcctttatctaaatggtctttttcctttctt 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 tattttaaaaactctaactactcagtgattcctttatctaaatggtctttttcctttctt 846
Query: 125 cttgagttttgaaagactgattggaaattttaggcttcttctcactgtctttaataattc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 cttgagttttgaaagactgattggaaattttaggcttcttctcactgtctttaataattc 786
Query: 185 ctataaaatctga-tttttttactacatatgatgcatataatattctacaaattatcagg 243
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 785 ctataaaatctgattttttttactacatacgatgcatataatattctacaaattatcagg 726
Query: 244 ttctgtttatttattagtgctatctcaattttaagaagtgaaatcttgacacagaaacag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ttctgtttatttattagtgctatctcaattttaagaagtgaaatcttgacacagaaacag 666
Query: 304 attaaataaatgtatcaaaatgcaaaaacgccaaggtaatttaatgacactgtgacaatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 attaaataaatgtatcaaaatgcaaaaacgccaaggtaatttaatgacactgtgacaatg 606
Query: 364 attaaaataatagagttgtagccatatgtatcgtagagtagggtgagaggcattatttga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 attaaaataatagagttgtagccatatgtatcgtagagtagggtgagaggcattatttga 546
Query: 424 aagcatcacattatacttgcgacctccagcctcacagatgatgtccctgaatcctagagc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 545 aagcatcacattatacttgcgacctccagcctcacagatgatgtccctgaatcctcgagc 486
Query: 484 tggctttctgcaactggacttgaagttgaactttaagttgtcaggggcactgagaacttt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tggctttctgcaactggacttgaagttgaactttaagttgtcaggggcactgagaacttt 426
Query: 544 tggggtccaggaaaactgcataatccaggaaatccaaaggttctgtatagctaggcttca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tggggtccaggaaaactgcataatccaggaaatccaaaggttctgtatagctaggcttca 366
Query: 604 ttcaaatgggcatttttgataattactattacgtaatttaatattatcttacaacaaata 663
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 365 ttcaaatgggcatttttgataattactattacgtaatttaatattatcttagaacaaata 306
Query: 664 acccaaaatacatgttttcataaaccctcttgtgggctaatgtaaagggaatgctgagta 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 acccaaaatacatgttttcataaaccctcttgtgggctaatgtaaagggaatgctgagta 246
Query: 724 gaagacaaattcatggaagaaaaaaaatcacaaaagccaca 764
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gaagacaaattcatggaagaaaaaaaatcacaaaagccaca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 764
Length of database: 1165
Length adjustment: 10
Effective length of query: 754
Effective length of database: 1155
Effective search space: 870870
Effective search space used: 870870
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no050_g17.g1 MSMg01no050_g17.g1 CHROMAT_FILE:
MSMg01no050_g17.g1 PHD_FILE: MSMg01no050_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:42 2005
(729 letters)
>mm_chr14_93518579_93519709
Length = 1131
Score = 1326 bits (686), Expect = 0.0
Identities = 719/730 (98%), Gaps = 2/730 (0%)
Strand = Plus / Plus
Query: 2 tctttgtctatatttaaaattgcttagtacagaaaggcatctgagagaaagaaatcaatt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tctttgtctatatttaaaattgcttagtacagaaaggcatctgagagaaagaaatcaatt 261
Query: 62 attccataaatagttcttttttttt-ccatgtgaaaatttacctccctctcattattttt 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 262 attccataaatagttcttttttttttccatgtgaaaatttacctccctctcattattttt 321
Query: 121 gttagtcatgtcatattttggaccttttagacaggtagacatatacattcaaaaggtctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttagtcatgtcatattttggaccttttagacaggtagacatatacattcaaaaggtctg 381
Query: 181 gaaaatttctaacgaagtgatcattcctgattagaagtagaaatatctgaatgttctctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaaaatttctaacgaagtgatcattcctgattagaagtagaaatatctgaatgttctctc 441
Query: 241 ttttactataactaacaaaagagagttggcatggtattgctggaaacaaacaaactggtg 300
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 442 ttttactataactaacaaaagagagttggcatggtattgctagaaagaaacaaactggtg 501
Query: 301 gatgaatcctgctttttgtcttaatggcatcatgaactggcgttacactgcctgaatctg 360
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 502 gatgactcctgctttttgtcttaatggcatcatgaaatggcgttacactgcctgaatctg 561
Query: 361 aacatggccaaagttactgtaaggcaaacagcaagctgtcgttacaattcagaaacattt 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 562 aacatggccaaagttactgtaaggcaaacagcaaactgtcgttacaattcagagacattt 621
Query: 421 t-tttatatcatttgcatatgttcatttaagagaaagaccagtttgaaaatattgcacgt 479
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 622 tatttatatcatttgcatatgttcatttaagagaaagacaagtttgaaaatattgcacat 681
Query: 480 tatatctttatcaatatatttaatgatcacaattatcaacattacacataaaagtttata 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tatatctttatcaatatatttaatgatcacaattatcaacattacacataaaagtttata 741
Query: 540 taaagtaaatgtcaacataaattatattgatgatatagcccattctcataatttaatatt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 taaagtaaatgtcaacataaattatattgatgatatagcccattctcataatttaatatt 801
Query: 600 tcagaactgtaatgatcacaatctgatggttgattgacctagatctttgagttattaatc 659
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 802 tcagaactgtaatgatcacaatctgacggttgattgacctagatctttgagttattaatc 861
Query: 660 ttaatggatatagcagaaatgtcagcattaatattttcattatttcaagttcttattaat 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 ttaatggatatagcagaaatgtcagcattaatattttcattatttcaagttcttattaat 921
Query: 720 gctgacatcc 729
||||||||||
Sbjct: 922 gctgacatcc 931
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1131
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1121
Effective search space: 805999
Effective search space used: 805999
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
