BAC Information

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BAC

Clone NameMSMg01-052E03
Chromosome14 (Build37)
Map Location 32,556,887 - 32,670,498
singlet/doubletdoublet
Overlap geneAnkrd28
Upstream geneSfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd
Downstream geneGalntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052E03.T7 (MSMg01no052_e03.b1)MSMg01-052E03.TJ (MSMg01no052_e03.g1)
ACCAG280794AG280795
length710696
length of high quality
(start - end)		668 (43 - 710)624 (73 - 696)
definitionCHROMAT_FILE: MSMg01no052_e03.b1 PHD_FILE: MSMg01no052_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:49 2005CHROMAT_FILE: MSMg01no052_e03.g1 PHD_FILE: MSMg01no052_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,556,887 - 32,557,550)(32,669,934 - 32,670,498)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTATAAATGCTGATTGGAGGCAAGCATACCTCGGTCATCTATTTCAG
AGGGCCACTAAAGCCATTATGCTAATTGGTTGAAAGAGAGCTACAAGAAC
TGTTAGCAAACTGAAACTTGAAGCCATCTTGTACTTCTCGGGGTCCCATT
CAACAATATGTTTGGGTGTTTTGCAACTTCTTCTAATTCCCACATTTTCC
ATGTATTCCTTGTTTTCAGTAAAGTGTTTCTCATAGTCCTGTCATGTCTT
GTCTAACTAGAATCACAAGCTTTTTGACAGCTTTTGCAATTAAGACCTTA
TAGTCTTCCTCTCTTTGTTCTCTCCTTTCTCCTTATCTACTGCTTTGAAA
AATTGGTAAGCTTAACTCACATGTTCCTACAATAAGAGTAAATAACATTA
GAGCAGGGAGAGTGGCACACACCTATTATGCAAGCACTTGCAAATTGAGA
CAGAAGGATTCCAAATTTGAGGCCAACTTGGGCTATACAATGAGACTGTC
CCCCAAACCAAAAGAGTAAATCTATTACAAGTGGGAGTAAAGGACATGTT
TTTAAAATGATACATAAAAGCTAGATGGATTTTTATTTAGGCATCAAATA
TATACCAAGAGATTAGTATCCCTTCCTAGCCAAAAAGAATGGTAGTACTA
TACAGTGCTT

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCTCACTTCTCTGTACTTTGAACCTT
AGTGATGGCAGCCTTGGCACTGGTTTGTGCAGAAGGATTTCTTCTTGGCC
TTCCATCTGCCCCAGGCTGTTTCCATGCTCACTTAGAGTAATGGATCACA
ACCACGGCATTCCGATGCCCGGGCTTTTGCTTCTGGTTTTAACTAGTTTG
AGGCAGCAAAGCCTGAGCCTTGAGATTTTTCCACCATCCCCTTATGTGAC
TCTTTTGTGCAGCCCCAGTTGAGAAGCACTGACTTGGGGCCTCACAGGCT
AAAGTGATTTCACGTGGGGCTCTTCTAGTGGGTACTGAGGCACCACTGAT
GTAGGATAACGTTTAGGAAGGCAGGGGAAAGATGCACACACATAAAGGCC
AATTCAAGTGCTATTGTGTATTGCCAAGATCAATATTTCATTTACTCCTT
GACTCTAACATTTATTGAGGGCAGCTACTAGGATGGGCATAAACAAAAAT
GCACAATGGAAATCCTGCTTTTTGACCTAACACCCCCTAGAAGAATCCCA
CAAGCCTCACCGTAACACTTCCTCCATATCCCCAACTCCCCTTTGTGCAC
AGACAATGCTAGCCTCACTTCTCCGTTGACTGTCCCTAATTAGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_e03.b1 MSMg01no052_e03.b1 CHROMAT_FILE:
MSMg01no052_e03.b1 PHD_FILE: MSMg01no052_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:49 2005
         (668 letters)



>mm_chr14_32556683_32557750
          Length = 1068

 Score = 1276 bits (660), Expect = 0.0
 Identities = 663/664 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactataaatgctgattggaggcaagcatacctcggtcatctatttcagagggcc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactataaatggtgattggaggcaagcatacctcggtcatctatttcagagggcc 264

                                                                       
Query: 65  actaaagccattatgctaattggttgaaagagagctacaagaactgttagcaaactgaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actaaagccattatgctaattggttgaaagagagctacaagaactgttagcaaactgaaa 324

                                                                       
Query: 125 cttgaagccatcttgtacttctcggggtcccattcaacaatatgtttgggtgttttgcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttgaagccatcttgtacttctcggggtcccattcaacaatatgtttgggtgttttgcaa 384

                                                                       
Query: 185 cttcttctaattcccacattttccatgtattccttgttttcagtaaagtgtttctcatag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttcttctaattcccacattttccatgtattccttgttttcagtaaagtgtttctcatag 444

                                                                       
Query: 245 tcctgtcatgtcttgtctaactagaatcacaagctttttgacagcttttgcaattaagac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcctgtcatgtcttgtctaactagaatcacaagctttttgacagcttttgcaattaagac 504

                                                                       
Query: 305 cttatagtcttcctctctttgttctctcctttctccttatctactgctttgaaaaattgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttatagtcttcctctctttgttctctcctttctccttatctactgctttgaaaaattgg 564

                                                                       
Query: 365 taagcttaactcacatgttcctacaataagagtaaataacattagagcagggagagtggc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taagcttaactcacatgttcctacaataagagtaaataacattagagcagggagagtggc 624

                                                                       
Query: 425 acacacctattatgcaagcacttgcaaattgagacagaaggattccaaatttgaggccaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacacctattatgcaagcacttgcaaattgagacagaaggattccaaatttgaggccaa 684

                                                                       
Query: 485 cttgggctatacaatgagactgtcccccaaaccaaaagagtaaatctattacaagtggga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttgggctatacaatgagactgtcccccaaaccaaaagagtaaatctattacaagtggga 744

                                                                       
Query: 545 gtaaaggacatgtttttaaaatgatacataaaagctagatggatttttatttaggcatca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtaaaggacatgtttttaaaatgatacataaaagctagatggatttttatttaggcatca 804

                                                                       
Query: 605 aatatataccaagagattagtatcccttcctagccaaaaagaatggtagtactatacagt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aatatataccaagagattagtatcccttcctagccaaaaagaatggtagtactatacagt 864

               
Query: 665 gctt 668
           ||||
Sbjct: 865 gctt 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no052_e03.g1 MSMg01no052_e03.g1 CHROMAT_FILE:
MSMg01no052_e03.g1 PHD_FILE: MSMg01no052_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:49 2005
         (624 letters)



>mm_chr14_32669475_32670498
          Length = 1024

 Score = 1046 bits (541), Expect = 0.0
 Identities = 559/565 (98%)
 Strand = Plus / Minus

                                                                        
Query: 60   gaaggatttcttcttggccttccatctgccccaggctgtttccatgctcacttagagtaa 119
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 gaaggatttcttcttggcctcccatctgccccaggctgtttccatgctcacttagagtaa 965

                                                                        
Query: 120  tggatcacaaccacggcattccgatgcccgggcttttgcttctggttttaactagtttga 179
            |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 964  tggatcacgaccacggcattccgatgcccgggcctttgcttctggttttaactagattga 905

                                                                        
Query: 180  ggcagcaaagcctgagccttgagatttttccaccatccccttatgtgactcttttgtgca 239
            |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 904  ggcagcgaagcctgagccttgagatttttccaccatccccttaagtgactcttttgtgca 845

                                                                        
Query: 240  gccccagttgagaagcactgacttggggcctcacaggctaaagtgatttcacgtggggct 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  gccccagttgagaagcactgacttggggcctcacaggctaaagtgatttcacgtggggct 785

                                                                        
Query: 300  cttctagtgggtactgaggcaccactgatgtaggataacgtttaggaaggcaggggaaag 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  cttctagtgggtactgaggcaccactgatgtaggataacgtttaggaaggcaggggaaag 725

                                                                        
Query: 360  atgcacacacataaaggccaattcaagtgctattgtgtattgccaagatcaatatttcat 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  atgcacacacataaaggccaattcaagtgctattgtgtattgccaagatcaatatttcat 665

                                                                        
Query: 420  ttactccttgactctaacatttattgagggcagctactaggatgggcataaacaaaaatg 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664  ttactccttgactctaacatttattgagggcagctactaggatgggcataaacaaaaatg 605

                                                                        
Query: 480  cacaatggaaatcctgctttttgacctaacaccccctagaagaatcccacaagcctcacc 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604  cacaatggaaatcctgctttttgacctaacaccccctagaagaatcccacaagcctcacc 545

                                                                        
Query: 540  gtaacacttcctccatatccccaactcccctttgtgcacagacaatgctagcctcacttc 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544  gtaacacttcctccatatccccaactcccctttgtgcacagacaatgctagcctcacttc 485

                                     
Query: 600  tccgttgactgtccctaattagtgt 624
            |||||||||||||||||||||||||
Sbjct: 484  tccgttgactgtccctaattagtgt 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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