Query= MSMg01no052_h03.b1 MSMg01no052_h03.b1 CHROMAT_FILE:
MSMg01no052_h03.b1 PHD_FILE: MSMg01no052_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:04 2005
(556 letters)
>mm_chr14_28633202_28634157
Length = 956
Score = 907 bits (469), Expect = 0.0
Identities = 539/577 (93%), Gaps = 26/577 (4%)
Strand = Plus / Plus
Query: 6 gaattccatttggggcctttaataaaa-ataggaag-tttctggaatttcatttgagttc 63
||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct: 180 gaattccatttggggcctttaataaaacataggaagttttctgtaatttcatttgagttc 239
Query: 64 acacaaaagcccttgacagaggacgaacatcccacccatgttcatgtcacttcatcacat 123
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 240 acacaaaagcccttgacagaggacgaacgtcccacccacgttcatgtcacttcatcacat 299
Query: 124 tctacttttagccatttagtcagtttctctgcatcaagaaaattatctaagatgtataag 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tctacttttagctatttagtcagtttctctgcatcaagaaaattatctaagatgtataag 359
Query: 184 acatgagacagacagaaagggtgatatatat-----------------------t-tata 219
||||||||||||||||||||||||||||||| | ||||
Sbjct: 360 acatgagacagacagaaagggtgatatatatatatatatatatatatatatatatatata 419
Query: 220 tatatatttttttcttttttcttttccttgctgctactctatcttaggaatagctgagtt 279
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tatatatatatttcttttttcttttccttgctgctactctatcttaggaatagctgagtt 479
Query: 280 tgcaaagaggctttctaagagtcagaacgagcagttcctgtcctgaggttgttgttaaat 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgcaaagaggctttctaagagtcagaacgagcagttcctgtcctgaggttgttgttaaat 539
Query: 340 ccctataaggaaagagatccattcaaaagtagttgtaggcctgataatggccctcaggaa 399
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 540 ccctataaggaaagagatccattcaaaagtagtcgcaggcctgataatggccctcaggaa 599
Query: 400 tgtggacaccctaatctaaaagcctatgattatgctgcccttcttacaaaaggaccttgt 459
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tgtggacaccctaacctaaaagcctatgattatgctgcccttcttacaaaaggaccttgt 659
Query: 460 tggtgggagtgaggacctcaaggtagacaggcagattatgtcccttcctgccaggcaaac 519
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 660 tggtgggagtgaggacctcaaggtaggcaggcagattatatcccttcctgccaggcaaac 719
Query: 520 tggtcgtacggggaatataccattgctgtcatctgtg 556
||||||||||||||||| |||||||||||||||||||
Sbjct: 720 tggtcgtacggggaatacaccattgctgtcatctgtg 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_h03.g1 MSMg01no052_h03.g1 CHROMAT_FILE:
MSMg01no052_h03.g1 PHD_FILE: MSMg01no052_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:04 2005
(534 letters)
>mm_chr14_28704578_28705512
Length = 935
Score = 1004 bits (519), Expect = 0.0
Identities = 531/535 (99%), Gaps = 1/535 (0%)
Strand = Plus / Minus
Query: 1 aacttgggcctattacatatttggagaaaaaaatgtgtac-agagaaaccaaaaaattca 59
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 678 aacttgggcctattacatatttggagaaaaaaatgtgtacaagagaaaccaaaaaattca 619
Query: 60 tcgtcttggtccttatcaaactatgaacagacagtaatcaagattagaagatgacaaaga 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 618 tcgtcttggtccttatcaaactatgaacagacagtaatctagattagaagatgacaaaga 559
Query: 120 acagaccaggttgtagatgacacttgtatgtttatctgtttatataggtatctacttctt 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 558 acagaccaggttgtagatgacacttgcatgtttatctgtttatataggtatctacttctt 499
Query: 180 tgtggaaaaaaaatgtacaaacacagaatcaggttagatctgagacaatcaaaggcaaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgtggaaaaaaaatgtacaaacacagaatcaggttagatctgagacaatcaaaggcaaat 439
Query: 240 tggctgcatgtcacagtgtcatttgtctacagtgactcatcctagaaacctgtgctctgg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tggctgcatgtcacagtgtcatttgtctacagtgactcatcctagaaacctgtgctctgg 379
Query: 300 acggaggtcttcatgctaccctggccctgatgtacacagtcctgatatcagatcatgagg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 acggaggtcttcatgctaccctggccctgatgtacacagtcctgatatcagatcatgagg 319
Query: 360 acattgtgcatctcttgtgttagtaactagatagcatgtggcttttgaaaggatagcctc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acattgtgcatctcttgtgttagtaactagatagcatgtggcttttgaaaggatagcctc 259
Query: 420 tgtatatgcatttgttattgttcttaactgacttaagtgtaacagaacaagctaatgagg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgtatatgcatttgttattgttcttaactgacttaagtgtaacagaacaagctaatgagg 199
Query: 480 tttgaggagacggctcatctattaagcctatttgttgctcttgcagagtacctgg 534
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 198 tttgaggagacggctcatctattaagcctatttgttgttcttgcagagtacctgg 144
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 935
Length adjustment: 10
Effective length of query: 524
Effective length of database: 925
Effective search space: 484700
Effective search space used: 484700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
