BAC Information

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BAC

Clone NameMSMg01-052J15
Chromosome14 (Build37)
Map Location 47,230,115 - 47,339,463
singlet/doubletdoublet
Overlap genenone
Upstream geneDdhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754
Downstream geneCdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052J15.T7 (MSMg01no052_j15.b1)MSMg01-052J15.TJ (MSMg01no052_j15.g1)
ACCAG281047AG281048
length703703
length of high quality
(start - end)
359 (62 - 420)484 (68 - 551)
definitionCHROMAT_FILE: MSMg01no052_j15.b1 PHD_FILE: MSMg01no052_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:16 2005CHROMAT_FILE: MSMg01no052_j15.g1 PHD_FILE: MSMg01no052_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,339,106 - 47,339,463)(47,230,115 - 47,230,598)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCCA
GGCATATCCACAGGAACTGCCAGCCCCAGTCGGGGCACCTGAAACGTAGA
GGAAGAGGCCTGTGGGAGGTGCAATGAGAGAAACCCCAGGACAAGAGGGA
GGAGAGGGATGGGGCCTCCAAATGCACGGTGAGGGCCCAGGCAGCTATTG
TGAGAGGCTTGGAGTCCCGCCACCGGAGGGTTTGTGAAGAGCAGTAATGA
AGTCTGGCCACTGTGCCGGGAACAGGTTGTGTGGCAGAGGAGGAGGAGGC
AGAAGCAGACACACTATCACCCCAGCACGGGAGAGAACAGTGAGGGCGAA
TGGGCCCAGCACAGTGGTAGGGACTGGCCAGGATCCCAGCATCTGCTCCA
GGGTCTGCTCTGAAGCTGACAGACAAGGTTTGCTGCATGCAGGGTGGACT
TTATGAAGTTCATGTGTGTGCATGTGTGTGCTGGTCACAGGAGTGGTGCG
CGTGTGTGTGTGTTGGGCGTAACATTCCCATGCCAGTCTAGTCCCCTCCT
GTTCCCTCCTGCGTGAAGTTCTTGAATGGTTTTGGACTGCTGCCCTCAGT
GAGGTTGCCCTGACGATTGGACATTCCTGGCGCTGCTTTTTACGTGTCTC
TTGTTACCCCCCTTCTCTTTGATTCTTTTCTTAATTTGGCCCTTCGTATA
TCC
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACTATGCACAGCTTTTCTAGACTTACATACC
CATCATTAACTCAGCCTATTCCAGGCCCAGATGAGGAATGTGGTGACATT
CCAGGCAGTAGGACCACCGAGAAGCCCCTCTCCCACAGAATCAACCCTGG
ACAGTGCCCCGCTGCACCCCCAGTTAGGAGTGGGAATGTCCGTCTCAGAG
ACCTACCACACCATGCTTCCTTGTCAAACGGCTGCAAGTCCACCATCCTA
AGTACATGATCCAAAGGCACTGGATGCATTCTGCAGCGCATGAAGAGTTG
GATTGTATTCATTTCTTCCTCATACCAACTTTTCACAAATATATTACTGG
TCTTGTAGCTCCAAGTGAGGGACCAATGACTTCAAGAGTCATTATTGAAG
CTTGGAGTATCCGCAAACTGTGAATTTTATTTTAAAATTGGCTGTCTAAG
GTTATTTTTCCCCTCTAAAATGCTACTGTCAAATGAGCATTTAAAAACAT
TTATCATAAACCAAGGGCTCCAAACTTTAATCTGTACATTCCACACAGAG
GAAAGCCTGGCCTAGCGCTGATGCGTAAATGATGTGTTGGTCTAATCTAT
TTTTTCACAGGAGGTGTCTGAGAGGAGGGAAATTAAAAAACATGTCAAAC
GGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_j15.b1 MSMg01no052_j15.b1 CHROMAT_FILE:
MSMg01no052_j15.b1 PHD_FILE: MSMg01no052_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:16 2005
         (359 letters)



>mm_chr14_47338906_47339664
          Length = 759

 Score =  677 bits (350), Expect = 0.0
 Identities = 356/358 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaactgccagccccagtcggggcacctgaaacgtagaggaagaggcctgtgggaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aggaactgccagccccagtcggggcacctgaaacgtagaggaagaggcctgtgggaggtg 499

                                                                       
Query: 61  caatgagagaaaccccaggacaagagggaggagagggatggggcctccaaatgcacggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 caatgagagaaaccccaggacaagagggaggagagggatggggcctccaaatgcacggtg 439

                                                                       
Query: 121 agggcccaggcagctattgtgagaggcttggagtcccgccaccggagggtttgtgaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agggcccaggcagctattgtgagaggcttggagtcccgccaccggagggtttgtgaagag 379

                                                                       
Query: 181 cagtaatgaagtctggccactgtgccgggaacaggttgtgtggcagaggaggaggaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cagtaatgaagtctggccactgtgccgggaacaggttgtgtggcagaggaggaggaggca 319

                                                                       
Query: 241 gaagcagacacactatcaccccagcacgggagagaacagtgagggcgaatgggcccagca 300
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaagcagacacacaaacaccccagcacgggagagaacagtgagggcgaatgggcccagca 259

                                                                     
Query: 301 cagtggtagggactggccaggatcccagcatctgctccagggtctgctctgaagctga 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cagtggtagggactggccaggatcccagcatctgctccagggtctgctctgaagctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no052_j15.g1 MSMg01no052_j15.g1 CHROMAT_FILE:
MSMg01no052_j15.g1 PHD_FILE: MSMg01no052_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:16 2005
         (484 letters)



>mm_chr14_47229915_47230798
          Length = 884

 Score =  920 bits (476), Expect = 0.0
 Identities = 482/484 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactatgcacagcttttctagacttacatacccatcattaactcagcctattccaggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactatgcacagcttttctagacttacatacccatcattaactcagcctattccaggcc 260

                                                                       
Query: 61  cagatgaggaatgtggtgacattccaggcagtaggaccaccgagaagcccctctcccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagatgaggaatgtggtgacattccaggcagtaggaccaccgagaagcccctctcccaca 320

                                                                       
Query: 121 gaatcaaccctggacagtgccccgctgcacccccagttaggagtgggaatgtccgtctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatcaaccctggacagtgccccgctgcacccccagttaggagtgggaatgtccgtctca 380

                                                                       
Query: 181 gagacctaccacaccatgcttccttgtcaaacggctgcaagtccaccatcctaagtacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagacctaccacaccatgcttccttgtcaaacggctgcaagtccaccatcctaagtacat 440

                                                                       
Query: 241 gatccaaaggcactggatgcattctgcagcgcatgaagagttggattgtattcatttctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatccaaaggcactggatgcattctgcagcgcatgaagagttggattgtattcatttctt 500

                                                                       
Query: 301 cctcataccaacttttcacaaatatattactggtcttgtagctccaagtgagggaccaat 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 501 cctcataccaacttttcacaaatatattactggtcttgtagctccaagtgagggagtaat 560

                                                                       
Query: 361 gacttcaagagtcattattgaagcttggagtatccgcaaactgtgaattttattttaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacttcaagagtcattattgaagcttggagtatccgcaaactgtgaattttattttaaaa 620

                                                                       
Query: 421 ttggctgtctaaggttatttttcccctctaaaatgctactgtcaaatgagcatttaaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttggctgtctaaggttatttttcccctctaaaatgctactgtcaaatgagcatttaaaaa 680

               
Query: 481 catt 484
           ||||
Sbjct: 681 catt 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)