BAC Information

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BAC

Clone NameMSMg01-053C04
Chromosome14 (Build37)
Map Location 39,733,997 - 39,734,396
singlet/doubletsinglet
Overlap geneNrg3
Upstream geneLOC100041521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053C04.T7 (MSMg01no053_c04.b1)MSMg01-053C04.TJ (MSMg01no053_c04.g1)
ACCAG281439AG281440
length692728
length of high quality
(start - end)
400 (64 - 463)104 (70 - 173)
definitionCHROMAT_FILE: MSMg01no053_c04.b1 PHD_FILE: MSMg01no053_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:57 2005CHROMAT_FILE: MSMg01no053_c04.g1 PHD_FILE: MSMg01no053_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGATTC
TCAGATTATCCCAAATAGCATGACTCCAGCTTGGGAAATATTCTACTCTG
AGAGTGATATGCACCTCCAAGTCATGTGGTTCAGGTTTTCTTTCTTCCAC
TTTGCAATTTTTGACACTAAGTGATAATTATAGAGCTGAGAGGCACCCAG
CACATTTGCAGGAACTAATTGAGTCAGTGTAGAAAAGGCTGATTGTGCAG
TAGACTATAAACTACCAATTAAAAGAGAAGGAAATCACATGCACGGGGTG
TCTTAGGTATTTATATCATAGTGGCAACATTCCCTGTCTCTATTGAAATC
ATCAGCATGTCAACAGGCCTGGCCACTTGATTCTCAGTTCCAAGTCTAGG
TCTAGCCAAGACAACTGCAAGTACCAGAAAGTTCACTGTCTTTGTCCCAC
CTGACTGGATATGGGGAGGATAAGACACATAAATTCAATGCATAATGAGA
GAAATCAGGAGCAGATCCATGTATCACTTAACTGCCCTTGCCCACAGAAT
CTCCCCAGACATCTACAAAAACTAGCTTTTGCATTGTGCACGTTGTTAAC
AGACAATGGACCATTTGAAAGCCAGACTATTACTACCAGCTTTCCAGAGA
GTTCGGGTGCCCCGCCTAAACATTCCTACATTTTCTGGTATA
CCATGCAGTGCGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAGCCATTAAGACCACACAGTGCTTAGGAG
CTGGGGATTGGGGAAGGAGGGAGACAGAGACCGAGGCGGGAGGCAGGGAG
GAACTGGAGGAGAGAGAGAGGACTGCTCCTAACTATGGCGGAGAAGGCTT
ATTATACATATGTTGTACAGCATAGCCTAAGGTAGGCCCATCTGGTAGAG
TCTCGTATGTACTTGACCCTGATCACTGGGTAATATAGATAGAGTATCAG
TTCTTCTCTCCTTGTATTTCTCTTTCGCGCCGATTTTCCTATTATACTAT
TCCTTTCCGTATTCCGATCCCTCTTTCATGACTATTTTTTCCTATTCCTC
TCTTTCTCCTCCCCGTCTTCTCCTCCTTTCCTTTTCCGCCTCCCTTCCGT
GCTTTTCTCCTCCTCTGTTCTTTCCCCTCTCATCTTTCCCCTTTTCTCTC
CTGCCCGTTTCTCTCTTCTCCACCTTTCTCCCTCTTCCTCCCTTTTTCCC
CATCCCTCCTTATTCCCCCCTTTCCCCTCTTCATCTCCTCTCCCCCGCTT
CTCTCTCCCTCTCCCTCCTCCTTCTTCCCTTTCTCCTCCCCCCTCTCTCC
CCTTGCCCCCGTCCTTTTCCCTTTTCTCTTCCTCTTCTTCCATTTCTCCT
TCCTTTCTTCGCCGTTCTCTTCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_c04.b1 MSMg01no053_c04.b1 CHROMAT_FILE:
MSMg01no053_c04.b1 PHD_FILE: MSMg01no053_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:57 2005
         (400 letters)



>mm_chr14_39733797_39734596
          Length = 800

 Score =  758 bits (392), Expect = 0.0
 Identities = 398/400 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagcatgactccagcttgggaaatattctactctgagagtgatatgcacctccaagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aatagcatgactccagcttgggaaatattctactctgagagtgatatgcacctccaagtc 541

                                                                       
Query: 61  atgtggttcaggttttctttcttccactttgcaatttttgacactaagtgataattatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 atgtggttcaggttttctttcttccactttgcaatttttgacactaagtgataattatag 481

                                                                       
Query: 121 agctgagaggcacccagcacatttgcaggaactaattgagtcagtgtagaaaaggctgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agctgagaggcacccagcacatttgcaggaactaattgagtcagtgtagaaaaggctgat 421

                                                                       
Query: 181 tgtgcagtagactataaactaccaattaaaagagaaggaaatcacatgcacggggtgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgtgcagtagactataaactaccaattaaaagagaaggaaatcacatgcacggggtgtct 361

                                                                       
Query: 241 taggtatttatatcatagtggcaacattccctgtctctattgaaatcatcagcatgtcaa 300
           ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 360 taggtatttatatcacagtggcaacattccctatctctattgaaatcatcagcatgtcaa 301

                                                                       
Query: 301 caggcctggccacttgattctcagttccaagtctaggtctagccaagacaactgcaagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 caggcctggccacttgattctcagttccaagtctaggtctagccaagacaactgcaagta 241

                                                   
Query: 361 ccagaaagttcactgtctttgtcccacctgactggatatg 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ccagaaagttcactgtctttgtcccacctgactggatatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)