BAC Information

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BAC

Clone NameMSMg01-053D17
Chromosome14 (Build37)8 (Build37)
Map Location 61,919,150 - 61,919,31969,310,452 - 69,310,617
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMtmr6, 2600011E07Rik, Ppia-ps14_696.1, EG628836, Spata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19, Sacs, Sgcg
Downstream geneArl11, EG432864, Ebpl, Kpna3, LOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253, Dleu7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053D17.T7 (MSMg01no053_d17.b1)MSMg01-053D17.TJ (MSMg01no053_d17.g1)
ACCAG281503AG281504
length731732
length of high quality
(start - end)
170 (61 - 230)167 (69 - 235)
definitionCHROMAT_FILE: MSMg01no053_d17.b1 PHD_FILE: MSMg01no053_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:05 2005CHROMAT_FILE: MSMg01no053_d17.g1 PHD_FILE: MSMg01no053_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:05 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,919,150 - 61,919,319)(69,310,452 - 69,310,617)
sequence
XXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATCCGCGTCATTCTC
AGATTACCATCGGCTGGGGCATGATTTCAGCCCAGGTCCAAATTATTCAG
CACAGATCTTGCTTCCTTCCTACAGACTTCCTTCTCACCCTGCATTTTTG
TCTCATTTCTCAGTGAGCCCACATGACCATGATACCATGGTCTATGAAGC
AGGCCTATGGGTGGGGAGTTATCCTCACAAGCAGTATGTAGAAGACCTTC
ATCACCAGCATGTGGTATAGAAGGCCATCTCTGCTCTAAACACACAAAGC
ATAGACTCTGTTATGACATAATTATTTCATTTGTAATAATCTATGGGAGC
AAGTTGATTACCTTTCAAAGCTTGGAAATGTGTCACACTTATTATTACCA
ACCTAGGTACTGTATATTTCAAAATGTCACTATTTATAGAGGAAACTGAC
ATTTGTTTTTGTTCATCCATCATAAATTATTTTCACTTTTAAAATCTATT
GCTCTTTTTACTACATCTGTTTATCTTTTCACTTAGCGCCTCGCCTTTTT
TTTCACTTTTCCCCGCACTATGACCGCTTATATTCTTGTACTGTTGTTTC
CTGACCTCAGGCGTTCTACTCCTGACGAAGTGCTTCCAGCTAATTACCTA
TTCCTGACCCCTATTACCTTCTTTCTCTTTTTCCCCATTGGACTCCTCAC
TTTTAGCTTACTAATTACCCTACTTAACCTG
GATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCAACAAAATTCAACTTTCTCGTCTTTATTGTTTTGTAACTGAA
CTGCATTAGGAGTGACTCATCCAAGGATCTAAAACAATTTTTACATTTAT
TTATATATTTACTCTTTATTATGTGGGAGGATGTGTAGATGCCATTGTTA
TATATGTGTTGGGGAGGGATCAGAAGATAACTTTCGGGACTCATTTCTTT
CATCATGCTGAGTCTAGGTATCCCTTCACATTGTCATATCCGATGGCAGG
CACCTTTAATTTTTTTTTTATCTTGCACGACCAACGTCAGGTAATATTTA
TTTGTATTCTTAGCCCATCAGTAATATCTTATCACTATAATTTGATTATA
GAGATATAACTGTCCAGTATAATAGAGAATCGCCGATTTTTTCCCGTTTT
CTGTCATCTGACTCATACTTCTATTGTACTAGCCACGTGTTGTAATCCTT
TTGCCATCCGTCATGCCCCTTCCCTAATCGCCAGCGTATTGTAATTTATC
TTTGCCGTACTTATCACTATTTCAGCGCTATCCCGCGTTTTGCTTGTGTT
TGTTTATTACCTTCTATTACCTTTGGCCCTTTTCCCCTATTACCCCCGCT
ATTTCTTGTTTCCCCCTTTCTCCCCCTATTCTTCCCTTTCTTCATACGCG
TCTTTAAATACCTTGTTTATTTTCCTTGCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_d17.b1 MSMg01no053_d17.b1 CHROMAT_FILE:
MSMg01no053_d17.b1 PHD_FILE: MSMg01no053_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:05 2005
         (170 letters)



>mm_chr14_61918950_61919519
          Length = 570

 Score =  321 bits (166), Expect = 1e-92
 Identities = 169/170 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggctggggcatgatttcagcccaggtccaaattattcagcacagatcttgcttccttcc 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cggctgaggcatgatttcagcccaggtccaaattattcagcacagatcttgcttccttcc 260

                                                                       
Query: 61  tacagacttccttctcaccctgcatttttgtctcatttctcagtgagcccacatgaccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagacttccttctcaccctgcatttttgtctcatttctcagtgagcccacatgaccat 320

                                                             
Query: 121 gataccatggtctatgaagcaggcctatgggtggggagttatcctcacaa 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataccatggtctatgaagcaggcctatgggtggggagttatcctcacaa 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no053_d17.g1 MSMg01no053_d17.g1 CHROMAT_FILE:
MSMg01no053_d17.g1 PHD_FILE: MSMg01no053_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:05 2005
         (167 letters)



>mm_chr8_69310252_69310818
          Length = 567

 Score =  298 bits (154), Expect = 1e-85
 Identities = 163/166 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactttctcgtctttattgttttgtaactgaactgcattaggagtgactcatccaaggat 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 366 aactttctcgtctttattgttttgtaactgagctgcattaggagtgactcatccaaggat 307

                                                                       
Query: 61  ctaaaacaatttttacatttatttatatatttactctttattatgtgggaggatgtgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctaaaacaatttttacatttatttatatatttactctttattatgtgggaggatgtgtag 247

                                                         
Query: 121 atgccattgttatatatgtgttggggagggatcagaagataacttt 166
            |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 246 gtgccattgttatatatgtgttggggagggaccagaagataacttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)