BAC Information

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BAC

Clone NameMSMg01-053E09
Chromosome14 (Build37)
Map Location 120,906,478 - 120,906,715
singlet/doubletsinglet
Overlap genenone
Upstream geneHs6st3, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a
Downstream geneLOC668835, LOC668837, Ranbp5, Farp1, LOC100043837, Stk24, Slc15a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053E09.T7 (MSMg01no053_e09.b1)MSMg01-053E09.TJ (MSMg01no053_e09.g1)
ACCAG281532AG281533
length7021,337
length of high quality
(start - end)
238 (77 - 314)---
definitionCHROMAT_FILE: MSMg01no053_e09.b1 PHD_FILE: MSMg01no053_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:08 2005CHROMAT_FILE: MSMg01no053_e09.g1 PHD_FILE: MSMg01no053_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGTAGCGCGGA
ATTCCAGGAGTGTTCCCAGACCATAAGGCCAATGCTAATTAATGGGAATT
ACCTAGAACCCCCAAATTAACCCCCTATGATTGAGATAAGGAAAAGAAAA
TATTACCAGGATGGGTATTTATGCTGATTTCAAACCTTCTTCATGCTATT
TCAAAGGTCAGGGAAAATGATCAATCACCCTCCCTTCCTACGGAACGAGC
CAGTCTGTGGTGAGCTTGGTTTCAGGGGATCTTTATGAAGGGTGTCTGGT
GCATCATGTGGCAATGCCTTGCTTCTTCATACCGAGAATACACTGCACAA
GTTTAAGCTTTTTTCTCCCCCCCCACTTTCATTAAATAAATTTATTTGTT
AAAATAATTTAACTCCAAATACAACTGTTGAATTTGCACTGAGTTCTAAT
GACAATTCATGCTTCAATTGAAATGTCTGGTTTCTCTCGACTCTGTTACT
ATACATATTGCCGTTGCTCACTTTTCTATGCTCCGCTGCACTAAAGTCCC
AAATTTTACTGTGAACTGGATTTCTTGGGCAACCTCTTACTCAACTTCTT
TTCCGGCTTTAAACTCCTATGAAACTCATCCTATAACCTTTGATCCCCTC
TTAATAACTTTTTTTTTTTTTTTTTTTCATTATACCCCCCTTGTCCTCAT
AG
NCCCCTCTCTTTTNNNNNNTTCTCTCTCTCTTCTTTNNNNCNCNCCACTT
TNNCCNCCTCCATACANNNAAGGNGAAAGANNGNGNNNNNNNNNNNNTTN
TANATNNTNNTTTTTACAGNANATAAAGAGNAGGTGTGTAAGTCAACTAC
AATACGAAATATTNNTNATTCTTTTATCTTCTTCNCATATATCTCTCTAT
CATCTCCTTTCTCTTCCTTTTACTGTCTTCTATCTTATATACCATTATCT
AGACACGAACTATACTTCCCCCTATTACCTTATATACACTCTCTATCTCC
CTTTTTTTNTTCTTTATCTTNCTTATCTCATCTGTCTCTCGCCGCACTCC
CNACTCCTCNCCTCCACATCATCTCCTCCTTTCTTACCTACAATCGNCTC
ATACCTACCTNNNCCTTCCCATCTCTCTCAACCTCCNTATTTNCNTTCNT
CTNACTCTTTCACATCGCTCTCTTCTACTATATATTACCACGCATGATCA
GCGGATCGACTATTCGCGCGTATTTTGCGCTGCTGTATATTGTACTGTAC
TTTCACTGAGAGTAACGTAGTACNGGCGATAATAGCAACGCGGTGTTCGT
TCGTATATTATGCTTGCGCTATCGGCACACTAACGCAGTCTCGTAACCGT
AGATTAGCGTAGTCTACGTAGCTTCTATGATTCGCCGCTACTGTCGCCTC
TCTCTACTCATATCCGCTGTATTCGCTTCATTCCTGCTTATTAAACTCCG
GCCTTTCCGANGCCTATCGNCTATTCTTCCCATCTTTTATTTATCATTAT
CAATTGATGATCATACATGCTTTATATAATAATACTCGCCCGACAATCTA
TACTACCGATCCCTCGACCAATACACACACACAGCACAATACATAAACAA
CACGTATGCAAACCATGAAGAAAGAATGACGTGTGGATAGACAATATTGC
GGCTATAGTAGATACCGCAGAGTTACGGTATATCTCGATACACGTAGCTT
GTCATCATGTGGAGAGCGACAATTAGGACGGAGCAGAGGATGCACNACCG
GTGTCGTAGATATGCTGTATACGCGCGACGCACGCGATGTGTCTGTAGTG
TGGTAGCACGACGCGCGATGTACATCCGCACGACCGGTTATCTGANTGAC
NTATGAGTGACCGTCACATACATAGCATGTGAGTTGATTGCGTGCCCGAT
AGTGAAACGCGCAGCAGATATATGATATTGTGATATGGATATCATTACGC
GATCACCCGCTGCCGACACCGCGACATATATATCGACCGATTACGNGGCG
ATTGTCTCAGGANGATAGTAGTTCGGCGCGCGCCGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_e09.b1 MSMg01no053_e09.b1 CHROMAT_FILE:
MSMg01no053_e09.b1 PHD_FILE: MSMg01no053_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:08 2005
         (238 letters)



>mm_chr14_120906278_120906915
          Length = 638

 Score =  422 bits (218), Expect = e-122
 Identities = 233/238 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggccaatgctaattaatgggaattacctagaacccccaaattaaccccctatgattgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 438 ggccaatgctaattaatgggaattacctagaacccccaaattaaccaactatgattgaga 379

                                                                       
Query: 61  taaggaaaagaaaatattaccaggatgggtatttatgctgatttcaaaccttcttcatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taaggaaaagaaaatattaccaggatgggtatttatgctgatttcaaaccttcttcatgc 319

                                                                       
Query: 121 tatttcaaaggtcagggaaaatgatcaatcaccctcccttcctacggaacgagccagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 318 tatttcaaaggtcagggaaaatgatcaatcaccctcccttcctacggaacgagccagcct 259

                                                                     
Query: 181 gtggtgagcttggtttcaggggatctttatgaagggtgtctggtgcatcatgtggcaa 238
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 258 gtggtgagcttggtttcaggggatctttatgaagggtgtctggtgcgttatgtggcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)