BAC Information

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BAC

Clone NameMSMg01-053F19
Chromosome14 (Build37)
Map Location 12,875,918 - 12,876,027
singlet/doubletsinglet
Overlap genePtprg
Upstream geneFhit, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, LOC100042441
Downstream gene3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053F19.T7 (MSMg01no053_f19.b1)MSMg01-053F19.TJ (MSMg01no053_f19.g1)
ACCAG281597AG281598
length735727
length of high quality
(start - end)
279 (61 - 339)110 (69 - 178)
definitionCHROMAT_FILE: MSMg01no053_f19.b1 PHD_FILE: MSMg01no053_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:15 2005CHROMAT_FILE: MSMg01no053_f19.g1 PHD_FILE: MSMg01no053_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGGCCCATCCCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCC
AATATCAAAGCAAATGGCGAGAAGCTGGAAGCAATCCCACTAAAATTAGG
GACTAGACAAGGCTGTCCACTCTCTCCCTACCTATTCAACATTGTACTTG
AAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGGGGATACAA
ATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCGGATGATATGATAGT
ATATATGTGACCCTTATAATTCCACCAGAGAATTCCTAAACCTGATTAAC
AGCTTCAATGAAGTACCCGGATATAAAATTAACTCAAACAAGTCCAAGTC
TTTTTAGTACACTTCGGATTTATTGGTTTACAAAGATATTATTGGAAACC
GCACCTTTTCTCTTTATTCTCACACATACATCCATACTTCGGTGTGACTC
CAATGAAGTGAAAGACCTTGACCATAACCTCTAACCTTCGACCACCAATT
ATTGTACATCTCCTAACACGGATAGATCCCTATGTTCTTGCATTGTTATG
CCCCTCTAAGTAACATATGCTATCTTTGCCAAAGCCAACTACAGACTTAA
CGCTATTCCCCATCAAAATTCATACTCACATCCTCCAAGATTTCAAGCGG
GATAATCTTGCCCGATTCATCTCGACTTTACCCCC
TAATGTGGGAGGCCTGGCGGCCGCCTGTTTCACAAATTGAGGTGAACTAT
AGAATTTTCGCGAAATTCAGAATCCTAAAGGAATATTTATTACCAAGGCT
GAATGAGATCTATGTATCTGTGCCTGAGAATTGTTTTGCAATGCTTCCTA
CCAAAGTGCTTTTATGTTTGTCAACAATAGATGAAGAATATGTGAGTCCC
GTTGCTGATGTTCGATCTCTTGGGCTTGTCTTGCTGTCTCTTCATTATCT
GCTCCTGAAGGACTTGCTGTGATCCTTGATGGCTGGTTTCTGTTTCCGAG
CATCTGGAATTTCCTTGTTTTTCCCTGCAGTTATTTGCGACTGTTTTTCT
CCTTCAGATTCGCTTCAGGTTTTTTCTCCCTTTCTCATTCTTTCACTTGA
TGTCTTGTTCACTCCACAGTGTTTATCAGACCATTTCTCTGTGCCTGTTT
CCTTGAAAATGTCCAAGGTAACTTACCACCGCGTCCTCCTCTCATTGGAA
TACCTAGCATTTTTATCTCATGTGATCATATGCTATTCCTGTTTTTATAA
TGACTGACCGATACTTTATGTCACCCTTTCTACATCATCCATGAGATATA
TAATTTACCTTTGCGTACTCTTCCCCCCTTTCCACCACTTCCTTCCCCAA
TTACTGTTTCCCCCATTTGTGGACTTTGTGCACTGTCACTCCCTGATATT
CTTCTGGTATAAACTTCCCTCACCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_f19.g1 MSMg01no053_f19.g1 CHROMAT_FILE:
MSMg01no053_f19.g1 PHD_FILE: MSMg01no053_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:15 2005
         (110 letters)



>mm_chr14_12875718_12876227
          Length = 510

 Score =  213 bits (110), Expect = 3e-60
 Identities = 110/110 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatcctaaaggaatatttattaccaaggctgaatgagatctatgtatctgtgcctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatcctaaaggaatatttattaccaaggctgaatgagatctatgtatctgtgcctgag 260

                                                             
Query: 61  aattgttttgcaatgcttcctaccaaagtgcttttatgtttgtcaacaat 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattgttttgcaatgcttcctaccaaagtgcttttatgtttgtcaacaat 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 510
Length adjustment: 8
Effective length of query: 102
Effective length of database: 502
Effective search space:    51204
Effective search space used:    51204
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)