BAC Information

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BAC

Clone NameMSMg01-054J21
Chromosome14 (Build37)
Map Location 107,619,377 - 107,619,998
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
Downstream geneLOC668752, EG668754, LOC668757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054J21.T7 (MSMg01no054_j21.b1)MSMg01-054J21.TJ (MSMg01no054_j21.g1)
ACCAG282503AG282504
length676699
length of high quality
(start - end)
573 (20 - 592)627 (73 - 699)
definitionCHROMAT_FILE: MSMg01no054_j21.b1 PHD_FILE: MSMg01no054_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:50 2005CHROMAT_FILE: MSMg01no054_j21.g1 PHD_FILE: MSMg01no054_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTCTCGGGAGAGGATCCGCGGAATTCTTGGTATGCAGCCTACTT
GGTGGTGAATGATGGTTTTGATGTGTTCTTAGATTTGATTTGCAAGACTT
TGATTGATTATTTTTGCATTGATATTCATAAGCAAGATTGATATGAAGTT
CTCTTATTTGTTTAGGTCCTTGTTGGTTTAGGTATCAGAGTAATTGTAGC
TTCATAGTATGAGTTATGTAGTGTGCCTTCTGTTTCTATTTTATGGACTA
GTTTGAAGAAAATTGGTATCAGGTCTTCTTTTAAGGTCTGGTAGAATTCT
GTACTAAATCCATCTGGCCCTGGGATTTTTTTGGTTGGGTGGTTTTTAAT
GAATTACTCCATTTCCTTGTGTGATATGGGCCTGTTTAGATAGCTTACAT
GCTCTTGATTTAACTGTGGTATGTGGCATCTGTCTAGAAAACCATCCATT
TCATCTAGATTTTCCATTTTTGTTGAGAATAGACTTTTATATTAGGATCT
GATGATTTTTAAAAATTTCCTCCATATCTGTTGTCATGTCTCCCTTTTGG
TTTCTGGTTTTATTAATTTGGATACTGCCTCTTGGCCCTTCAGNTAGTTT
GGCTAGGGGNTTATCTATCTTGTTGAATCTCTCACAGAACTAGGTCTTTG
GTTTTGGTGACTCTTTGAATTGACTT
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCTCTGCACACATATATAGACACACA
GACACACAAAATCTTCAATCAGGAGATGGAAACCTACTCCCTAGAAAATA
CAAATATAAGAGGGATCAAAGGAGGAGAAACGTGAGCTATTGAAATGAGG
AAAGGAAGGTGAGAAAAAGTGCAACTGCATTATCATTAATTGTGAAGAAC
AAAAATCACTGTCGTTCACTCTCCATTCAAGTTCTCCTGACTTATAAATA
CAAAACACTTGAGGTATCTCAGAACAAAGGACTAATTCTTCCTAAGGTTC
TTCATAATGTAAAATATAGACATAACTTTAACTACACATTGTTAGCAAAT
TGAAGAGATCCTTTACTCATGCTATAAACTACATATTACTCTTATTTGGG
ACTCTATACATATTGTTCCTAACAATATTTCATATCCCTGTATTACACAG
CAGCCTGGATAAATAAGTAATGGAGTATATTTCTAGTGTCAGTTGGCTAA
ATCAAATTTCTTTTTCTACAAACACTTATTGTACTGTTCCTAATTTTATT
TATGAAGAGCTAAACATGAAATTTTCTTCAATGATTTAATAGACTATGTT
TAAATGCTTATGTAGACTTTTTAAATTATAATTATATTTTTGGAATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_j21.g1 MSMg01no054_j21.g1 CHROMAT_FILE:
MSMg01no054_j21.g1 PHD_FILE: MSMg01no054_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:50 2005
         (627 letters)



>mm_chr14_107619209_107620230
          Length = 1022

 Score = 1127 bits (583), Expect = 0.0
 Identities = 614/627 (97%), Gaps = 5/627 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctctgcacacatatatagacacacagacacacaaaatcttcaatcaggagatggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 790 tctctctgcacacatatatagacacacagacacacaaaatcttcaattaggagatggaaa 731

                                                                       
Query: 61  cctactccctagaaaatacaaatataagagggatcaaaggaggagaaacgtgagctattg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 cttactccctagaaaatacaaatataagagggatcaaaggaggagaaacgtgagctattg 671

                                                                       
Query: 121 aaatgaggaaaggaaggtgagaaaaagtgcaactgcattatcattaattgtgaagaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 670 aaatgaggaaaggaaggtgagaaaaagtgcaactgcattatcattaattgtaaagaacaa 611

                                                                       
Query: 181 aaatcactgtcgttcactctccattcaagttctcctgacttataaatacaaaacacttga 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaatcactgtcattcactctccattcaagttctcctgacttataaatacaaaacacttga 551

                                                                       
Query: 241 ggtatctcagaacaaaggactaattcttcctaaggttcttcataatgtaaaatatagaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ggtatctcagaacaaaggactaattcttcctaaggttcttcataatgtaaaatatagaca 491

                                                                       
Query: 301 taactttaactacacattgttagcaaattgaagagatcctttactcatgctataaactac 360
           |||||||||||||||||||||||||||||||||| ||     ||||||||||||||||||
Sbjct: 490 taactttaactacacattgttagcaaattgaagatat-----actcatgctataaactac 436

                                                                       
Query: 361 atattactcttatttgggactctatacatattgttcctaacaatatttcatatccctgta 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 435 atattactcttatttgggactctatatatattgttcctaacaatatttcatatccctgta 376

                                                                       
Query: 421 ttacacagcagcctggataaataagtaatggagtatatttctagtgtcagttggctaaat 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttacacagcagcctgcataaataagtaatggagtatatttctagtgtcagttggctaaat 316

                                                                       
Query: 481 caaatttctttttctacaaacacttattgtactgttcctaattttatttatgaagagcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 caaatttctttttctacaaacacttattgtactgttcctaattttatttatgaagagcta 256

                                                                       
Query: 541 aacatgaaattttcttcaatgatttaatagactatgtttaaatgcttatgtagacttttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 255 aacatgaaattttcttcaatgatttaatagactatgtttaaatgcttatgtagactttta 196

                                      
Query: 601 aaattataattatatttttggaattct 627
           |||||||||||||||||||||||||||
Sbjct: 195 aaattataattatatttttggaattct 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1022
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1012
Effective search space:   624404
Effective search space used:   624404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)