BAC Information

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BAC

Clone NameMSMg01-054L14
Chromosome14 (Build37)
Map Location 56,055,363 - 56,055,712
singlet/doubletsinglet
Overlap geneEG667952
Upstream geneMmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729
Downstream geneDhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054L14.T7 (MSMg01no054_l14.b1)MSMg01-054L14.TJ (MSMg01no054_l14.g1)
ACCAG282582AG282583
length761728
length of high quality
(start - end)		483 (100 - 582)174 (124 - 297)
definitionCHROMAT_FILE: MSMg01no054_l14.b1 PHD_FILE: MSMg01no054_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:58 2005CHROMAT_FILE: MSMg01no054_l14.g1 PHD_FILE: MSMg01no054_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTTGGCCCCCCCCCCCTCCTCCCTTCTTTAAAAACNCCCACCCACN
CCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTATTCCTAATAAAACTGTCCCCTTTAAATAAATTTGGGT
TTCACTTGACTTTCAAACCTTGCTTGCCTTTATTCTTTGATTGTTGGAGA
AAGTGAGCCCGTCCTTACACCACTAGGTTTTATGAACAAGAATTCTTGGG
ATGCTGTGCCTGTGCCTGCAGCGGCTGATTGGCTGGCTCGGTGGTATGGG
AATGTCAGTGGTTTAGGAAGTTGAAATGCTTCAGATCTACAGTTCAATTA
CAGTTTATCTTGAGACATGTTTAGCCTCCTAACAAGACATCTCTTACCCA
CCTATGTGTCAGACCTAACATCTTGATTAACAACCTTAAGAAAAGAAAAG
AGGGCTGGTGAGATGCCCCACTAGGTAAGAGCACCCGACTGCTCTTCCGA
AGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTC
GTAAGGAGATCTTACTTCCCTCTTCTGGAGTGTCTGAGGGCAGCTACAGT
GTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAATTTAAAAAAA
TAAATAGAAAAGAACAGATATATTTTTCCACCAATAAAAAGTCTAAAAAT
GCTATCAGAGAACACGTGAGTCCCATAACTGAGATGCTCCACCTGGCTTG
TGACGCCTCTC

CACTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTGGCTACACAGTGA
GTCTGAGATCGGTCTGACTTCCCTTATTTATTTATTTATTTATTTATTTA
TTTATTTATTTATTTATTTATTTATTTATTTATTTGAGACAGGGTTTCTC
TGTATAGCCCTGGCTGTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCC
TTGAACTCAGAAATCTGCCTGCCTCTGCATCCCCATCCCGAGTGCTGGGA
TTAAAGGCGGGGATTTTTTTTTTAGAAAAAAGTACGGCGCCCCCCTTCTC
CTCTTTTTTTTTGTCCCCCCCCCCCCCTGCCGATCAGAGCTTAGTGCCCA
TGGCTGCCCTTTGTCCCCCAAAACCAAACAGACTCAGGGTGTCTGGACGA
TGATAAAGACATCAATGTTCCGATGCGGCAGTTCACGGATCAACCGACTC
ACGGCGTCTCCTGATGGCCAATACACCCTATTATGTCTCGATCGGCCCCT
ATGTACGGTCCACCGGGCCGCGCGGTCCCTTCTAGGTTACCGTATGTTTG
GAACCTTTTGCTTGCTTCCCTTAAGCTTCGCCTGGTCTCTCAGGTAGTCT
TACCCCTACCTTTATTGCAATCTTCCGACGCCGGGCCTGTAGGGTCGTCT
ATCTTTGACTTTCACCTAACGCCGGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_l14.b1 MSMg01no054_l14.b1 CHROMAT_FILE:
MSMg01no054_l14.b1 PHD_FILE: MSMg01no054_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:58 2005
         (483 letters)



>mm_chr14_56055160_56056043
          Length = 884

 Score =  646 bits (334), Expect = 0.0
 Identities = 346/350 (98%), Gaps = 1/350 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttattc-ctaataaaactgtcccctttaaataaatttgggtttcacttgact 62
           |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttaaacactaataaaactgtcccctttaaataaatttgggtttcacttgact 263

                                                                       
Query: 63  ttcaaaccttgcttgcctttattctttgattgttggagaaagtgagcccgtccttacacc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcaaaccttgcttgcctttattctttgattgttggagaaagtgagcccgtccttacacc 323

                                                                       
Query: 123 actaggttttatgaacaagaattcttgggatgctgtgcctgtgcctgcagcggctgattg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actaggttttatgaacaagaattcttgggatgctgtgcctgtgcctgcagcggctgattg 383

                                                                       
Query: 183 gctggctcggtggtatgggaatgtcagtggtttaggaagttgaaatgcttcagatctaca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctggctcggtggtatgggaatgtcagtggtttaggaagttgaaatgcttcagatctaca 443

                                                                       
Query: 243 gttcaattacagtttatcttgagacatgtttagcctcctaacaagacatctcttacccac 302
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttcaattacagtttatcttgagccatgtttagcctcctaacaagacatctcttacccac 503

                                                             
Query: 303 ctatgtgtcagacctaacatcttgattaacaaccttaagaaaagaaaaga 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctatgtgtcagacctaacatcttgattaacaaccttaagaaaagaaaaga 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space:   413402
Effective search space used:   413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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