BAC Information

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BAC

Clone NameMSMg01-055G04
Chromosome14 (Build37)
Map Location 86,904,801 - 86,905,098
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310
Downstream geneLOC100043311, Diap3, EG665324, Tdrd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055G04.T7 (MSMg01no055_g04.b1)MSMg01-055G04.TJ (MSMg01no055_g04.g1)
ACCAG283071AG283072
length723746
length of high quality
(start - end)
289 (73 - 361)299 (58 - 356)
definitionCHROMAT_FILE: MSMg01no055_g04.b1 PHD_FILE: MSMg01no055_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:46 2005CHROMAT_FILE: MSMg01no055_g04.g1 PHD_FILE: MSMg01no055_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATGTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAAGATCATCGATCTTGCTCAAGGACATTTCTAGGACTGT
TGGAACAGTGGTGGAAGGCTTAAGCCCTGTCAGAATTCAATTTTAAAAAG
CACTTATAATAAGAAAATACTGAAAGAGAGCACATGGATCCATACACTAG
ACTAACGCGGAAATGGAACGCGGGAATGAAAAATTACTGTATGGGTAGGG
AACGCTAGACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTACCTCATGA
GTGACTTTTAAGCCTCTCAGCTTGTCCAGTTGACTCGACTGGAGCATAGG
ACCTTTATATTTATAATAAGCCTTGACAGCACTAGAGCTGGGCAGATATC
AACCCTATATGTTATTTTCGTTTTACTGCCCATAACCCATATATAATCAC
TTGCCATGTTCCACCTGGGCCACTTCTACTTCATCTGTCTGGGCCCTCAT
GGTCATGGCGTTTAGGACTCACCTTCCCCTCGACCTCCTTTCTTCCTCCT
CCTTTTCCCCTCTTACATAACCCCCTGGCCTCGAAAACCCAGCCCTTGGG
GAACAAAAGACCCTGGCCAACCCTCTCCTATAGGCCCCAACAAAGGGACT
CGGAACGGCCTTTTTATATAACCACAACCTCTGGAAATAATTTTTGTTGG
TTTGTTGCCTAATAAAATTTATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCATTATGAAATCTTTCATTGTTATTTATGTAAACCCAGCCAAC
AAGCTATTGATGTTATTAGTCTCCTCTACCACTGGAGGGCAAAGAATGCC
CCTTTTAAGTTGACAACAAGGTACCTAAATTTGGCGAAAGCAATGAAAGA
CTGAAAAAAGCAAGCATTTTATCAAAACTATGAGCTATAGTTACAGAATA
CTTACTGTTTACAAAAATCTGCCACAGAGGAAAGATACAGCCACAACTTT
TAGCCCCAAAATCCTAACCTCCTGCCTGTAGTGAAGAAATGAATTACTTC
CATAACTATGGCCAGAAAACCAGATTTTTCATAACCTGTTCTATACTCGC
ACACTGCTTATTGTCTCCCCAAAAATCTTTCACTGTTGCATGTATATCAC
TGCAGTATTAACCTCAAGGCCCTTTACTACTGCCCATGATGTCAAAATAT
TATCTCCTCTCTGTAATATCGCCCTTCACTCTTACCTTTTTTTTTTTCCC
ACCCCCTTACGCTTCTTTGTTTCCCCTTTATACCATTTACCTTTTACCTC
CTTCCCGATTTAATATATCCCACACAAACCATACCACTTGGTCTTATACT
TTACTCCCACATTTTCCAACCACAGTGTCGATTTCTGAACTATCATTGCT
CGCACTTCCCTTAATACTCCCCCATGTACCCTTCTTACCGCTGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_g04.g1 MSMg01no055_g04.g1 CHROMAT_FILE:
MSMg01no055_g04.g1 PHD_FILE: MSMg01no055_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:46 2005
         (299 letters)



>mm_chr14_86904601_86905299
          Length = 699

 Score =  569 bits (294), Expect = e-166
 Identities = 297/298 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattatgaaatctttcattgttatttatgtaaacccagccaacaagctattgatgttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattatgaaatctttcattgttatttatgtaaacccagccaacaagctattgatgttatt 260

                                                                       
Query: 61  agtctcctctaccactggagggcaaagaatgccccttttaagttgacaacaaggtaccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtctcctctaccactggagggcaaagaatgccccttttaagttgacaacaaggtaccta 320

                                                                       
Query: 121 aatttggcgaaagcaatgaaagactgaaaaaagcaagcattttatcaaaactatgagcta 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttggggaaagcaatgaaagactgaaaaaagcaagcattttatcaaaactatgagcta 380

                                                                       
Query: 181 tagttacagaatacttactgtttacaaaaatctgccacagaggaaagatacagccacaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagttacagaatacttactgtttacaaaaatctgccacagaggaaagatacagccacaac 440

                                                                     
Query: 241 ttttagccccaaaatcctaacctcctgcctgtagtgaagaaatgaattacttccataa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttagccccaaaatcctaacctcctgcctgtagtgaagaaatgaattacttccataa 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)